Contacts of the helix formed by residues 1218 - 1273 (chain E) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1218 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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768E PRO* 4.2 18.4 - - + +
789E PHE* 3.3 47.8 - + + -
790E GLU* 4.9 12.3 - - + -
845E GLN* 3.2 23.4 + - - -
1213E ILE* 3.8 9.4 + - + +
1216E PHE* 3.0 24.9 - - + -
1217E ARG* 1.3 81.2 - - - +
1219E GLU* 1.3 54.5 + - - +
1220E ALA* 3.2 3.4 - - - -
1221E ARG* 2.7 41.7 + - + +
1222E PHE* 3.5 7.6 + - + +
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Residues in contact with GLU1219 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400E MET* 3.1 48.3 - - + +
401E HIS* 4.9 9.4 + - - -
1213E ILE* 4.4 9.0 - - + +
1214E ARG* 5.9 3.0 - - - +
1217E ARG* 3.3 31.1 + - - +
1218E TYR* 1.3 76.2 - - - +
1220E ALA* 1.3 67.5 + - + +
1221E ARG 3.1 0.5 + - - -
1222E PHE* 3.2 4.2 + - - +
1223E GLN* 2.9 37.1 + - - +
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Residues in contact with ALA1220 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1217E ARG 5.1 0.2 + - - -
1218E TYR 3.1 1.5 + - - -
1219E GLU* 1.3 83.6 - - + +
1221E ARG* 1.3 56.8 + - - +
1223E GLN* 3.3 16.6 + - - +
1224E GLN* 2.9 41.2 + - + +
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Residues in contact with ARG1221 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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790E GLU* 4.7 21.5 - - + +
1218E TYR* 2.7 31.3 + - + +
1220E ALA* 1.3 73.8 - - - +
1222E PHE* 1.3 70.5 + - + +
1224E GLN* 3.1 32.8 + - - +
1225E LYS* 2.9 61.9 + - + +
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Residues in contact with PHE1222 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396E TYR* 3.1 24.5 + - - +
400E MET* 4.9 3.1 - - + -
777E TRP* 5.8 1.6 - + - -
779E LEU* 4.3 22.2 - - + -
789E PHE* 3.7 30.3 - + - -
790E GLU* 6.0 3.4 - - + -
1202E HIS* 3.6 15.5 + + + -
1213E ILE* 3.4 51.1 - - + -
1218E TYR* 3.5 6.3 + - + +
1219E GLU 3.2 6.2 + - - +
1221E ARG* 1.3 83.4 - - + +
1223E GLN* 1.3 60.3 + - - +
1225E LYS* 3.3 31.4 + - + +
1226E LEU* 2.9 26.3 + - - +
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Residues in contact with GLN1223 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396E TYR* 3.6 24.2 + - + -
397E ASN* 4.7 12.8 + - - +
400E MET* 4.0 25.6 - - + +
401E HIS* 5.8 1.2 + - - -
1219E GLU* 2.9 35.3 + - - +
1220E ALA* 3.4 19.2 - - - +
1222E PHE* 1.3 76.9 - - - +
1224E GLN* 1.3 63.7 + - + +
1226E LEU* 3.3 1.6 + - - +
1227E LEU* 2.9 41.2 + - + +
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Residues in contact with GLN1224 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1220E ALA* 2.9 25.4 + - + +
1221E ARG* 3.1 26.9 + - - +
1223E GLN* 1.3 81.4 + - - +
1225E LYS* 1.3 63.2 - - - +
1227E LEU* 3.2 23.6 + - - +
1228E GLU* 2.9 23.0 + - - +
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Residues in contact with LYS1225 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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779E LEU* 6.5 0.7 - - - -
