Contacts of the helix formed by residues 1218 - 1273 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1218 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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768G PRO* 4.2 17.6 - - + +
789G PHE* 3.3 47.8 - + + -
790G GLU* 4.9 12.6 - - + -
845G GLN* 3.2 22.6 + - - -
1213G ILE* 3.8 10.3 + - + +
1216G PHE* 3.0 25.1 - - + -
1217G ARG* 1.3 79.9 - - - +
1219G GLU* 1.3 53.6 + - - +
1220G ALA* 3.2 3.8 - - - -
1221G ARG* 2.7 40.5 + - + +
1222G PHE* 3.5 7.7 + - + +
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Residues in contact with GLU1219 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400G MET* 3.1 48.3 - - + +
401G HIS* 4.9 9.7 + - - -
1213G ILE* 4.4 8.1 + - + +
1214G ARG* 5.9 3.5 - - - +
1217G ARG* 3.3 32.2 + - - +
1218G TYR* 1.3 75.7 - - - +
1220G ALA* 1.3 68.5 + - + +
1221G ARG 3.1 0.5 + - - -
1222G PHE* 3.2 3.6 + - - +
1223G GLN* 2.9 37.0 + - - +
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Residues in contact with ALA1220 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1217G ARG 5.1 0.2 + - - -
1218G TYR 3.1 1.0 + - - -
1219G GLU* 1.3 85.0 - - + +
1221G ARG* 1.3 57.7 + - - +
1223G GLN* 3.3 16.7 + - - +
1224G GLN* 2.9 41.2 + - + +
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Residues in contact with ARG1221 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790G GLU* 4.7 21.4 - - + +
1218G TYR* 2.7 31.7 + - + +
1220G ALA* 1.3 73.0 - - - +
1222G PHE* 1.3 69.4 + - + +
1224G GLN* 3.1 32.2 + - - +
1225G LYS* 2.9 62.0 + - + +
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Residues in contact with PHE1222 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396G TYR* 3.1 22.5 + - - +
400G MET* 4.9 3.1 - - + -
777G TRP* 5.8 1.8 - + - -
779G LEU* 4.3 22.2 - - + -
789G PHE* 3.7 28.9 - + - -
790G GLU* 6.0 3.4 - - + -
1202G HIS* 3.6 14.4 + + + -
1213G ILE* 3.4 49.6 - - + -
1218G TYR* 3.5 5.5 + - + +
1219G GLU 3.2 6.2 + - - +
1221G ARG* 1.3 84.4 - - + +
1223G GLN* 1.3 60.3 + - - +
1225G LYS* 3.4 32.4 - - + +
1226G LEU* 2.9 26.9 + - - +
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Residues in contact with GLN1223 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 3.6 25.8 + - + -
397G ASN* 4.7 13.6 + - - +
400G MET* 4.0 25.3 - - + +
401G HIS* 5.8 1.0 + - - -
1219G GLU* 2.9 35.2 + - - +
1220G ALA* 3.4 19.4 - - - +
1221G ARG 3.2 0.2 - - - -
1222G PHE* 1.3 76.8 - - - +
1224G GLN* 1.3 64.2 + - + +
1226G LEU* 3.3 2.1 + - - +
1227G LEU* 2.9 40.5 + - + +
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Residues in contact with GLN1224 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1220G ALA* 2.9 26.3 + - + +
1221G ARG* 3.2 26.7 - - - +
1223G GLN* 1.3 81.2 + - - +
1225G LYS* 1.3 64.2 + - - +
1227G LEU* 3.2 23.4 + - - +
1228G GLU* 2.9 22.4 + - - +
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Residues in contact with LYS1225 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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779G LEU* 6.5 0.7 - - - -
