Contacts of the helix formed by residues 1218 - 1273 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1218 (chain H).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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768H PRO* 4.2 18.2 - - + +
789H PHE* 3.3 48.9 - + + -
790H GLU* 4.9 12.3 - - + -
845H GLN* 3.2 23.7 + - - -
1213H ILE* 3.8 9.2 + - + +
1216H PHE* 3.0 24.4 - - + -
1217H ARG* 1.3 82.0 - - + +
1219H GLU* 1.3 54.4 + - - +
1220H ALA* 3.2 3.4 - - - -
1221H ARG* 2.7 40.2 + - + +
1222H PHE* 3.5 8.1 + - + +
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Residues in contact with GLU1219 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400H MET* 3.1 48.8 - - + +
401H HIS* 4.9 9.8 + - - -
1213H ILE* 4.4 8.1 + - + +
1214H ARG* 5.9 3.2 - - - +
1217H ARG* 3.3 31.9 + - - +
1218H TYR* 1.3 76.7 - - - +
1220H ALA* 1.3 68.3 + - + +
1221H ARG 3.1 0.3 + - - -
1222H PHE* 3.2 4.3 + - - +
1223H GLN* 2.9 37.7 + - - +
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Residues in contact with ALA1220 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1217H ARG 5.1 0.2 + - - -
1218H TYR 3.1 1.2 + - - -
1219H GLU* 1.3 83.4 - - + +
1221H ARG* 1.3 57.7 + - - +
1223H GLN* 3.4 16.5 - - - +
1224H GLN* 2.9 41.6 + - + +
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Residues in contact with ARG1221 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790H GLU* 4.7 22.1 - - + +
1218H TYR* 2.7 30.7 + - + +
1220H ALA* 1.3 74.5 - - - +
1222H PHE* 1.3 70.1 + - + +
1224H GLN* 3.1 32.2 + - - +
1225H LYS* 2.9 62.7 + - + +
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Residues in contact with PHE1222 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 3.1 23.8 + - - +
400H MET* 4.9 3.1 - - + -
777H TRP* 5.8 2.2 - + - -
779H LEU* 4.3 21.8 - - + -
789H PHE* 3.7 29.6 - + - -
790H GLU* 6.0 4.0 - - + -
1202H HIS* 3.6 14.9 + + + -
1213H ILE* 3.4 49.6 - - + -
1218H TYR* 3.5 5.9 + - + +
1219H GLU 3.2 6.2 + - - +
1221H ARG* 1.3 82.4 - - + +
1223H GLN* 1.3 60.1 + - - +
1225H LYS* 3.4 32.6 - - + +
1226H LEU* 2.9 26.7 + - - +
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Residues in contact with GLN1223 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 3.6 25.3 + - + -
397H ASN* 4.7 13.1 + - - +
400H MET* 4.0 24.9 - - + +
401H HIS* 5.8 1.4 + - - -
1219H GLU* 2.9 35.6 + - - +
1220H ALA* 3.4 18.5 - - - +
1222H PHE* 1.3 77.3 - - - +
1224H GLN* 1.3 62.2 + - + +
1226H LEU* 3.3 1.7 + - - +
1227H LEU* 2.9 40.7 + - + +
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Residues in contact with GLN1224 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1220H ALA* 2.9 25.9 + - + +
1221H ARG* 3.1 25.8 + - - +
1223H GLN* 1.3 81.2 + - - +
1225H LYS* 1.3 64.7 + - - +
1227H LEU* 3.2 23.4 + - - +
1228H GLU* 2.9 23.2 + - - +
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Residues in contact with LYS1225 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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779H LEU* 6.5 0.4 - - - -
1202H HIS* 4.6 8.5 - - + -
1221H ARG* 2.9 42.0 + - + +
1222H PHE* 3.4 41.7 - - + +
