Contacts of the helix formed by residues 1218 - 1273 (chain F) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1218 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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768F PRO* 4.2 17.6 - - + +
789F PHE* 3.3 48.2 - + + -
790F GLU* 4.9 11.9 - - + -
845F GLN* 3.2 23.5 + - - -
1213F ILE* 3.8 9.6 + - + +
1216F PHE* 3.0 23.8 - - + -
1217F ARG* 1.3 80.6 - - - +
1219F GLU* 1.3 54.0 + - - +
1220F ALA* 3.2 3.4 - - - -
1221F ARG* 2.7 41.3 + - + +
1222F PHE* 3.5 7.9 + - + +
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Residues in contact with GLU1219 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400F MET* 3.1 48.5 - - + +
401F HIS* 4.9 10.0 + - - -
1213F ILE* 4.4 8.3 + - + +
1214F ARG* 5.9 3.8 - - - +
1217F ARG* 3.3 31.5 + - - +
1218F TYR* 1.3 75.0 - - - +
1220F ALA* 1.3 69.5 + - + +
1221F ARG 3.1 0.5 + - - -
1222F PHE* 3.2 4.0 + - - +
1223F GLN* 2.9 36.9 + - - +
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Residues in contact with ALA1220 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1217F ARG 5.1 0.2 + - - -
1218F TYR 3.2 1.3 - - - -
1219F GLU* 1.3 83.8 - - + +
1221F ARG* 1.3 59.0 + - - +
1223F GLN* 3.3 17.5 + - - +
1224F GLN* 2.9 40.2 + - + +
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Residues in contact with ARG1221 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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790F GLU* 4.7 22.4 - - + +
1218F TYR* 2.7 30.4 + - + +
1220F ALA* 1.3 73.0 - - - +
1222F PHE* 1.3 70.7 + - + +
1224F GLN* 3.1 32.5 + - - +
1225F LYS* 2.9 62.6 + - + +
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Residues in contact with PHE1222 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396F TYR* 3.1 23.2 + - - +
400F MET* 4.9 2.9 - - + -
777F TRP* 5.8 1.8 - + - -
779F LEU* 4.3 22.4 - - + -
789F PHE* 3.7 30.3 - + - -
790F GLU* 6.0 3.6 - - + -
1202F HIS* 3.6 14.4 + + + -
1213F ILE* 3.4 50.9 - - + -
1218F TYR* 3.5 5.0 + - + +
1219F GLU 3.2 6.0 + - - +
1221F ARG* 1.3 83.7 - - + +
1223F GLN* 1.3 60.3 + - - +
1225F LYS* 3.3 32.2 + - + +
1226F LEU* 2.9 26.2 + - - +
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Residues in contact with GLN1223 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396F TYR* 3.6 25.4 - - + -
397F ASN* 4.7 12.6 + - - +
400F MET* 4.0 25.5 - - + +
401F HIS* 5.8 1.0 + - - -
1219F GLU* 2.9 36.1 + - - +
1220F ALA* 3.4 18.5 - - - +
1222F PHE* 1.3 76.1 - - - +
1224F GLN* 1.3 63.4 + - + +
1226F LEU* 3.3 1.9 + - - +
1227F LEU* 2.9 40.6 + - + +
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Residues in contact with GLN1224 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1220F ALA* 2.9 26.3 + - + +
1221F ARG* 3.2 26.7 - - - +
1223F GLN* 1.3 82.2 + - - +
1225F LYS* 1.3 64.1 + - - +
1227F LEU* 3.2 23.5 + - - +
1228F GLU* 2.9 23.0 + - - +
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Residues in contact with LYS1225 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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779F LEU* 6.5 0.7 - - - -