1202G HIS* 4.6 8.1 - - + -
1221G ARG* 2.9 41.3 + - + +
1222G PHE* 3.4 41.5 - - + +
1223G GLN 3.3 0.2 - - - -
1224G GLN* 1.3 76.4 - - - +
1226G LEU* 1.3 56.8 + - - +
1228G GLU* 3.2 9.6 + - - +
1229G TYR* 2.9 58.3 + - + -
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Residues in contact with LEU1226 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392G GLN 4.4 7.4 - - - +
393G THR* 5.3 2.9 - - - -
396G TYR* 3.3 39.9 - - + -
1199G LEU* 4.0 10.1 - - + -
1202G HIS* 3.9 18.5 + - + +
1203G PHE* 3.4 36.8 - - + -
1222G PHE 2.9 17.3 + - - +
1223G GLN 3.9 3.1 - - - +
1225G LYS* 1.3 73.4 - - - +
1227G LEU* 1.3 70.0 + - + +
1229G TYR* 3.1 18.5 + - + -
1230G THR* 2.8 30.6 + - - +
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Residues in contact with LEU1227 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258G ARG* 5.2 8.7 - - + +
259G ALA* 5.1 15.7 - - + -
393G THR* 4.4 29.4 - - + +
396G TYR* 5.8 2.7 - - + -
1223G GLN* 2.9 32.6 + - + +
1224G GLN* 3.5 30.7 - - - +
1226G LEU* 1.3 81.5 - - + +
1228G GLU* 1.3 57.5 + - - +
1230G THR* 3.3 5.4 + - - -
1231G ASP* 2.8 41.2 + - - +
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Residues in contact with GLU1228 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1224G GLN 2.9 13.1 + - - +
1225G LYS* 3.4 9.6 - - - +
1226G LEU 3.1 0.2 - - - -
1227G LEU* 1.3 76.1 - - - +
1229G TYR* 1.3 92.0 + - - +
1231G ASP* 3.3 11.0 + - + +
1232G SER* 2.7 46.4 + - - -
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Residues in contact with TYR1229 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1195G THR 4.8 3.1 - - - +
1198G PRO* 4.2 25.1 - - + -
1199G LEU* 3.6 20.7 - - + +
1202G HIS* 3.6 40.1 + + + -
1225G LYS* 2.9 44.9 + - + -
1226G LEU* 3.1 13.9 + - + +
1228G GLU* 1.3 95.6 + - - +
1230G THR* 1.3 62.7 + - - +
1232G SER* 3.1 8.4 + - - -
1233G ASN* 3.0 22.2 + - - +
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Residues in contact with THR1230 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258G ARG* 5.1 3.8 - - + -
389G GLY* 3.6 22.9 - - - +
392G GLN* 3.3 29.4 + - - +
393G THR* 5.3 4.6 + - - +
1199G LEU* 4.1 5.9 - - - +
1226G LEU* 2.8 35.5 + - - +
1227G LEU* 3.7 5.8 - - - -
1229G TYR* 1.3 69.7 - - - +
1231G ASP* 1.3 62.0 + - - +
1233G ASN* 3.2 4.7 + - + +
1234G ASN* 2.9 50.3 + - - +
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Residues in contact with ASP1231 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253G LEU* 3.3 38.6 - - + +
257G MET* 3.7 1.9 - - - +
258G ARG* 3.2 30.3 - - - +
1227G LEU* 2.8 35.3 + - - +
1228G GLU* 3.5 9.5 + - + +
1230G THR* 1.3 75.1 - - - +
1232G SER* 1.3 57.3 + - - +
1234G ASN* 3.2 7.5 + - - +
1235G ILE* 2.9 35.1 + - - +
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Residues in contact with SER1232 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253G LEU* 5.8 0.4 - - - -
1195G THR* 3.4 22.1 - - - +
1228G GLU* 2.7 38.7 + - - -
1229G TYR* 3.1 12.5 + - - -
1231G ASP* 1.3 76.7 - - - +
1233G ASN* 1.3 62.8 + - - +
1235G ILE* 3.2 5.9 + - - +
1236G ALA* 3.0 20.3 + - - +