1224H GLN* 1.3 75.3 - - - +
1226H LEU* 1.3 56.9 + - - +
1228H GLU* 3.2 9.4 + - - +
1229H TYR* 2.9 57.0 + - + -
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Residues in contact with LEU1226 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN 4.4 7.4 - - - +
393H THR* 5.3 2.5 - - - -
396H TYR* 3.3 40.6 - - + -
1199H LEU* 4.0 9.9 - - + -
1202H HIS* 3.9 18.6 + - + +
1203H PHE* 3.4 36.3 - - + -
1222H PHE 2.9 16.9 + - - +
1223H GLN 3.9 2.7 - - - +
1225H LYS* 1.3 74.0 - - - +
1227H LEU* 1.3 71.1 + - + +
1229H TYR* 3.1 18.9 + - + -
1230H THR* 2.8 30.6 + - - +
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Residues in contact with LEU1227 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258H ARG* 5.2 9.4 - - + +
259H ALA* 5.1 15.3 - - + -
393H THR* 4.4 30.1 - - + +
396H TYR* 5.8 2.7 - - + -
1223H GLN* 2.9 33.5 + - + +
1224H GLN* 3.2 30.7 + - - +
1226H LEU* 1.3 79.9 - - + +
1228H GLU* 1.3 56.3 + - - +
1230H THR* 3.7 5.5 - - - -
1231H ASP* 2.8 41.7 + - - +
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Residues in contact with GLU1228 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1224H GLN 2.9 12.6 + - - +
1225H LYS* 3.4 10.1 - - - +
1227H LEU* 1.3 76.6 - - - +
1229H TYR* 1.3 93.1 + - - +
1231H ASP* 3.3 10.3 + - + +
1232H SER* 2.7 47.8 + - - -
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Residues in contact with TYR1229 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1195H THR 4.8 2.5 - - - +
1198H PRO* 4.2 25.1 - - + -
1199H LEU* 3.6 20.0 - - + +
1202H HIS* 3.6 39.9 + + + -
1225H LYS* 2.9 43.6 + - + -
1226H LEU* 3.1 15.5 + - + +
1228H GLU* 1.3 96.0 + - - +
1230H THR* 1.3 58.3 + - - +
1232H SER* 3.1 9.2 + - - -
1233H ASN* 3.0 27.2 + - - +
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Residues in contact with THR1230 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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258H ARG* 5.1 3.6 - - + -
389H GLY* 3.6 22.9 - - - +
392H GLN* 3.3 30.9 + - - +
393H THR* 5.3 3.9 + - - +
1199H LEU* 4.1 7.0 - - - +
1226H LEU* 2.8 34.4 + - - +
1227H LEU* 3.7 6.5 - - - -
1229H TYR* 1.3 69.5 - - - +
1231H ASP* 1.3 63.8 + - - +
1233H ASN* 3.2 4.4 + - + +
1234H ASN* 2.9 48.9 + - - +
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Residues in contact with ASP1231 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253H LEU* 3.3 37.7 - - + +
257H MET* 3.7 2.1 - - - +
258H ARG* 3.1 30.1 - - - +
1227H LEU* 2.8 34.7 + - - +
1228H GLU* 3.5 9.2 - - + +
1230H THR* 1.3 75.9 - - - +
1232H SER* 1.3 57.5 + - - +
1234H ASN* 3.2 7.2 + - - +
1235H ILE* 2.9 36.0 + - - +
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Residues in contact with SER1232 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253H LEU* 5.8 0.4 - - - -
1195H THR* 3.4 22.0 - - - +
1228H GLU* 2.7 38.6 + - - -
1229H TYR* 3.1 12.3 + - - -
1231H ASP* 1.3 77.0 - - - +
1233H ASN* 1.3 64.1 + - - +
1235H ILE* 3.2 5.5 + - - +
1236H ALA* 3.0 19.4 + - - +
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Residues in contact with ASN1233 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388H ARG* 3.5 32.5 + - - +