1202F HIS* 4.6 7.9 - - + -
1221F ARG* 2.9 40.2 + - + +
1222F PHE* 3.4 42.8 - - + +
1224F GLN* 1.3 76.5 - - - +
1226F LEU* 1.3 57.2 + - - +
1228F GLU* 3.2 8.8 + - - +
1229F TYR* 2.9 59.3 + - + -
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Residues in contact with LEU1226 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392F GLN 4.4 6.7 - - - +
393F THR* 5.3 2.9 - - - -
396F TYR* 3.3 39.5 - - + -
1199F LEU* 4.0 10.1 - - + -
1202F HIS* 3.9 19.2 + - + +
1203F PHE* 3.4 37.0 - - + -
1222F PHE 2.9 17.7 + - - +
1223F GLN 3.9 3.1 - - - +
1225F LYS* 1.3 72.7 - - - +
1227F LEU* 1.3 70.3 + - + +
1229F TYR* 3.1 18.9 + - + -
1230F THR* 2.8 29.9 + - - +
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Residues in contact with LEU1227 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258F ARG* 5.2 9.6 - - + +
259F ALA* 5.1 15.7 - - + -
393F THR* 4.4 29.6 - - + +
396F TYR* 5.8 3.4 - - + -
1223F GLN* 2.9 33.4 + - + +
1224F GLN* 3.5 31.0 - - - +
1226F LEU* 1.3 79.3 - - + +
1228F GLU* 1.3 55.7 + - - +
1230F THR* 3.3 5.8 + - - -
1231F ASP* 2.8 40.8 + - - +
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Residues in contact with GLU1228 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1224F GLN 2.9 13.5 + - - +
1225F LYS* 3.4 9.6 - - - +
1226F LEU 3.1 0.2 - - - -
1227F LEU* 1.3 76.0 - - - +
1229F TYR* 1.3 93.6 + - - +
1231F ASP* 3.3 10.5 + - + +
1232F SER* 2.7 46.8 + - - -
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Residues in contact with TYR1229 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1195F THR 4.8 2.3 - - - +
1198F PRO* 4.2 24.9 - - + -
1199F LEU* 3.6 19.6 - - + +
1202F HIS* 3.6 39.9 + + + -
1225F LYS* 2.9 44.4 + - + -
1226F LEU* 3.5 14.4 - - + +
1228F GLU* 1.3 94.3 + - - +
1230F THR* 1.3 64.5 + - - +
1232F SER* 3.1 8.1 + - - -
1233F ASN* 3.0 22.7 + - - +
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Residues in contact with THR1230 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258F ARG* 5.1 3.6 - - + -
388F ARG* 6.1 0.4 - - - +
389F GLY* 3.6 22.0 - - - +
392F GLN* 3.3 30.4 + - - +
393F THR* 5.3 4.2 + - - +
1199F LEU* 4.1 6.8 - - - +
1226F LEU* 2.8 36.1 + - - +
1227F LEU* 3.7 6.1 - - - -
1229F TYR* 1.3 69.5 - - - +
1231F ASP* 1.3 64.1 + - - +
1233F ASN* 3.2 5.6 + - + +
1234F ASN* 2.9 49.7 + - - +
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Residues in contact with ASP1231 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253F LEU* 3.3 39.2 - - + +
257F MET* 3.7 1.5 - - - +
258F ARG* 3.2 30.3 - - - +
1227F LEU* 2.8 34.6 + - - +
1228F GLU* 3.5 9.8 - - + +
1230F THR* 1.3 75.5 - - - +
1232F SER* 1.3 57.5 + - - +
1234F ASN* 3.2 7.5 + - - +
1235F ILE* 2.9 36.1 + - - +
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Residues in contact with SER1232 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253F LEU* 5.8 0.2 - - - -
1195F THR* 3.4 21.9 - - - +
1228F GLU* 2.7 39.5 + - - -
1229F TYR* 3.1 11.9 + - - -
1231F ASP* 1.3 76.2 - - - +
1233F ASN* 1.3 62.9 + - - +
1235F ILE* 3.2 6.3 + - - +
1236F ALA* 3.0 19.4 + - - +