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Residues in contact with ASN1233 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388G ARG* 3.5 31.9 + - - +
392G GLN* 4.7 3.0 + - - +
1192G ASP* 3.5 20.3 - - - +
1195G THR* 3.4 13.8 - - - +
1196G GLN* 4.4 17.7 - - - +
1199G LEU* 3.2 35.4 - - + +
1229G TYR 3.0 8.8 + - - +
1230G THR* 3.7 8.1 - - + +
1232G SER* 1.3 76.3 - - - +
1234G ASN* 1.3 58.1 + - - +
1236G ALA* 3.3 1.7 + - - +
1237G SER* 2.9 23.6 + - - -
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Residues in contact with ASN1234 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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257G MET* 6.2 1.0 - - - +
258G ARG* 4.3 7.5 - - - +
385G ILE* 3.3 25.3 + - + +
388G ARG* 3.0 28.7 + - - +
389G GLY* 4.2 8.8 + - - -
1230G THR* 2.9 43.0 + - - +
1231G ASP* 3.5 13.9 + - - +
1232G SER 3.2 0.2 - - - -
1233G ASN* 1.3 76.9 - - - +
1235G ILE* 1.3 62.9 + - + +
1237G SER* 3.2 3.8 + - - -
1238G LEU* 2.9 35.6 + - + +
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Residues in contact with ILE1235 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 5.1 6.5 - - + +
250G ILE* 5.5 0.4 - - + -
251G GLY 3.2 24.7 - - - +
252G LYS 3.6 17.7 - - - +
253G LEU* 3.7 32.8 - - + -
254G PRO* 4.2 10.5 - - + -
1231G ASP 2.9 16.2 + - - +
1232G SER* 3.2 5.1 + - - +
1234G ASN* 1.3 79.0 - - + +
1236G ALA* 1.3 63.4 + - - +
1238G LEU* 3.2 17.5 + - + +
1239G PHE* 2.9 42.2 + - + -
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Residues in contact with ALA1236 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1188G LEU* 4.1 4.0 - - - +
1191G LEU* 3.7 24.9 - - + -
1192G ASP* 4.3 16.2 - - + +
1195G THR* 4.3 13.0 - - + -
1232G SER 3.0 13.4 + - - +
1233G ASN* 3.6 9.0 - - - +
1235G ILE* 1.3 76.3 - - - +
1237G SER* 1.3 61.6 + - - +
1239G PHE* 3.1 18.2 + - - +
1240G LEU* 3.0 20.4 + - - +
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Residues in contact with SER1237 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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381G ILE* 5.6 1.0 - - - +
385G ILE* 3.1 21.1 - - - +
388G ARG* 3.4 31.8 + - - -
429G MET* 5.2 1.6 - - - -
433G PHE* 6.1 0.3 - - - -
1192G ASP* 4.8 8.7 + - - -
1233G ASN* 2.9 10.8 + - - -
1234G ASN 3.6 2.7 - - - -
1236G ALA* 1.3 76.4 - - - +
1238G LEU* 1.3 58.0 + - - +
1240G LEU* 3.1 13.6 + - - +
1241G THR* 2.9 35.3 + - - -
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Residues in contact with LEU1238 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 4.0 16.6 - - + +
218G LEU* 4.8 19.3 - - + -
254G PRO* 5.4 2.7 - - + -
378G TYR* 4.4 19.6 + - + +
381G ILE* 6.3 0.4 - - + -
382G GLU* 5.1 13.0 - - + -
385G ILE* 3.9 32.8 - - + -
1234G ASN* 2.9 22.3 + - + +
1235G ILE* 3.6 23.6 - - + +
1236G ALA 3.2 0.2 - - - -
1237G SER* 1.3 75.0 - - - +
1239G PHE* 1.3 65.5 + - - +
1241G THR* 3.8 8.1 - - - +
1242G ALA* 2.9 26.3 + - - +
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Residues in contact with PHE1239 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 3.3 53.2 - + - -