392H GLN* 4.7 2.8 + - - +
1192H ASP* 3.5 20.9 - - - +
1195H THR* 3.4 13.1 - - - +
1196H GLN* 4.4 18.0 - - - +
1199H LEU* 3.2 35.4 - - + +
1229H TYR 3.0 8.4 + - - +
1230H THR* 3.2 7.2 + - + +
1232H SER* 1.3 76.0 - - - +
1234H ASN* 1.3 58.4 + - - +
1236H ALA* 3.3 2.4 + - - +
1237H SER* 2.9 23.7 + - - -
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Residues in contact with ASN1234 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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257H MET* 6.2 0.8 - - - +
258H ARG* 4.3 7.3 - - - +
385H ILE* 3.3 26.4 + - + +
388H ARG* 3.0 28.2 + - - +
389H GLY* 4.2 8.6 + - - -
1230H THR* 2.9 41.5 + - - +
1231H ASP* 3.5 14.3 + - - +
1233H ASN* 1.3 77.4 - - - +
1235H ILE* 1.3 62.1 + - + +
1237H SER* 3.2 3.5 + - - -
1238H LEU* 2.9 34.7 + - + +
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Residues in contact with ILE1235 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217H PHE* 5.1 6.3 - - + +
250H ILE* 5.5 0.2 - - + -
251H GLY 3.2 25.6 - - - +
252H LYS 3.6 17.3 - - - +
253H LEU* 3.7 31.6 - - + -
254H PRO* 4.2 9.6 - - + -
1231H ASP 2.9 17.5 + - - +
1232H SER* 3.2 5.4 + - - +
1234H ASN* 1.3 77.6 - - + +
1236H ALA* 1.3 62.9 + - - +
1238H LEU* 3.2 16.8 + - + +
1239H PHE* 2.9 43.0 + - + -
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Residues in contact with ALA1236 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188H LEU* 4.1 4.7 - - - +
1191H LEU* 3.7 25.1 - - + -
1192H ASP* 4.3 16.4 - - + +
1195H THR* 4.3 13.0 - - + -
1232H SER 3.0 13.6 + - - +
1233H ASN* 3.6 8.7 - - - +
1235H ILE* 1.3 77.4 - - - +
1237H SER* 1.3 62.4 + - - +
1239H PHE* 3.1 17.8 + - - +
1240H LEU* 3.0 20.1 + - - +
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Residues in contact with SER1237 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381H ILE* 5.6 1.2 - - - +
385H ILE* 3.1 21.5 - - - +
388H ARG* 3.4 33.0 + - - -
429H MET* 5.2 1.9 - - - -
433H PHE* 6.1 0.2 - - - -
1192H ASP* 4.8 8.5 + - - -
1233H ASN* 2.9 10.1 + - - -
1234H ASN 3.2 2.9 + - - -
1236H ALA* 1.3 77.4 - - - +
1238H LEU* 1.3 57.4 + - - +
1240H LEU* 3.1 13.5 + - - +
1241H THR* 2.9 35.8 + - - -
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Residues in contact with LEU1238 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217H PHE* 4.0 17.1 - - + +
218H LEU* 4.8 17.9 - - + -
254H PRO* 5.4 3.4 - - + -
378H TYR* 4.4 19.4 + - + +
381H ILE* 5.9 0.7 - - + -
382H GLU* 5.1 13.7 - - + -
385H ILE* 3.9 31.0 - - + -
1234H ASN* 2.9 22.7 + - + +
1235H ILE* 3.6 23.6 - - + +
1236H ALA 3.2 0.4 - - - -
1237H SER* 1.3 75.2 - - - +
1239H PHE* 1.3 65.6 + - - +
1241H THR* 3.8 8.8 - - - +
1242H ALA* 2.9 26.2 + - - +
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Residues in contact with PHE1239 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217H PHE* 3.3 54.2 - + - -
249H ALA 5.3 0.9 - - - -
250H ILE* 3.4 24.0 - - + -
251H GLY 3.3 24.5 - - - -
1188H LEU* 3.5 24.6 - - + +
1191H LEU* 4.5 12.8 - - + -
1235H ILE* 2.9 34.1 + - + -
1236H ALA* 3.2 15.0 - - - +
1238H LEU* 1.3 77.7 - - - +
1240H LEU* 1.3 64.9 + - - +