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Residues in contact with ASN1233 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388F ARG* 3.5 32.7 + - - +
392F GLN* 4.7 3.0 + - - +
1192F ASP* 3.5 20.1 - - - +
1195F THR* 3.4 13.3 - - - +
1196F GLN* 4.4 18.3 - - - +
1199F LEU* 3.2 35.7 - - + +
1229F TYR 3.0 9.4 + - - +
1230F THR* 3.7 7.0 - - + +
1232F SER* 1.3 76.0 - - - +
1234F ASN* 1.3 57.2 + - - +
1236F ALA* 3.3 1.9 + - - +
1237F SER* 2.9 24.4 + - - -
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Residues in contact with ASN1234 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253F LEU* 6.5 0.2 - - + -
257F MET* 6.2 0.8 - - - +
258F ARG* 4.3 7.3 - - - +
385F ILE* 3.3 25.4 + - + +
388F ARG* 3.0 28.7 + - - +
389F GLY* 4.2 9.0 + - - -
1230F THR* 2.9 42.6 + - - +
1231F ASP* 3.5 13.9 + - - +
1232F SER 3.2 0.2 - - - -
1233F ASN* 1.3 76.7 - - - +
1235F ILE* 1.3 60.2 + - + +
1237F SER* 3.2 3.8 + - - -
1238F LEU* 2.9 35.1 + - + +
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Residues in contact with ILE1235 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217F PHE* 5.1 6.3 - - + +
250F ILE* 5.5 0.7 - - + -
251F GLY 3.2 24.9 - - - +
252F LYS* 3.6 17.9 - - - +
253F LEU* 3.7 32.1 - - + -
254F PRO* 4.2 10.1 - - + -
1231F ASP 2.9 22.1 + - - +
1232F SER* 3.2 4.9 + - - +
1234F ASN* 1.3 77.6 - - + +
1236F ALA* 1.3 63.5 + - - +
1238F LEU* 3.2 16.0 + - + +
1239F PHE* 2.9 42.5 + - + -
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Residues in contact with ALA1236 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1188F LEU* 4.1 4.0 - - + +
1191F LEU* 3.7 25.8 - - + -
1192F ASP* 4.3 15.3 - - - +
1195F THR* 4.3 12.3 - - + -
1232F SER 3.0 14.0 + - - +
1233F ASN* 3.6 9.4 - - - +
1235F ILE* 1.3 77.4 - - - +
1237F SER* 1.3 61.7 + - - +
1239F PHE* 3.1 18.0 + - - +
1240F LEU* 3.0 20.3 + - - +
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Residues in contact with SER1237 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381F ILE* 5.6 1.0 - - - +
385F ILE* 3.1 20.6 - - - +
388F ARG* 3.4 32.8 + - - -
429F MET* 5.2 1.9 - - - -
433F PHE* 6.1 0.3 - - - -
1192F ASP* 4.8 8.7 + - - -
1233F ASN* 2.9 10.5 + - - -
1234F ASN 3.6 2.7 - - - -
1236F ALA* 1.3 76.3 - - - +
1238F LEU* 1.3 58.6 + - - +
1240F LEU* 3.1 13.3 + - - +
1241F THR* 2.9 34.8 + - - -
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Residues in contact with LEU1238 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217F PHE* 4.0 17.0 - - + +
218F LEU* 4.8 19.3 - - + -
254F PRO* 5.4 3.1 - - + -
378F TYR* 4.4 19.4 + - + +
381F ILE* 5.9 0.4 - - + -
382F GLU* 5.1 13.9 - - + -
385F ILE* 3.9 31.0 - - + -
1234F ASN* 2.9 23.5 + - + +
1235F ILE* 3.6 24.2 - - + +
1237F SER* 1.3 73.9 - - - +
1239F PHE* 1.3 65.4 + - - +
1241F THR* 3.8 8.6 - - - +
1242F ALA* 2.9 26.5 + - - +
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Residues in contact with PHE1239 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217F PHE* 3.3 54.3 - + - -
249F ALA 5.3 0.9 - - - -
250F ILE* 3.4 23.3 - - + -
251F GLY 3.3 24.9 - - - -