1202E HIS* 4.6 7.6 - - + -
1221E ARG* 2.9 42.4 + - + +
1222E PHE* 3.4 42.0 - - + +
1223E GLN 3.3 0.2 - - - -
1224E GLN* 1.3 76.1 - - - +
1226E LEU* 1.3 59.1 + - - +
1228E GLU* 3.2 9.0 + - - +
1229E TYR* 2.9 58.9 + - + -
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Residues in contact with LEU1226 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392E GLN 4.4 7.4 - - - +
393E THR* 5.3 2.5 - - - -
396E TYR* 3.3 40.2 - - + -
1199E LEU* 4.0 9.6 - - + -
1202E HIS* 3.9 19.5 + - + +
1203E PHE* 3.4 35.9 - - + -
1222E PHE 2.9 17.0 + - - +
1223E GLN 3.9 3.6 - - - +
1225E LYS* 1.3 73.2 - - - +
1227E LEU* 1.3 69.4 + - + +
1229E TYR* 3.1 19.5 + - + -
1230E THR* 2.8 29.6 + - - +
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Residues in contact with LEU1227 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258E ARG* 5.2 9.4 - - + +
259E ALA* 5.1 15.7 - - + -
393E THR* 4.4 29.4 - - + +
396E TYR* 5.8 2.7 - - + -
1223E GLN* 2.9 33.8 + - + +
1224E GLN* 3.5 30.5 - - - +
1226E LEU* 1.3 81.1 - - + +
1228E GLU* 1.3 57.2 + - - +
1230E THR* 3.3 5.1 + - - -
1231E ASP* 2.8 42.3 + - - +
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Residues in contact with GLU1228 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1224E GLN 2.9 12.6 + - - +
1225E LYS* 3.4 9.9 - - - +
1226E LEU 3.1 0.2 - - - -
1227E LEU* 1.3 76.6 - - - +
1229E TYR* 1.3 93.3 + - - +
1231E ASP* 3.3 10.5 + - + +
1232E SER* 2.7 48.1 + - - -
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Residues in contact with TYR1229 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1195E THR 4.8 2.8 - - - +
1198E PRO* 4.2 24.7 - - + -
1199E LEU* 3.6 19.4 - - + +
1202E HIS* 3.6 40.3 + + + -
1225E LYS* 2.9 44.2 + - + -
1226E LEU* 3.5 14.6 - - + +
1228E GLU* 1.3 95.1 + - - +
1230E THR* 1.3 62.1 + - - +
1232E SER* 3.1 8.9 + - - -
1233E ASN* 3.0 22.7 + - - +
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Residues in contact with THR1230 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258E ARG* 5.1 3.1 - - + -
388E ARG* 6.1 0.2 - - - +
389E GLY* 3.6 22.2 - - - +
392E GLN* 3.3 29.8 + - - +
393E THR* 5.3 4.6 + - - +
1199E LEU* 3.9 7.1 - - - +
1226E LEU* 2.8 35.1 + - - +
1227E LEU* 3.7 6.2 - - - -
1229E TYR* 1.3 69.3 - - - +
1231E ASP* 1.3 63.6 + - - +
1233E ASN* 3.2 4.8 + - + +
1234E ASN* 2.9 50.1 + - - +
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Residues in contact with ASP1231 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253E LEU* 3.3 38.2 - - + +
257E MET* 3.7 2.3 - - - +
258E ARG* 3.2 30.5 - - - +
1227E LEU* 2.8 35.5 + - - +
1228E GLU* 3.5 9.4 - - + +
1230E THR* 1.3 75.3 - - - +
1232E SER* 1.3 58.1 + - - +
1234E ASN* 3.2 7.3 + - - +
1235E ILE* 2.9 35.3 + - - +
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Residues in contact with SER1232 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253E LEU* 5.8 0.4 - - - -
1195E THR* 3.4 21.6 - - - +
1228E GLU* 2.7 38.8 + - - -
1229E TYR* 3.1 11.4 + - - -
1231E ASP* 1.3 77.2 - - - +
1233E ASN* 1.3 63.7 + - - +