1242H ALA* 3.7 1.7 - - - +
1243H ALA* 3.0 24.4 + - - +
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Residues in contact with LEU1240 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181H PHE* 5.9 1.8 - - + -
1185H SER* 4.6 13.7 - - - +
1188H LEU* 3.4 28.6 - - + +
1189H GLN* 4.1 20.4 - - - +
1192H ASP* 4.1 13.9 - - - +
1236H ALA 3.0 10.6 + - - +
1237H SER* 3.1 16.1 + - - +
1239H PHE* 1.3 75.1 - - - +
1241H THR* 1.3 61.3 + - - +
1243H ALA* 3.3 3.8 + - + +
1244H ASN* 2.9 36.6 + - + +
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Residues in contact with THR1241 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378H TYR* 3.5 22.0 - - + -
381H ILE* 3.2 54.1 - - + +
385H ILE* 5.4 0.3 - - - +
1237H SER* 2.9 20.6 + - - -
1238H LEU* 3.8 9.4 - - - +
1240H LEU* 1.3 76.7 - - - +
1242H ALA* 1.3 68.0 + - - +
1244H ASN* 3.2 5.2 + - - -
1245H ARG* 2.8 38.5 + - + +
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Residues in contact with ALA1242 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217H PHE* 4.1 10.8 - - + -
230H TYR* 4.3 12.3 - - + -
232H TRP* 3.7 30.5 - - + -
233H MET* 4.1 12.9 - - + +
378H TYR* 5.0 3.7 - - + -
1238H LEU 2.9 17.6 + - - +
1239H PHE 3.7 3.8 - - - +
1241H THR* 1.3 76.4 - - - +
1243H ALA* 1.3 63.4 + - - +
1245H ARG* 3.8 1.4 - - - +
1246H TRP* 2.9 24.6 + - - +
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Residues in contact with ALA1243 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233H MET* 5.0 2.4 - - - +
237H ILE* 5.9 8.1 - - + -
1181H PHE* 2.9 32.2 - - + -
1184H ALA* 5.8 5.6 - - + -
1185H SER* 5.9 2.5 - - - -
1188H LEU* 5.4 7.9 - - + -
1239H PHE 3.0 16.9 + - - +
1240H LEU* 3.7 6.1 - - + +
1242H ALA* 1.3 77.2 - - - +
1244H ASN* 1.3 63.6 + - - +
1246H TRP* 3.2 9.1 + - - +
1247H LEU 3.0 15.2 + - - -
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Residues in contact with ASN1244 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377H TYR* 5.0 4.2 + - - -
1181H PHE* 3.7 16.6 - - + -
1240H LEU* 2.9 26.4 + - + +
1241H THR* 3.2 3.3 + - - +
1243H ALA* 1.3 76.8 - - - +
1245H ARG* 1.3 88.9 + - - +
1247H LEU* 3.4 3.8 + - - +
1248H GLU* 2.8 27.2 + - - +
1299H ARG* 4.7 20.3 - - - +
1303H ASP* 5.7 2.2 + - - -
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Residues in contact with ARG1245 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230H TYR* 3.6 36.1 - - + +
374H GLN* 3.3 18.9 + - - +
377H TYR* 3.2 44.6 - - - -
378H TYR* 4.3 8.1 - - + +
381H ILE* 5.1 1.2 - - - +
1241H THR* 2.8 36.1 + - + +
1242H ALA 3.9 1.6 - - - +
1244H ASN* 1.3 121.1 + - - +
1246H TRP* 1.3 61.5 + - - +
1248H GLU* 3.2 26.8 + - - +
1249H VAL* 2.9 34.1 + - - +
1299H ARG* 4.8 6.9 - - - +
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Residues in contact with TRP1246 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229H THR 4.1 0.2 - - - -
230H TYR* 3.1 37.4 - - + -
233H MET* 4.4 4.7 - - + -
234H ASN* 3.2 29.1 - - + +
237H ILE* 4.4 14.8 - - + -
1177H ILE* 5.8 5.4 - - + -
1180H TYR* 4.1 33.0 - + - -
1181H PHE* 4.6 14.1 - + + -
1242H ALA 2.9 18.0 + - - +
1243H ALA* 3.2 8.7 + - - +