1188F LEU* 3.5 24.0 - - + -
1191F LEU* 4.5 13.0 - - + -
1235F ILE* 2.9 33.5 + - + -
1236F ALA* 3.2 15.0 - - - +
1238F LEU* 1.3 75.4 - - - +
1240F LEU* 1.3 63.4 + - - +
1242F ALA* 3.7 1.7 - - - +
1243F ALA* 3.0 24.8 + - - +
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Residues in contact with LEU1240 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181F PHE* 5.9 1.8 - - + -
1185F SER* 4.6 13.9 - - - +
1188F LEU* 3.4 28.2 - - + +
1189F GLN* 4.1 20.2 - - - +
1192F ASP* 4.1 13.7 - - - +
1236F ALA 3.0 9.8 + - - +
1237F SER* 3.1 15.7 + - - +
1239F PHE* 1.3 76.2 - - - +
1241F THR* 1.3 61.5 + - - +
1243F ALA* 3.3 4.1 + - + +
1244F ASN* 2.9 35.7 + - + +
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Residues in contact with THR1241 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378F TYR* 3.5 20.4 - - + -
381F ILE* 3.2 56.0 - - + +
385F ILE* 5.4 0.2 - - - +
1237F SER* 2.9 20.8 + - - -
1238F LEU* 3.8 9.3 - - - +
1239F PHE 3.2 0.2 - - - -
1240F LEU* 1.3 76.9 - - - +
1242F ALA* 1.3 67.3 + - - +
1244F ASN* 3.2 4.8 + - - +
1245F ARG* 2.8 37.5 + - + +
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Residues in contact with ALA1242 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217F PHE* 4.1 10.8 - - + -
230F TYR* 4.3 12.5 - - - -
232F TRP* 3.7 29.6 - - + -
233F MET* 4.1 13.0 - - + +
378F TYR* 5.0 3.5 - - + -
1238F LEU 2.9 17.9 + - - +
1239F PHE 3.7 3.1 - - - +
1241F THR* 1.3 76.1 - - - +
1243F ALA* 1.3 63.5 + - - +
1245F ARG* 3.4 1.6 + - - +
1246F TRP* 2.9 24.8 + - - +
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Residues in contact with ALA1243 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233F MET* 5.4 2.2 - - - -
237F ILE* 5.9 7.6 - - + -
1181F PHE* 2.9 32.6 - - + -
1184F ALA* 5.8 5.6 - - + -
1185F SER* 5.9 2.5 - - - -
1188F LEU* 5.4 7.9 - - + -
1239F PHE 3.0 18.4 + - - +
1240F LEU* 3.7 6.3 - - + +
1242F ALA* 1.3 77.5 - - - +
1244F ASN* 1.3 62.7 + - - +
1246F TRP* 3.2 8.4 + - - +
1247F LEU 3.0 14.6 + - - -
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Residues in contact with ASN1244 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377F TYR* 5.0 4.2 + - - -
1181F PHE* 3.7 16.4 - - + -
1240F LEU* 2.9 26.3 + - + +
1241F THR* 3.6 3.8 - - - +
1243F ALA* 1.3 76.6 - - - +
1245F ARG* 1.3 89.1 + - - +
1247F LEU* 3.4 3.6 + - - +
1248F GLU* 2.8 27.2 + - - +
1299F ARG* 4.7 20.3 - - - +
1303F ASP* 5.7 1.8 + - - -
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Residues in contact with ARG1245 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230F TYR* 3.6 36.3 - - + +
374F GLN* 3.3 18.4 + - - +
377F TYR* 3.2 45.4 + - - -
378F TYR* 4.3 7.6 - - + +
381F ILE* 5.1 1.2 - - - +
1241F THR* 2.8 37.1 + - + +
1242F ALA 3.9 1.3 - - - +
1244F ASN* 1.3 120.9 + - - +
1246F TRP* 1.3 61.6 + - - +
1248F GLU* 3.2 26.8 + - - +
1249F VAL* 2.9 34.7 + - - +
1299F ARG* 4.8 7.1 - - - +
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Residues in contact with TRP1246 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229F THR 4.1 0.2 - - - -
230F TYR* 3.1 36.5 - - + -