1235E ILE* 3.2 6.3 + - - +
1236E ALA* 3.0 19.4 + - - +
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Residues in contact with ASN1233 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388E ARG* 3.5 31.3 + - - +
392E GLN* 4.7 3.2 + - - +
1192E ASP* 3.5 20.6 - - - +
1195E THR* 3.4 13.7 - - - +
1196E GLN* 4.4 18.8 - - - +
1199E LEU* 3.2 34.4 - - + +
1229E TYR 3.0 9.3 + - - +
1230E THR* 3.7 7.6 - - + +
1232E SER* 1.3 75.4 - - - +
1234E ASN* 1.3 58.8 + - - +
1236E ALA* 3.3 1.7 + - - +
1237E SER* 2.9 23.0 + - - -
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Residues in contact with ASN1234 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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257E MET* 6.2 1.6 - - - +
258E ARG* 4.3 7.3 - - - +
385E ILE* 3.3 24.7 + - + +
388E ARG* 3.0 28.4 + - - +
389E GLY* 4.2 8.7 + - - -
1230E THR* 2.9 43.6 + - - +
1231E ASP* 3.5 13.1 + - - +
1232E SER 3.2 0.2 - - - -
1233E ASN* 1.3 78.0 - - - +
1235E ILE* 1.3 61.5 + - + +
1237E SER* 3.2 3.1 + - - -
1238E LEU* 2.9 35.5 + - + +
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Residues in contact with ILE1235 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 5.1 6.3 - - + +
250E ILE* 5.5 0.4 - - + -
251E GLY 3.2 24.9 - - - +
252E LYS 3.6 18.8 - - - +
253E LEU* 3.7 32.8 - - + -
254E PRO* 4.2 9.2 - - + -
1231E ASP 2.9 16.8 + - - +
1232E SER* 3.9 4.9 - - - +
1234E ASN* 1.3 77.7 - - + +
1236E ALA* 1.3 64.4 - - - +
1238E LEU* 3.2 17.0 + - + +
1239E PHE* 2.9 42.0 + - + -
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Residues in contact with ALA1236 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1188E LEU* 4.1 4.9 - - + +
1191E LEU* 3.7 23.8 - - + -
1192E ASP* 4.3 15.5 - - - +
1195E THR* 4.3 12.8 - - - -
1232E SER 3.0 14.5 + - - +
1233E ASN* 3.6 8.7 - - - +
1235E ILE* 1.3 76.5 - - - +
1237E SER* 1.3 63.1 + - - +
1239E PHE* 3.1 18.8 + - - +
1240E LEU* 3.0 19.4 + - - +
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Residues in contact with SER1237 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381E ILE* 5.6 1.0 - - - +
385E ILE* 3.1 20.0 - - - +
388E ARG* 3.4 32.3 + - - -
429E MET* 5.2 2.1 - - - -
433E PHE* 6.1 0.3 - - - -
1192E ASP* 4.8 8.9 + - - -
1233E ASN* 2.9 10.2 + - - -
1234E ASN 3.6 2.7 - - - -
1236E ALA* 1.3 76.0 - - - +
1238E LEU* 1.3 58.0 + - - +
1240E LEU* 3.1 14.0 + - - +
1241E THR* 2.9 35.0 + - - -
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Residues in contact with LEU1238 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 4.0 16.2 - - + +
218E LEU* 4.8 19.3 - - + -
254E PRO* 5.4 3.1 - - + -
378E TYR* 4.4 20.7 + - + +
381E ILE 5.9 0.4 - - - -
382E GLU* 5.1 12.8 - - + -
385E ILE* 3.9 32.1 - - + -
1234E ASN* 2.9 22.1 + - + +
1235E ILE* 3.6 23.6 - - + +
1236E ALA 3.2 0.2 - - - -
1237E SER* 1.3 74.4 - - - +
1239E PHE* 1.3 65.3 + - - +
1241E THR* 3.8 8.5 - - - +
1242E ALA* 2.9 26.2 + - - +
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Residues in contact with PHE1239 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 3.3 54.3 - + - -