249G ALA 5.3 0.4 - - - -
250G ILE* 3.4 22.9 - - + -
251G GLY 3.3 24.5 - - - -
1188G LEU* 3.5 24.2 - - + -
1191G LEU* 4.5 13.2 - - + -
1235G ILE* 2.9 34.1 + - + -
1236G ALA* 3.2 15.3 - - - +
1238G LEU* 1.3 76.8 - - - +
1240G LEU* 1.3 64.0 + - - +
1242G ALA* 3.7 1.6 - - - +
1243G ALA* 3.0 24.6 + - - +
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Residues in contact with LEU1240 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181G PHE* 5.9 2.0 - - + -
1185G SER* 4.6 13.9 - - - +
1188G LEU* 3.4 28.6 - - + +
1189G GLN* 4.1 20.9 - - - +
1192G ASP* 4.1 13.0 - - - +
1236G ALA 3.0 9.5 + - - +
1237G SER* 3.2 15.9 - - - +
1239G PHE* 1.3 76.5 - - - +
1241G THR* 1.3 61.6 + - - +
1243G ALA* 3.3 4.3 + - + +
1244G ASN* 2.9 36.4 + - + +
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Residues in contact with THR1241 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378G TYR* 3.5 21.1 - - + -
381G ILE* 3.2 55.7 - - + +
1237G SER* 2.9 20.5 + - - -
1238G LEU* 3.8 9.9 - - + +
1239G PHE 3.2 0.2 - - - -
1240G LEU* 1.3 75.5 - - - +
1242G ALA* 1.3 67.6 + - - +
1244G ASN* 3.2 5.4 + - - +
1245G ARG* 2.8 38.1 + - + +
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Residues in contact with ALA1242 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 4.1 10.5 - - + -
230G TYR* 4.3 12.3 - - - -
232G TRP* 3.7 31.0 - - + -
233G MET* 4.1 12.5 - - + +
378G TYR* 5.0 4.3 - - + -
1238G LEU 2.9 17.6 + - - +
1239G PHE 3.7 3.6 - - - +
1241G THR* 1.3 77.1 - - - +
1243G ALA* 1.3 63.4 + - - +
1245G ARG* 3.8 1.4 - - - +
1246G TRP* 2.9 24.3 + - - +
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Residues in contact with ALA1243 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233G MET* 5.4 2.7 - - - -
237G ILE* 5.9 7.2 - - + -
1181G PHE* 2.9 33.4 - - + -
1184G ALA* 5.8 5.2 - - + -
1185G SER* 5.9 2.5 - - - -
1188G LEU* 5.4 7.6 - - + -
1239G PHE 3.0 17.0 + - - +
1240G LEU* 3.7 5.8 - - + +
1242G ALA* 1.3 77.4 - - - +
1244G ASN* 1.3 64.1 + - - +
1246G TRP* 3.2 9.2 + - - +
1247G LEU 3.0 14.9 + - - -
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Residues in contact with ASN1244 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377G TYR* 5.0 3.8 + - - -
1181G PHE* 3.7 17.1 - - + -
1240G LEU* 2.9 26.8 + - + +
1241G THR* 3.6 3.1 - - - +
1243G ALA* 1.3 76.4 - - - +
1245G ARG* 1.3 87.5 + - - +
1247G LEU* 3.4 4.0 + - - +
1248G GLU* 2.9 27.9 + - - +
1299G ARG* 4.7 20.0 - - - +
1303G ASP* 5.7 2.2 + - - -
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Residues in contact with ARG1245 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230G TYR* 3.6 37.5 - - + +
374G GLN* 3.3 17.6 + - - +
377G TYR* 3.2 43.8 + - - -
378G TYR* 4.3 8.1 - - + +
381G ILE* 5.1 1.2 - - - +
1241G THR* 2.8 36.7 + - + +
1242G ALA 3.9 1.3 - - - +
1244G ASN* 1.3 122.3 + - - +
1246G TRP* 1.3 61.1 + - - +
1248G GLU* 3.2 26.8 + - - +
1249G VAL* 2.9 34.7 + - - +
1299G ARG* 4.8 7.1 - - - +
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Residues in contact with TRP1246 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229G THR 4.1 0.2 - - - -