1245H ARG* 1.3 76.4 - - - +
1247H LEU* 1.3 76.2 + - + +
1249H VAL* 3.2 5.3 + - - +
1250H ARG* 2.8 79.2 + - + +
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Residues in contact with LEU1247 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177H ILE* 3.7 31.4 - - + +
1178H GLN* 4.7 7.9 - - + -
1181H PHE* 3.4 58.1 - - + -
1182H ARG* 6.2 0.4 - - + -
1243H ALA 3.0 6.1 + - - -
1244H ASN* 3.8 7.9 - - - +
1246H TRP* 1.3 84.2 - - + +
1248H GLU* 1.3 63.7 + - - +
1250H ARG* 3.2 5.9 + - + +
1251H MET* 2.9 31.3 + - + +
1295H ASN* 6.2 0.2 - - - +
1298H VAL* 3.9 25.8 - - + -
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Residues in contact with GLU1248 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374H GLN* 3.0 32.8 - - - +
1244H ASN* 2.8 17.8 + - - +
1245H ARG* 3.2 29.7 + - - +
1247H LEU* 1.3 76.1 - - - +
1249H VAL* 1.3 61.2 + - - +
1251H MET 3.4 0.2 + - - -
1252H GLU* 2.9 18.2 + - + +
1295H ASN* 2.6 61.0 + - - +
1296H TRP* 5.3 1.7 + - - -
1299H ARG* 3.9 19.2 + - - +
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Residues in contact with VAL1249 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY 4.4 7.4 - - - +
229H THR* 3.8 9.9 - - - +
230H TYR* 4.1 17.0 - - + -
371H THR* 6.0 1.1 - - - +
374H GLN* 3.7 27.1 - - + +
1245H ARG 2.9 20.7 + - - +
1246H TRP* 3.2 6.5 + - - +
1248H GLU* 1.3 75.0 - - - +
1250H ARG* 1.3 81.3 + - - +
1252H GLU* 3.2 7.2 + - - +
1253H TYR* 3.0 54.9 + - + +
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Residues in contact with ARG1250 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229H THR* 3.8 17.8 + - - +
230H TYR 4.6 0.2 + - - -
231H TRP* 3.6 32.1 - - - -
234H ASN* 4.2 0.8 - - - +
1177H ILE* 4.9 9.0 - - + -
1246H TRP* 2.8 67.6 + - + +
1247H LEU* 3.2 12.3 + - + +
1249H VAL* 1.3 100.1 - - - +
1251H MET* 1.3 62.7 + - - +
1253H TYR* 3.1 14.5 + - - +
1254H ILE* 3.0 28.5 + - + +
----------------------------------------------------------
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Residues in contact with MET1251 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174H CYS* 3.4 30.1 - - - +
1177H ILE* 3.4 30.3 - - - -
1178H GLN* 4.8 3.4 - - - +
1247H LEU* 2.9 37.4 + - + +
1248H GLU 3.9 2.5 - - - +
1250H ARG* 1.3 74.4 - - - +
1252H GLU* 1.3 62.5 + - - +
1254H ILE* 3.2 17.9 + - + +
1255H GLY* 3.0 18.4 + - - -
1294H LEU* 3.6 33.1 - - + +
1295H ASN* 4.3 15.3 - - - +
1298H VAL* 3.7 20.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU1252 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366H LEU* 5.4 0.8 - - - +
370H ARG* 2.9 58.9 + - + +
374H GLN* 6.4 1.6 - - + -
1248H GLU* 2.9 19.9 + - + +
1249H VAL* 3.4 8.3 - - - +
1251H MET* 1.3 78.6 - - - +
1253H TYR* 1.3 66.0 + - + +
1255H GLY* 3.0 2.7 + - - -
1256H ALA* 2.9 28.1 + - + +
1291H SER* 3.1 31.5 + - - +
1292H ASN 5.2 0.3 - - - +
1295H ASN* 3.9 17.5 + - - +
----------------------------------------------------------
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Residues in contact with TYR1253 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229H THR* 4.3 11.6 + - - -
367H LEU* 3.9 38.4 + - + -