249E ALA 5.3 0.9 - - - -
250E ILE* 3.4 23.1 - - + -
251E GLY 3.3 25.1 - - - -
1188E LEU* 3.5 24.2 - - + +
1191E LEU* 4.5 12.6 - - + -
1235E ILE* 2.9 31.7 + - + -
1236E ALA* 3.2 15.0 - - - +
1238E LEU* 1.3 76.9 - - - +
1240E LEU* 1.3 62.2 + - - +
1242E ALA* 3.3 1.7 + - - +
1243E ALA* 3.0 24.4 + - - +
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Residues in contact with LEU1240 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181E PHE* 5.9 1.6 - - + -
1185E SER* 4.6 14.1 - - - +
1188E LEU* 3.4 28.4 - - + +
1189E GLN* 4.1 20.6 - - - +
1192E ASP* 4.1 13.7 - - - +
1236E ALA 3.0 10.1 + - - +
1237E SER* 3.1 16.1 + - - +
1239E PHE* 1.3 75.9 - - - +
1241E THR* 1.3 60.9 + - - +
1243E ALA* 3.3 3.8 + - + +
1244E ASN* 2.9 36.0 + - + +
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Residues in contact with THR1241 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378E TYR* 3.5 22.0 - - + -
381E ILE* 3.2 54.6 - - + +
385E ILE* 5.4 0.3 - - - +
1237E SER* 2.9 20.9 + - - -
1238E LEU* 3.8 9.5 - - - +
1239E PHE 3.2 0.2 - - - -
1240E LEU* 1.3 75.7 - - - +
1242E ALA* 1.3 67.6 + - - +
1244E ASN* 3.2 5.5 + - - +
1245E ARG* 2.8 38.9 + - + +
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Residues in contact with ALA1242 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 4.1 11.0 - - + -
230E TYR* 4.3 11.6 - - - -
232E TRP* 3.7 30.3 - - + -
233E MET* 4.1 12.5 - - + +
378E TYR* 5.0 3.7 - - + -
1238E LEU 2.9 18.3 + - - +
1239E PHE 3.7 3.6 - - - +
1241E THR* 1.3 77.0 - - - +
1243E ALA* 1.3 63.7 + - - +
1245E ARG* 3.4 1.6 + - - +
1246E TRP* 2.9 24.4 + - - +
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Residues in contact with ALA1243 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233E MET* 5.4 2.2 - - - -
237E ILE* 5.9 8.1 - - + -
1181E PHE* 2.9 33.2 - - + -
1184E ALA* 5.8 5.2 - - + -
1185E SER* 5.9 2.5 - - - -
1188E LEU* 5.4 7.9 - - + -
1239E PHE 3.0 17.6 + - - +
1240E LEU* 3.7 6.1 - - + +
1242E ALA* 1.3 76.3 - - - +
1244E ASN* 1.3 62.2 + - - +
1246E TRP* 3.2 8.8 + - - +
1247E LEU 3.0 14.9 + - - -
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Residues in contact with ASN1244 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377E TYR* 5.0 4.2 + - - -
1181E PHE* 3.7 18.1 - - + -
1240E LEU* 2.9 26.7 + - + +
1241E THR* 3.6 3.4 - - - +
1243E ALA* 1.3 76.0 - - - +
1245E ARG* 1.3 88.8 + - - +
1247E LEU* 3.4 4.2 + - - +
1248E GLU* 2.8 27.5 + - - +
1299E ARG* 4.7 20.0 - - - +
1303E ASP* 5.7 2.4 + - - -
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Residues in contact with ARG1245 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230E TYR* 3.6 37.0 - - + +
374E GLN* 3.3 19.6 + - - +
377E TYR* 3.2 45.0 + - - -
378E TYR* 4.3 7.4 - - + +
381E ILE* 5.1 1.2 - - - +
1241E THR* 2.8 36.9 + - + +
1242E ALA 3.9 1.3 - - - +
1244E ASN* 1.3 122.8 + - - +
1246E TRP* 1.3 61.2 + - - +
1248E GLU* 3.2 26.4 + - - +
1249E VAL* 2.9 34.1 + - - +
1299E ARG* 4.8 6.9 - - - +
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Residues in contact with TRP1246 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230E TYR* 3.1 35.5 - - + -