233F MET* 4.4 5.4 - - + -
234F ASN* 3.2 29.2 - - + +
237F ILE* 4.4 15.3 - - + -
1177F ILE* 5.8 4.9 - - + -
1180F TYR* 4.1 33.2 - + - -
1181F PHE* 4.6 14.8 - + + -
1242F ALA 2.9 17.6 + - - +
1243F ALA* 3.5 8.7 - - - +
1245F ARG* 1.3 76.5 - - - +
1247F LEU* 1.3 76.3 + - + +
1249F VAL* 3.2 4.8 + - - +
1250F ARG* 2.8 77.8 + - + +
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Residues in contact with LEU1247 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177F ILE* 3.7 31.9 - - + +
1178F GLN* 4.7 7.4 - - + +
1181F PHE* 3.4 57.7 - - + -
1182F ARG* 6.2 0.9 - - + -
1243F ALA 3.0 6.5 + - - -
1244F ASN* 3.8 8.1 - - - +
1246F TRP* 1.3 83.3 - - + +
1248F GLU* 1.3 63.4 + - - +
1250F ARG* 4.5 4.9 - - + +
1251F MET* 2.9 32.5 + - + +
1295F ASN* 6.2 0.4 - - - +
1298F VAL* 3.9 26.0 - - + -
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Residues in contact with GLU1248 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374F GLN* 3.0 33.5 - - - +
1244F ASN* 2.8 17.8 + - - +
1245F ARG* 3.2 28.5 + - - +
1247F LEU* 1.3 76.7 - - - +
1249F VAL* 1.3 62.7 + - - +
1252F GLU* 2.9 17.2 + - + +
1295F ASN* 2.6 61.8 + - - +
1296F TRP* 5.3 1.4 + - - -
1299F ARG* 3.9 19.8 + - - +
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Residues in contact with VAL1249 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228F GLY 4.4 7.0 - - - +
229F THR* 3.8 10.1 - - - +
230F TYR* 4.1 17.3 - - + -
371F THR* 6.0 1.1 - - - +
374F GLN* 3.7 26.0 - - + +
1245F ARG 2.9 21.5 + - - +
1246F TRP* 3.5 5.4 - - - +
1248F GLU* 1.3 76.0 - - - +
1250F ARG* 1.3 81.7 + - - +
1252F GLU* 3.2 7.4 + - - +
1253F TYR* 3.0 54.2 + - + +
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Residues in contact with ARG1250 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229F THR* 3.8 17.2 + - - +
230F TYR 4.6 0.4 + - - -
231F TRP* 3.6 32.5 - - - -
234F ASN* 4.2 1.0 - - - +
1177F ILE* 4.9 9.0 - - + -
1246F TRP* 2.8 66.0 + - + +
1247F LEU* 3.8 13.2 - - + +
1249F VAL* 1.3 99.9 - - - +
1251F MET* 1.3 62.7 + - - +
1253F TYR* 3.1 14.8 + - - +
1254F ILE* 3.0 27.9 + - + +
----------------------------------------------------------
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Residues in contact with MET1251 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174F CYS* 3.4 29.4 - - - +
1177F ILE* 3.4 30.3 - - - -
1178F GLN* 4.8 3.6 - - - +
1247F LEU* 2.9 36.7 + - + +
1248F GLU 3.9 2.7 - - - +
1250F ARG* 1.3 74.4 - - - +
1252F GLU* 1.3 64.0 + - - +
1254F ILE* 3.2 17.8 + - + +
1255F GLY* 3.0 18.4 + - - -
1294F LEU* 3.6 32.9 - - + +
1295F ASN* 4.3 15.5 - - - +
1298F VAL* 3.7 22.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU1252 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366F LEU* 5.4 1.0 - - - +
370F ARG* 2.9 58.9 + - + +
374F GLN* 6.4 0.9 - - + -
1248F GLU* 2.9 21.7 + - + +
1249F VAL* 3.2 7.6 + - - +
1251F MET* 1.3 77.7 - - - +
1253F TYR* 1.3 66.2 + - + +
1255F GLY* 3.0 2.9 + - - +
1256F ALA* 2.9 27.9 + - + +
1291F SER* 3.2 30.4 + - - +
1292F ASN 5.3 0.3 - - - +
1295F ASN* 3.9 16.9 + - - +
----------------------------------------------------------