370H ARG* 5.5 0.2 - - + -
371H THR* 3.7 28.1 + - - -
1249H VAL* 3.0 43.0 + - + +
1250H ARG* 3.1 17.7 + - - +
1252H GLU* 1.3 83.1 - - + +
1254H ILE* 1.3 66.2 + - - +
1256H ALA* 3.3 4.6 + - + +
1257H CYS* 3.0 32.1 + - - -
----------------------------------------------------------
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Residues in contact with ILE1254 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170H LEU* 3.8 31.2 - - + +
1173H VAL* 4.8 9.0 - - + -
1174H CYS* 4.4 20.4 - - + +
1177H ILE* 4.4 8.5 - - + -
1250H ARG* 3.0 14.5 + - + +
1251H MET* 3.3 39.5 - - + +
1252H GLU 3.2 0.2 - - - -
1253H TYR* 1.3 75.7 - - - +
1255H GLY* 1.3 63.1 + - - +
1257H CYS* 3.2 9.6 + - - +
1258H VAL* 2.9 28.4 + - + +
1294H LEU* 5.6 6.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY1255 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1251H MET 3.0 13.5 + - - -
1252H GLU* 3.0 5.1 + - - -
1254H ILE* 1.3 76.5 - - - +
1256H ALA* 1.3 57.3 + - - +
1258H VAL* 3.1 11.6 + - - +
1259H VAL* 2.9 31.2 + - - +
1290H VAL* 5.5 4.0 - - - -
1291H SER* 3.8 23.1 - - - -
1294H LEU* 5.5 6.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA1256 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 3.1 28.2 - - + -
366H LEU* 5.1 13.2 - - + -
367H LEU* 4.1 20.4 - - + +
1252H GLU* 2.9 15.2 + - + +
1253H TYR* 3.7 8.5 - - + +
1254H ILE 3.2 0.2 - - - -
1255H GLY* 1.3 72.5 - - - +
1257H CYS* 1.3 66.5 + - - +
1259H VAL* 3.2 6.7 + - - +
1260H LEU 3.0 18.9 + - - -
1291H SER* 4.0 8.1 + - - +
----------------------------------------------------------
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Residues in contact with CYS1257 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 3.9 17.3 - - - -
1170H LEU* 4.8 12.3 - - + -
1253H TYR* 3.0 22.5 + - - -
1254H ILE* 3.5 9.9 - - - +
1256H ALA* 1.3 76.4 - - - +
1258H VAL* 1.3 63.4 + - - +
1260H LEU* 3.3 3.7 + - - +
1261H ILE* 2.9 36.6 + - + +
----------------------------------------------------------
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Residues in contact with VAL1258 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153H LEU* 5.9 2.0 - - + -
1156H ILE* 4.4 13.9 - - + -
1163H PHE* 3.8 24.4 - - + -
1167H LEU* 5.4 7.0 - - + -
1170H LEU* 4.7 16.4 - - + -
1254H ILE* 2.9 29.0 + - + +
1255H GLY* 3.1 12.8 + - - +
1257H CYS* 1.3 76.9 - - - +
1259H VAL* 1.3 64.4 + - - +
1261H ILE* 3.3 7.7 + - + +
1262H ALA* 3.0 22.3 + - - +
1287H ALA* 4.9 6.3 - - + +
1290H VAL* 4.8 18.4 - - + -
----------------------------------------------------------
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Residues in contact with VAL1259 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362H LEU* 4.8 7.4 - - + -
363H PHE* 5.6 4.5 - - + -
366H LEU* 4.4 14.4 - - + -
1255H GLY 2.9 14.3 + - - +
1256H ALA* 3.2 8.9 + - - +
1258H VAL* 1.3 76.8 - - + +
1260H LEU* 1.3 65.4 + - - +
1262H ALA* 3.7 1.9 - - - +
1263H ALA* 2.9 26.2 + - + +
1284H LEU* 4.8 1.3 - - + +
1287H ALA* 3.1 40.2 - - + +
1288H LEU* 3.9 25.1 - - + +
1291H SER* 3.4 14.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU1260 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359H ALA* 4.5 5.2 - - + +