233E MET* 4.4 4.9 - - + +
234E ASN* 3.2 29.3 - - + +
237E ILE* 4.4 15.7 - - + -
1177E ILE* 5.8 4.7 - - + -
1180E TYR* 4.1 34.1 - + - -
1181E PHE* 4.6 13.7 - + + -
1242E ALA 2.9 18.5 + - - +
1243E ALA* 3.2 9.4 + - - +
1245E ARG* 1.3 77.0 - - - +
1247E LEU* 1.3 76.8 + - + +
1249E VAL* 3.2 4.6 + - - +
1250E ARG* 2.8 79.3 + - + +
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Residues in contact with LEU1247 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177E ILE* 3.7 31.2 - - + +
1178E GLN* 4.7 7.4 - - + +
1181E PHE* 3.4 57.0 - - + -
1182E ARG* 6.2 0.2 - - + -
1243E ALA 3.0 6.6 + - - +
1244E ASN* 3.8 7.6 - - - +
1246E TRP* 1.3 84.9 - - + +
1248E GLU* 1.3 64.0 + - - +
1250E ARG* 3.2 6.6 + - + +
1251E MET* 2.9 31.2 + - + +
1295E ASN* 6.2 0.2 - - - +
1298E VAL* 3.9 26.9 - - + -
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Residues in contact with GLU1248 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374E GLN* 3.0 33.1 - - - +
1244E ASN* 2.8 17.0 + - - +
1245E ARG* 3.2 29.2 + - - +
1247E LEU* 1.3 77.6 - - - +
1249E VAL* 1.3 62.4 + - - +
1252E GLU* 2.9 17.6 + - + +
1295E ASN* 2.6 60.2 + - - +
1296E TRP* 5.3 1.6 - - - -
1299E ARG* 3.9 20.8 + - - +
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Residues in contact with VAL1249 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228E GLY 4.4 6.5 - - - +
229E THR* 3.8 10.5 - - - +
230E TYR* 4.1 16.4 - - + -
371E THR* 6.0 1.6 - - - +
374E GLN* 3.7 26.9 - - + +
1245E ARG 2.9 20.8 + - - +
1246E TRP* 3.5 6.1 - - - +
1248E GLU* 1.3 74.6 - - - +
1250E ARG* 1.3 80.3 + - - +
1252E GLU* 3.2 7.5 + - - +
1253E TYR* 3.0 55.0 + - + +
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Residues in contact with ARG1250 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229E THR* 3.8 16.6 + - - +
231E TRP* 3.6 32.7 - - - -
234E ASN* 4.2 1.0 - - - +
1177E ILE* 4.9 9.0 - - + -
1246E TRP* 2.8 67.8 + - + +
1247E LEU* 3.2 12.5 + - + +
1249E VAL* 1.3 100.9 - - - +
1251E MET* 1.3 63.8 + - - +
1253E TYR* 3.1 15.1 + - - +
1254E ILE* 3.0 27.2 + - + +
----------------------------------------------------------
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Residues in contact with MET1251 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174E CYS* 3.4 29.6 - - + -
1177E ILE* 3.4 30.1 - - - -
1178E GLN* 4.8 3.6 - - - +
1247E LEU* 2.9 36.1 + - + +
1248E GLU 3.9 2.9 - - - +
1250E ARG* 1.3 75.7 - - - +
1252E GLU* 1.3 63.2 + - - +
1254E ILE* 3.2 17.9 + - + +
1255E GLY* 3.0 18.5 + - - -
1294E LEU* 3.6 34.0 - - + +
1295E ASN* 4.3 15.5 - - - +
1298E VAL* 3.7 21.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU1252 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366E LEU* 5.4 1.2 - - - +
367E LEU* 6.5 0.2 - - - -
370E ARG* 2.9 57.0 + - + +
374E GLN* 6.4 0.7 - - + -
1248E GLU* 2.9 21.2 + - + +
1249E VAL* 3.4 8.5 - - - +
1251E MET* 1.3 77.4 - - - +
1253E TYR* 1.3 65.8 + - + +
1255E GLY* 3.0 2.6 + - - -
1256E ALA* 2.9 28.0 + - + +
1291E SER* 3.1 31.1 + - - +