230G TYR* 3.1 35.3 - - + -
233G MET* 4.4 5.2 - - + -
234G ASN* 3.2 29.6 - - + +
237G ILE* 4.4 15.7 - - + -
1177G ILE* 5.8 4.9 - - + -
1180G TYR* 4.1 33.2 - + - -
1181G PHE* 4.6 13.7 - + + -
1242G ALA 2.9 18.3 + - - +
1243G ALA* 3.5 8.7 - - - +
1245G ARG* 1.3 76.1 - - - +
1247G LEU* 1.3 77.4 + - + +
1249G VAL* 3.2 4.8 + - - +
1250G ARG* 2.8 79.6 + - + +
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Residues in contact with LEU1247 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177G ILE* 3.7 31.2 - - + +
1178G GLN* 4.7 8.1 - - + +
1181G PHE* 3.4 56.5 - - + -
1182G ARG* 6.2 0.4 - - + -
1243G ALA 3.0 6.7 + - - -
1244G ASN* 3.8 7.9 - - - +
1246G TRP* 1.3 82.7 - - + +
1248G GLU* 1.3 64.6 + - - +
1250G ARG* 3.2 6.2 + - + +
1251G MET* 2.9 32.6 + - + +
1295G ASN* 6.2 0.2 - - - +
1298G VAL* 3.9 27.4 - - + -
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Residues in contact with GLU1248 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374G GLN* 3.0 33.4 - - - +
1244G ASN* 2.9 17.1 + - - +
1245G ARG* 3.2 28.1 + - - +
1247G LEU* 1.3 76.2 - - - +
1249G VAL* 1.3 62.1 + - - +
1252G GLU* 2.9 17.4 + - + +
1295G ASN* 2.6 61.3 + - - +
1296G TRP* 5.3 1.4 - - - -
1299G ARG* 3.9 20.2 + - - +
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Residues in contact with VAL1249 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228G GLY 4.4 6.3 - - - +
229G THR* 3.8 9.9 - - - +
230G TYR* 4.1 17.5 - - + -
371G THR* 6.0 1.3 - - - +
374G GLN* 3.7 26.7 - - + +
1245G ARG 2.9 21.6 + - - +
1246G TRP* 3.2 5.8 + - - +
1248G GLU* 1.3 74.6 - - - +
1250G ARG* 1.3 81.1 + - - +
1252G GLU* 3.2 8.2 + - - +
1253G TYR* 3.0 54.6 + - + +
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Residues in contact with ARG1250 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229G THR* 3.8 18.2 + - - +
230G TYR 4.6 0.2 + - - -
231G TRP* 3.6 32.1 - - - -
234G ASN* 4.2 0.8 - - - +
1177G ILE* 4.9 9.0 - - + -
1246G TRP* 2.8 66.2 + - + +
1247G LEU* 3.2 11.9 + - + +
1249G VAL* 1.3 101.4 - - - +
1251G MET* 1.3 63.1 + - - +
1253G TYR* 3.1 14.5 + - - +
1254G ILE* 3.0 28.2 + - + +
----------------------------------------------------------
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Residues in contact with MET1251 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174G CYS* 3.4 29.4 - - - +
1177G ILE* 3.4 30.5 - - - -
1178G GLN* 4.8 3.6 - - - +
1247G LEU* 2.9 36.1 + - + +
1248G GLU 3.9 2.5 - - - +
1250G ARG* 1.3 75.8 - - - +
1252G GLU* 1.3 63.0 + - - +
1254G ILE* 3.2 17.5 + - + +
1255G GLY* 3.0 18.7 + - - -
1294G LEU* 3.6 32.1 - - + +
1295G ASN* 4.3 16.4 - - - +
1298G VAL* 3.7 22.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU1252 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366G LEU* 5.4 1.0 - - - +
367G LEU* 6.5 0.2 - - - -
370G ARG* 2.9 58.3 + - + +
374G GLN* 6.4 1.6 - - + -
1248G GLU* 2.9 21.3 + - + +
1249G VAL* 3.2 7.8 + - - +
1251G MET* 1.3 78.3 - - - +
1253G TYR* 1.3 66.4 + - + +
1255G GLY* 3.0 2.5 + - - +