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Residues in contact with TYR1253 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229F THR* 4.3 11.0 + - - -
367F LEU* 3.9 38.8 + - + +
370F ARG* 5.5 0.4 - - + -
371F THR* 3.7 28.3 + - - -
1249F VAL* 3.0 42.3 + - + +
1250F ARG* 3.1 16.1 + - - +
1252F GLU* 1.3 84.4 - - + +
1254F ILE* 1.3 66.1 + - - +
1256F ALA* 3.3 5.1 + - + +
1257F CYS* 3.0 31.5 + - - -
----------------------------------------------------------
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Residues in contact with ILE1254 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170F LEU* 3.8 31.8 - - + +
1173F VAL* 4.8 8.7 - - + -
1174F CYS* 4.4 21.5 - - + +
1177F ILE* 4.4 8.7 - - + -
1250F ARG* 3.0 14.1 + - + +
1251F MET* 3.3 37.9 - - + +
1253F TYR* 1.3 76.1 - - - +
1255F GLY* 1.3 63.7 + - - +
1257F CYS* 3.2 9.4 + - - +
1258F VAL* 2.9 28.0 + - + +
1294F LEU* 5.6 6.3 - - + -
----------------------------------------------------------
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Residues in contact with GLY1255 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1251F MET 3.0 13.7 + - - -
1252F GLU* 3.0 4.2 + - - -
1254F ILE* 1.3 76.9 - - - +
1256F ALA* 1.3 57.7 + - - +
1258F VAL* 3.1 11.2 + - - +
1259F VAL* 2.9 31.2 + - - +
1290F VAL* 5.5 4.0 - - - -
1291F SER* 3.8 23.6 - - - -
1294F LEU* 5.5 6.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA1256 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363F PHE* 3.1 27.9 - - + -
366F LEU* 5.1 13.0 - - + -
367F LEU* 4.1 20.6 - - + +
1252F GLU* 2.9 15.4 + - + +
1253F TYR* 3.7 8.1 - - + +
1255F GLY* 1.3 72.5 - - - +
1257F CYS* 1.3 67.2 + - - +
1259F VAL* 3.2 8.0 + - - +
1260F LEU 3.0 18.7 + - - -
1291F SER* 4.0 7.3 + - - +
----------------------------------------------------------
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Residues in contact with CYS1257 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363F PHE* 3.9 17.5 - - - -
1170F LEU* 4.8 12.3 - - + -
1253F TYR* 3.0 22.7 + - - -
1254F ILE* 3.5 10.3 - - - +
1256F ALA* 1.3 76.2 - - - +
1258F VAL* 1.3 64.6 + - - +
1260F LEU* 3.3 3.7 + - - +
1261F ILE* 2.9 36.1 + - + +
----------------------------------------------------------
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Residues in contact with VAL1258 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153F LEU* 5.9 1.6 - - + -
1156F ILE* 4.4 13.2 - - + -
1163F PHE* 3.8 24.4 - - + -
1167F LEU* 5.4 7.0 - - + -
1170F LEU* 4.7 15.5 - - + -
1254F ILE* 2.9 30.4 + - + +
1255F GLY* 3.3 12.1 - - - +
1257F CYS* 1.3 76.5 - - - +
1259F VAL* 1.3 65.8 + - - +
1261F ILE* 3.3 7.8 + - - +
1262F ALA* 3.0 22.3 + - - +
1287F ALA* 4.9 6.5 - - + +
1290F VAL* 4.8 18.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL1259 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362F LEU* 4.8 7.6 - - + -
363F PHE* 5.6 4.5 - - + +
366F LEU* 4.4 14.8 - - + -
1255F GLY 2.9 15.5 + - - +
1256F ALA* 3.2 8.9 + - - +
1258F VAL* 1.3 75.2 - - + +
1260F LEU* 1.3 65.5 + - - +
1262F ALA* 3.3 1.7 + - - +