1292E ASN 5.3 0.2 - - - +
1295E ASN* 3.9 17.1 + - - +
----------------------------------------------------------
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Residues in contact with TYR1253 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229E THR* 4.3 11.8 + - - -
363E PHE* 5.6 0.2 - - - -
367E LEU* 3.9 39.5 + - + +
371E THR* 3.7 27.9 + - - -
1249E VAL* 3.0 41.8 + - + +
1250E ARG* 3.7 15.7 - - - +
1252E GLU* 1.3 84.8 - - + +
1254E ILE* 1.3 66.4 + - - +
1256E ALA* 3.3 5.4 + - + +
1257E CYS* 3.0 32.5 + - - -
----------------------------------------------------------
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Residues in contact with ILE1254 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170E LEU* 3.8 31.4 - - + +
1173E VAL* 4.8 8.3 - - + -
1174E CYS* 4.4 22.2 - - + +
1177E ILE* 4.4 8.7 - - + -
1250E ARG* 3.0 14.7 + - + +
1251E MET* 3.3 37.5 - - + +
1253E TYR* 1.3 76.1 - - - +
1255E GLY* 1.3 63.8 + - - +
1257E CYS* 3.2 9.4 + - - +
1258E VAL* 2.9 28.0 + - + +
1294E LEU* 5.6 6.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY1255 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1251E MET 3.0 13.7 + - - -
1252E GLU* 3.0 4.4 + - - -
1254E ILE* 1.3 78.0 - - - +
1256E ALA* 1.3 56.9 + - - +
1258E VAL* 3.1 11.7 + - - +
1259E VAL* 2.9 31.5 + - - +
1290E VAL* 5.5 3.8 - - - -
1291E SER* 3.8 23.5 - - - -
1294E LEU* 5.7 5.8 - - - -
----------------------------------------------------------
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Residues in contact with ALA1256 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363E PHE* 3.1 27.5 - - + -
366E LEU* 5.1 13.2 - - + -
367E LEU* 4.1 20.6 - - + +
1252E GLU* 2.9 16.2 + - + +
1253E TYR* 3.7 7.6 - - + +
1254E ILE 3.2 0.2 - - - -
1255E GLY* 1.3 73.0 - - - +
1257E CYS* 1.3 66.5 + - - +
1259E VAL* 3.2 6.7 + - - +
1260E LEU 3.0 18.7 + - - -
1291E SER* 4.0 7.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS1257 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363E PHE* 3.7 17.5 - - - -
1170E LEU* 4.8 12.3 - - + -
1253E TYR* 3.0 21.8 + - - +
1254E ILE* 3.5 10.5 - - - +
1256E ALA* 1.3 75.8 - - - +
1258E VAL* 1.3 63.5 + - - +
1260E LEU* 3.3 3.7 + - - +
1261E ILE* 2.9 36.7 + - + +
----------------------------------------------------------
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Residues in contact with VAL1258 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153E LEU* 5.9 1.6 - - + -
1156E ILE* 4.4 13.2 - - + -
1163E PHE* 3.8 24.4 - - + -
1167E LEU* 5.4 7.2 - - + -
1170E LEU* 4.7 15.5 - - + -
1254E ILE* 2.9 29.7 + - + +
1255E GLY* 3.3 12.1 - - - +
1257E CYS* 1.3 77.2 - - - +
1259E VAL* 1.3 65.2 + - - +
1261E ILE* 3.7 7.2 - - + +
1262E ALA* 3.0 22.5 + - - +
1287E ALA* 4.9 7.4 - - + +
1290E VAL* 4.8 18.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL1259 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362E LEU* 4.8 7.2 - - + -
363E PHE* 5.6 5.2 - - + +
366E LEU* 4.4 14.1 - - + -
1255E GLY 2.9 15.1 + - - +
1256E ALA* 3.5 9.4 - - - +
1258E VAL* 1.3 76.0 - - - +