1256G ALA* 2.9 28.5 + - + +
1291G SER* 3.1 30.8 + - - +
1292G ASN 5.3 0.3 - - - +
1295G ASN* 3.9 16.5 + - - +
----------------------------------------------------------
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Residues in contact with TYR1253 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229G THR* 4.3 10.8 + - - -
367G LEU* 3.9 39.7 + - + +
370G ARG* 5.5 0.2 - - + -
371G THR* 3.7 27.9 + - - -
1249G VAL* 3.0 43.3 + - + +
1250G ARG* 3.1 15.2 + - - +
1252G GLU* 1.3 84.9 - - + +
1254G ILE* 1.3 66.1 + - - +
1256G ALA* 3.3 4.9 + - + +
1257G CYS* 3.0 32.1 + - - -
----------------------------------------------------------
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Residues in contact with ILE1254 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170G LEU* 3.8 31.8 - - + +
1173G VAL* 4.8 9.0 - - + -
1174G CYS* 4.4 21.1 - - + +
1177G ILE* 4.4 8.1 - - + -
1250G ARG* 3.0 14.8 + - + +
1251G MET* 3.3 38.1 - - + +
1253G TYR* 1.3 76.5 - - - +
1255G GLY* 1.3 62.7 + - - +
1257G CYS* 3.2 10.0 + - - +
1258G VAL* 2.9 27.9 + - + +
1294G LEU* 5.6 6.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY1255 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1251G MET 3.0 13.9 + - - -
1252G GLU* 3.0 4.4 + - - -
1254G ILE* 1.3 77.1 - - - +
1256G ALA* 1.3 56.7 + - - +
1258G VAL* 3.1 10.8 + - - +
1259G VAL* 2.9 31.5 + - - +
1290G VAL* 5.5 4.0 - - - -
1291G SER* 3.8 23.4 - - - -
1294G LEU* 5.5 6.3 - - - +
----------------------------------------------------------
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Residues in contact with ALA1256 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363G PHE* 3.1 28.1 - - + -
366G LEU* 5.1 14.1 - - + -
367G LEU* 4.1 20.4 - - + +
1252G GLU* 2.9 15.2 + - + +
1253G TYR* 3.7 7.9 - - + +
1254G ILE 3.2 0.2 - - - -
1255G GLY* 1.3 72.3 - - - +
1257G CYS* 1.3 66.5 + - - +
1259G VAL* 3.2 6.8 + - - +
1260G LEU 3.0 19.4 + - - -
1291G SER* 4.0 7.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS1257 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363G PHE* 3.9 17.9 - - - -
1170G LEU* 4.8 11.9 - - + -
1253G TYR* 3.0 22.5 + - - -
1254G ILE* 3.2 10.3 + - - +
1256G ALA* 1.3 75.2 - - - +
1258G VAL* 1.3 63.4 + - - +
1260G LEU* 3.3 3.6 + - - +
1261G ILE* 2.9 36.5 + - + +
----------------------------------------------------------
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Residues in contact with VAL1258 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153G LEU* 5.9 2.0 - - + -
1156G ILE* 4.4 13.2 - - + -
1163G PHE* 3.8 24.6 - - + -
1167G LEU* 5.4 7.0 - - + -
1170G LEU* 4.7 15.3 - - + -
1254G ILE* 2.9 30.6 + - + +
1255G GLY* 3.1 11.9 + - - +
1257G CYS* 1.3 76.9 - - - +
1259G VAL* 1.3 64.4 + - - +
1261G ILE* 3.3 8.0 + - + +
1262G ALA* 3.0 22.5 + - - +
1287G ALA* 4.9 7.0 - - + +
1290G VAL* 4.8 18.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL1259 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362G LEU* 4.8 7.4 - - + -
363G PHE* 5.6 4.7 - - + -
366G LEU* 4.4 14.6 - - + -
1255G GLY 2.9 15.7 + - - +