1263F ALA* 2.9 26.2 + - + +
1284F LEU* 4.8 1.3 - - + +
1287F ALA* 3.1 40.6 - - + +
1288F LEU* 3.9 25.4 - - + +
1291F SER* 3.4 14.1 - - - +
----------------------------------------------------------
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Residues in contact with LEU1260 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359F ALA* 4.5 5.4 - - + +
360F VAL* 4.0 27.4 - - + +
363F PHE* 3.4 57.2 - - + -
1256F ALA 3.0 8.8 + - - +
1257F CYS* 3.7 4.9 - - - +
1259F VAL* 1.3 78.6 - - - +
1261F ILE* 1.3 65.4 + - + +
1263F ALA* 3.3 3.2 + - + +
1264F VAL* 2.9 45.5 + - + +
----------------------------------------------------------
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Residues in contact with ILE1261 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163F PHE* 3.5 24.7 - - + -
1166F ALA* 3.6 26.7 - - + -
1170F LEU* 4.7 17.9 - - + -
1257F CYS* 2.9 31.5 + - + +
1258F VAL* 3.7 7.0 - - - +
1260F LEU* 1.3 77.1 - - + +
1262F ALA* 1.3 64.4 + - - +
1264F VAL* 3.9 4.0 - - - +
1265F THR* 2.8 37.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA1262 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156F ILE* 5.2 8.5 - - + -
1160F THR* 5.3 4.5 - - + -
1163F PHE* 4.0 19.0 - - + -
1258F VAL 3.0 18.7 + - - +
1259F VAL 3.7 3.1 - - - +
1261F ILE* 1.3 77.6 - - - +
1263F ALA* 1.3 63.3 + - - +
1265F THR* 3.9 2.5 - - - -
1266F SER* 2.7 34.1 + - - +
1283F GLY 4.8 8.1 - - - +
1284F LEU* 5.1 3.1 - - - -
1287F ALA* 3.9 18.2 - - + -
----------------------------------------------------------
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Residues in contact with ALA1263 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 5.2 6.5 - - + -
359F ALA* 4.0 24.5 - - + +
362F LEU* 6.5 1.3 - - + -
1259F VAL* 2.9 21.6 + - + +
1260F LEU* 3.7 5.4 - - + +
1262F ALA* 1.3 77.6 - - - +
1264F VAL* 1.3 63.9 + - + +
1266F SER* 3.8 2.0 - - - -
1267F ILE* 2.9 32.0 + - + +
1284F LEU* 4.6 20.8 - - + +
----------------------------------------------------------
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Residues in contact with VAL1264 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR* 4.6 23.3 - - + +
359F ALA* 5.5 5.6 - - + -
360F VAL* 6.1 0.9 - - + -
1260F LEU* 2.9 41.5 + - + +
1261F ILE* 3.9 4.5 - - - +
1263F ALA* 1.3 78.0 - - + +
1265F THR* 1.3 66.6 + - - +
1267F ILE* 3.3 4.0 + - - +
1268F SER* 3.0 26.7 + - - +
----------------------------------------------------------
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Residues in contact with THR1265 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160F THR* 3.2 26.2 - - + +
1162F VAL* 3.7 28.7 - - + +
1163F PHE* 4.8 5.1 - - - +
1261F ILE* 2.8 30.1 + - - +
1262F ALA* 3.9 4.3 - - - -
1264F VAL* 1.3 78.4 - - - +
1266F SER* 1.3 62.6 + - - +
1268F SER* 2.7 22.4 + - - +
1269F ASN* 2.9 13.3 + - + +
----------------------------------------------------------
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Residues in contact with SER1266 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159F VAL* 5.2 4.5 - - - +
1160F THR* 3.9 21.8 - - - +