1260E LEU* 1.3 63.8 + - - +
1262E ALA* 3.3 2.1 + - - +
1263E ALA* 2.9 27.2 + - + +
1284E LEU* 4.8 1.3 - - + +
1287E ALA* 3.1 39.6 - - + +
1288E LEU* 3.9 25.8 - - + +
1291E SER* 3.4 14.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU1260 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359E ALA* 4.5 5.4 - - + +
360E VAL* 4.0 26.9 - - + +
363E PHE* 3.4 56.7 - - + -
1256E ALA 3.0 8.2 + - - +
1257E CYS* 3.7 5.2 - - - +
1259E VAL* 1.3 78.3 - - - +
1261E ILE* 1.3 65.3 + - + +
1263E ALA* 3.3 3.3 + - + +
1264E VAL* 2.9 46.0 + - + +
----------------------------------------------------------
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Residues in contact with ILE1261 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163E PHE* 3.5 24.7 - - + -
1166E ALA* 3.6 26.9 - - + -
1170E LEU* 4.7 18.2 - - + -
1257E CYS* 2.9 30.8 + - + +
1258E VAL* 3.7 7.2 - - + +
1260E LEU* 1.3 76.4 - - + +
1262E ALA* 1.3 64.7 + - - +
1264E VAL* 3.9 3.4 - - - +
1265E THR* 2.8 37.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA1262 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156E ILE* 5.2 9.2 - - + -
1160E THR* 5.3 4.7 - - + -
1163E PHE* 4.2 18.8 - - + -
1258E VAL 3.0 16.5 + - - +
1259E VAL 3.7 3.4 - - - +
1261E ILE* 1.3 76.2 - - - +
1263E ALA* 1.3 63.8 + - - +
1265E THR* 3.9 2.7 - - - -
1266E SER* 2.7 33.9 + - - +
1283E GLY 4.8 7.9 - - - +
1284E LEU* 5.1 2.7 - - - -
1287E ALA* 3.9 18.6 - - + -
----------------------------------------------------------
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Residues in contact with ALA1263 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323E ILE* 5.2 6.1 - - + -
359E ALA* 4.0 24.9 - - + +
362E LEU* 6.5 0.9 - - + -
1259E VAL* 2.9 21.2 + - + +
1260E LEU* 3.7 6.3 - - + +
1262E ALA* 1.3 76.9 - - - +
1264E VAL* 1.3 63.6 + - + +
1266E SER* 3.8 2.0 - - - -
1267E ILE* 2.9 31.2 + - + +
1284E LEU* 4.6 21.4 - - + +
----------------------------------------------------------
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Residues in contact with VAL1264 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356E TYR* 4.6 22.9 - - + +
359E ALA* 5.5 5.2 - - + -
360E VAL* 6.1 0.9 - - + -
1260E LEU* 2.9 41.1 + - + +
1261E ILE* 3.9 3.8 - - - +
1263E ALA* 1.3 77.1 - - + +
1265E THR* 1.3 66.7 + - - +
1267E ILE* 3.8 4.0 - - - +
1268E SER* 3.0 27.6 + - - +
----------------------------------------------------------
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Residues in contact with THR1265 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160E THR* 3.2 27.6 - - + +
1162E VAL* 3.7 29.2 - - + +
1163E PHE* 4.8 4.4 - - - +
1261E ILE* 2.8 29.7 + - - +
1262E ALA* 3.9 4.3 - - - -
1264E VAL* 1.3 79.0 - - - +
1266E SER* 1.3 62.4 + - - +
1268E SER* 2.7 22.8 + - - +
1269E ASN* 2.9 13.2 + - + +
----------------------------------------------------------
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Residues in contact with SER1266 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159E VAL* 5.2 4.7 - - - +
1160E THR* 3.9 21.8 - - - +