1256G ALA* 3.2 9.2 + - - +
1258G VAL* 1.3 75.5 - - - +
1260G LEU* 1.3 65.9 + - - +
1262G ALA* 3.3 1.7 + - - +
1263G ALA* 2.9 25.8 + - + +
1284G LEU* 4.8 1.5 - - + +
1287G ALA* 3.1 40.4 - - + +
1288G LEU* 3.9 24.7 - - + +
1291G SER* 3.4 13.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1260 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359G ALA* 4.5 4.7 - - + +
360G VAL* 4.0 27.6 - - + +
363G PHE* 3.4 56.1 - - + -
1256G ALA 3.0 8.0 + - - +
1257G CYS* 3.7 5.4 - - - +
1258G VAL 3.2 0.2 - - - -
1259G VAL* 1.3 78.2 - - - +
1261G ILE* 1.3 65.1 + - + +
1263G ALA* 3.3 3.5 + - + +
1264G VAL* 2.9 46.9 + - + +
----------------------------------------------------------
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Residues in contact with ILE1261 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163G PHE* 3.5 24.7 - - + -
1166G ALA* 3.6 26.9 - - + +
1170G LEU* 4.7 18.4 - - + -
1257G CYS* 2.9 31.2 + - + +
1258G VAL* 3.7 7.0 - - - +
1260G LEU* 1.3 76.8 - - + +
1262G ALA* 1.3 65.4 + - - +
1264G VAL* 3.9 4.6 - - - +
1265G THR* 2.8 37.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA1262 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G ILE* 5.2 8.7 - - + -
1160G THR* 5.0 4.4 - - + +
1163G PHE* 4.0 19.9 - - + -
1258G VAL 3.0 17.6 + - - +
1259G VAL 3.7 3.4 - - - +
1261G ILE* 1.3 75.9 - - - +
1263G ALA* 1.3 63.4 + - - +
1265G THR* 3.9 2.7 - - - -
1266G SER* 2.7 34.0 + - - +
1283G GLY 4.8 8.5 - - - +
1284G LEU* 5.1 2.2 - - - -
1287G ALA* 3.9 17.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA1263 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 5.2 6.5 - - + -
359G ALA* 4.0 24.7 - - + -
362G LEU* 6.5 1.6 - - + -
1259G VAL* 2.9 21.0 + - + +
1260G LEU* 3.7 5.8 - - + +
1262G ALA* 1.3 77.2 - - - +
1264G VAL* 1.3 62.6 + - + +
1266G SER* 3.8 2.3 - - - -
1267G ILE* 2.9 32.8 + - + +
1284G LEU* 4.6 20.3 - - + +
----------------------------------------------------------
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Residues in contact with VAL1264 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356G TYR* 4.6 23.6 - - + +
359G ALA* 5.5 5.6 - - + -
360G VAL* 6.1 0.9 - - + +
1260G LEU* 2.9 41.2 + - + +
1261G ILE* 3.9 3.8 - - - +
1263G ALA* 1.3 76.8 - - + +
1265G THR* 1.3 64.2 + - - +
1267G ILE* 3.8 4.6 - - - +
1268G SER* 3.0 27.6 + - - +
----------------------------------------------------------
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Residues in contact with THR1265 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160G THR* 3.2 26.9 - - + +
1162G VAL* 3.7 29.2 - - + +
1163G PHE* 4.8 4.6 - - - +
1261G ILE* 2.8 29.7 + - - +
1262G ALA* 3.9 3.8 - - - -
1264G VAL* 1.3 77.7 - - - +
1266G SER* 1.3 62.7 + - - +
1268G SER* 2.7 22.5 + - - +
1269G ASN* 2.9 13.1 + - + +
----------------------------------------------------------
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Residues in contact with SER1266 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159G VAL* 5.2 4.5 - - - +
1160G THR* 3.9 21.2 - - - +