1262F ALA* 2.7 23.6 + - - +
1263F ALA* 3.8 3.6 - - - -
1265F THR* 1.3 78.5 - - - +
1267F ILE* 1.3 57.7 + - - +
1269F ASN* 3.9 3.4 - - - +
1270F SER* 2.9 34.1 + - - -
1275F LEU* 4.5 2.6 - - - +
1280F VAL* 3.5 36.1 + - - +
1283F GLY* 5.4 1.0 - - - -
1284F LEU* 5.3 3.8 + - - -
----------------------------------------------------------
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Residues in contact with ILE1267 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 3.5 35.4 - - + +
327F LEU* 4.0 12.5 - - + +
355F ALA* 4.4 25.4 - - + +
356F TYR* 4.1 19.5 - - + +
359F ALA* 5.5 3.6 - - + -
1263F ALA* 2.9 26.8 + - + +
1264F VAL* 3.8 4.0 - - - +
1266F SER* 1.3 75.7 - - - +
1268F SER* 1.3 67.4 + - - +
1270F SER* 4.7 1.3 - - - -
1271F LEU* 3.0 48.0 + - + +
1280F VAL* 3.7 14.6 - - + -
1284F LEU* 5.7 0.4 - - + -
----------------------------------------------------------
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Residues in contact with SER1268 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR* 3.6 23.5 + - - -
1264F VAL* 3.0 15.6 + - - +
1265F THR* 2.7 26.3 + - - +
1267F ILE* 1.3 75.6 - - - +
1269F ASN* 1.3 65.0 + - - +
1272F HIS* 2.9 37.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN1269 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159F VAL 5.5 0.4 + - - -
1160F THR* 4.9 11.7 + - - +
1161F PRO* 5.2 9.1 - - - +
1162F VAL* 5.0 11.4 - - + +
1265F THR* 2.9 17.3 + - + +
1266F SER* 3.9 2.2 - - - +
1268F SER* 1.3 81.7 + - - +
1270F SER* 1.3 52.7 + - - +
1272F HIS* 4.8 1.3 - - - -
1273F ARG* 2.3 72.7 + - - +
1275F LEU* 3.4 20.4 - - + +
----------------------------------------------------------
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Residues in contact with SER1270 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327F LEU* 3.4 26.8 - - - +
1266F SER 2.9 21.6 + - - -
1267F ILE 4.0 0.2 - - - -
1269F ASN* 1.3 75.9 - - - +
1271F LEU* 1.3 64.9 + - - +
1272F HIS 3.1 0.2 + - - -
1273F ARG 3.1 7.4 - - - -
1274F GLU* 3.1 23.2 - - - +
1275F LEU* 3.4 16.6 + - - +
1277F ALA* 3.8 7.1 + - - +
1280F VAL* 3.4 22.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU1271 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327F LEU* 4.4 22.9 - - + +
353F ALA* 5.4 5.8 - - + -
355F ALA* 5.7 2.9 - - + -
356F TYR* 4.0 15.5 - - + +
1267F ILE* 3.0 45.0 + - + +
1268F SER 3.9 0.7 - - - +
1270F SER* 1.3 80.7 - - - +
1272F HIS* 1.3 94.1 + - + +
----------------------------------------------------------
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Residues in contact with HIS1272 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR* 3.7 9.9 + - - -
1268F SER* 2.9 38.4 + - - +
1269F ASN* 3.8 1.6 - - - +
1271F LEU* 1.3 103.7 - - + +
1273F ARG* 1.3 60.0 + - + +
1274F GLU* 3.9 6.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG1273 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1269F ASN* 2.3 58.5 + - - +
1270F SER* 3.1 2.3 - - - +
1272F HIS* 1.3 69.4 - - + +
1274F GLU* 1.3 74.8 - - - +
1275F LEU* 3.4 4.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il