1262E ALA* 2.7 25.1 + - - +
1263E ALA* 3.8 3.4 - - - -
1265E THR* 1.3 77.4 - - - +
1267E ILE* 1.3 57.3 + - - +
1269E ASN* 3.9 3.4 - - - +
1270E SER* 2.9 34.1 + - - -
1275E LEU* 4.5 2.8 - - - +
1280E VAL* 3.5 35.2 + - - +
1283E GLY* 5.4 1.4 - - - -
1284E LEU* 5.3 3.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE1267 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323E ILE* 3.5 35.2 - - + +
327E LEU* 4.0 12.7 - - + +
355E ALA* 4.4 25.8 - - + +
356E TYR* 4.1 20.2 - - + +
359E ALA* 5.5 3.1 - - + -
1263E ALA* 2.9 26.2 + - + +
1264E VAL* 3.8 3.4 - - - +
1266E SER* 1.3 76.1 - - - +
1268E SER* 1.3 67.6 + - - +
1270E SER* 4.7 0.9 - - - -
1271E LEU* 3.0 47.1 + - + +
1280E VAL* 3.7 14.1 - - + -
1284E LEU* 5.7 0.4 - - + -
----------------------------------------------------------
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Residues in contact with SER1268 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356E TYR* 3.6 23.0 + - - -
1264E VAL* 3.0 16.5 + - - -
1265E THR* 2.7 25.8 + - - +
1267E ILE* 1.3 76.8 - - - +
1269E ASN* 1.3 65.8 + - - +
1272E HIS* 2.9 38.2 + - - +
----------------------------------------------------------
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Residues in contact with ASN1269 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159E VAL 5.5 0.4 + - - -
1160E THR* 4.9 11.5 + - - +
1161E PRO* 5.2 8.5 - - - +
1162E VAL* 5.0 11.3 - - + +
1265E THR* 2.9 17.5 + - + +
1266E SER* 3.9 2.2 - - - +
1268E SER* 1.3 79.9 + - - +
1270E SER* 1.3 53.4 + - - +
1272E HIS* 4.8 0.9 - - - -
1273E ARG* 2.3 72.4 + - - +
1275E LEU* 3.4 20.8 - - + +
----------------------------------------------------------
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Residues in contact with SER1270 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327E LEU* 3.4 27.2 - - - +
1266E SER 2.9 22.1 + - - -
1269E ASN* 1.3 76.4 - - - +
1271E LEU* 1.3 64.6 + - - +
1272E HIS 3.1 0.2 + - - -
1273E ARG 3.1 7.0 - - - -
1274E GLU* 3.1 23.0 - - - +
1275E LEU* 3.4 16.1 + - - +
1277E ALA* 3.8 7.1 + - - +
1280E VAL* 3.4 22.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU1271 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327E LEU* 4.4 21.8 - - + +
353E ALA* 5.4 5.4 - - + -
355E ALA* 5.7 3.1 - - + -
356E TYR* 4.0 15.0 - - + +
1267E ILE* 3.0 45.2 + - + +
1268E SER 3.9 1.1 - - - +
1270E SER* 1.3 82.2 - - - +
1272E HIS* 1.3 94.2 + - + +
----------------------------------------------------------
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Residues in contact with HIS1272 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356E TYR* 3.7 9.7 + - - -
1268E SER* 2.9 39.9 + - - +
1269E ASN* 3.8 1.1 - - - +
1271E LEU* 1.3 103.0 + - + +
1273E ARG* 1.3 59.8 + - + +
1274E GLU* 3.9 5.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG1273 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1269E ASN* 2.3 60.5 + - - +
1270E SER* 3.1 1.4 - - - +
1272E HIS* 1.3 69.0 - - + +
1274E GLU* 1.3 76.0 + - - +
1275E LEU* 3.4 4.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il