1262G ALA* 2.7 23.7 + - - +
1263G ALA* 3.8 4.3 - - - -
1265G THR* 1.3 76.8 - - - +
1267G ILE* 1.3 58.0 + - - +
1269G ASN* 3.9 3.5 - - - +
1270G SER* 2.9 34.0 + - - -
1275G LEU* 4.5 2.4 - - - +
1280G VAL* 3.5 35.3 + - - +
1283G GLY* 5.4 1.6 - - - -
1284G LEU* 5.3 3.4 + - - -
----------------------------------------------------------
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Residues in contact with ILE1267 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 3.5 35.9 - - + +
327G LEU* 4.0 12.7 - - + +
355G ALA* 4.4 25.1 - - + +
356G TYR* 4.1 19.5 - - + +
359G ALA* 5.5 3.1 - - + -
1263G ALA* 2.9 27.1 + - + +
1264G VAL* 3.8 4.0 - - - +
1266G SER* 1.3 75.7 - - - +
1268G SER* 1.3 66.4 + - - +
1270G SER* 4.0 1.5 - - - -
1271G LEU* 3.0 47.7 + - + +
1280G VAL* 3.7 14.6 - - + -
1284G LEU* 5.2 0.2 - - + -
----------------------------------------------------------
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Residues in contact with SER1268 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356G TYR* 3.6 23.5 + - - -
1264G VAL* 3.0 16.3 + - - +
1265G THR* 2.7 26.2 + - - +
1267G ILE* 1.3 77.0 - - - +
1269G ASN* 1.3 64.9 + - - +
1272G HIS* 2.9 37.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN1269 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159G VAL 5.5 0.6 + - - -
1160G THR* 4.9 11.6 + - - +
1161G PRO* 5.2 8.7 - - - +
1162G VAL* 5.0 11.7 - - + +
1265G THR* 2.9 17.8 + - + +
1266G SER* 3.9 2.2 - - - +
1268G SER* 1.3 80.4 + - - +
1270G SER* 1.3 52.8 + - - +
1272G HIS* 4.8 1.3 - - - -
1273G ARG* 2.3 72.5 + - - +
1275G LEU* 3.4 19.3 - - + +
----------------------------------------------------------
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Residues in contact with SER1270 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327G LEU* 3.4 27.3 - - - +
1266G SER 2.9 23.0 + - - -
1269G ASN* 1.3 75.8 - - - +
1271G LEU* 1.3 63.5 + - - +
1272G HIS 3.1 0.2 + - - -
1273G ARG 3.1 7.2 - - - -
1274G GLU* 3.1 23.6 + - - +
1275G LEU* 3.4 15.7 + - - +
1277G ALA* 3.8 8.1 + - - +
1280G VAL* 3.4 21.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1271 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327G LEU* 4.4 22.4 - - + +
353G ALA* 5.4 4.9 - - + -
355G ALA* 5.7 2.7 - - + -
356G TYR* 4.0 14.8 - - + +
1267G ILE* 3.0 45.4 + - + +
1268G SER 3.9 0.4 - - - +
1270G SER* 1.3 80.7 - - - +
1272G HIS* 1.3 94.0 + - + +
----------------------------------------------------------
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Residues in contact with HIS1272 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356G TYR* 3.7 9.9 + - - -
1268G SER* 2.9 39.3 + - - +
1269G ASN* 3.8 1.6 - - - +
1271G LEU* 1.3 101.7 + - + +
1273G ARG* 1.3 60.9 + - + +
1274G GLU* 3.9 6.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG1273 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1269G ASN* 2.3 59.9 + - - +
1270G SER* 3.1 2.0 - - - +
1272G HIS* 1.3 69.8 - - + +
1274G GLU* 1.3 74.6 + - - +
1275G LEU* 3.4 5.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il