360H VAL* 4.0 28.0 - - + +
363H PHE* 3.4 56.9 - - + -
1256H ALA 3.0 8.5 + - - +
1257H CYS* 3.7 4.5 - - - +
1258H VAL 3.2 0.2 - - - -
1259H VAL* 1.3 79.1 - - - +
1261H ILE* 1.3 65.4 + - + +
1263H ALA* 3.3 3.5 + - + +
1264H VAL* 2.9 46.4 + - + +
----------------------------------------------------------
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Residues in contact with ILE1261 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163H PHE* 3.5 24.5 - - + -
1166H ALA* 3.6 26.7 - - + -
1170H LEU* 4.7 18.4 - - + -
1257H CYS* 2.9 29.8 + - + +
1258H VAL* 3.7 7.2 - - - +
1260H LEU* 1.3 78.2 - - + +
1262H ALA* 1.3 65.0 + - - +
1264H VAL* 3.4 3.7 + - - +
1265H THR* 2.8 37.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA1262 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H ILE* 5.2 8.5 - - + -
1160H THR* 5.3 4.3 - - + -
1163H PHE* 4.0 20.6 - - + -
1258H VAL 3.0 16.5 + - - +
1259H VAL 3.7 4.3 - - - +
1261H ILE* 1.3 76.3 - - - +
1263H ALA* 1.3 61.9 + - - +
1265H THR* 3.4 2.9 + - - -
1266H SER* 2.7 33.4 + - - +
1283H GLY 4.8 8.3 - - - +
1284H LEU* 5.1 3.1 - - - -
1287H ALA* 3.9 18.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA1263 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 5.2 6.1 - - + -
359H ALA* 4.0 25.1 - - + +
362H LEU* 6.5 1.6 - - + -
1259H VAL* 2.9 20.8 + - + +
1260H LEU* 3.3 6.0 + - - +
1262H ALA* 1.3 77.0 - - - +
1264H VAL* 1.3 62.9 + - + +
1266H SER* 3.8 2.0 - - - -
1267H ILE* 2.9 32.6 + - + +
1284H LEU* 4.6 20.8 - - + +
----------------------------------------------------------
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Residues in contact with VAL1264 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 4.6 22.7 - - + +
359H ALA* 5.5 5.8 - - + -
360H VAL* 6.1 1.1 - - + -
1260H LEU* 2.9 41.0 + - + +
1261H ILE* 3.9 3.8 - - - +
1263H ALA* 1.3 76.9 - - + +
1265H THR* 1.3 66.1 + - - +
1267H ILE* 3.3 3.9 + - - +
1268H SER* 3.0 27.2 + - - +
----------------------------------------------------------
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Residues in contact with THR1265 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160H THR* 3.2 26.5 - - + +
1162H VAL* 3.7 29.5 - - + +
1163H PHE* 4.8 4.2 - - - +
1261H ILE* 2.8 29.1 + - - +
1262H ALA* 3.9 4.5 - - - -
1264H VAL* 1.3 78.1 - - - +
1266H SER* 1.3 62.9 + - - +
1268H SER* 2.7 22.7 + - - +
1269H ASN* 2.9 13.7 + - + +
----------------------------------------------------------
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Residues in contact with SER1266 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159H VAL* 5.2 4.3 - - - +
1160H THR* 3.9 20.4 - - - +
1262H ALA* 2.7 24.1 + - - +
1263H ALA* 3.8 3.1 - - - -
1265H THR* 1.3 78.7 - - - +
1267H ILE* 1.3 56.7 + - - +
1269H ASN* 3.9 3.9 - - - +
1270H SER* 2.9 34.1 + - - -
1275H LEU* 4.5 2.6 - - - +
1280H VAL* 3.5 37.4 + - - +
1283H GLY* 5.4 1.0 - - - -
1284H LEU* 5.3 3.6 + - - -
----------------------------------------------------------
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Residues in contact with ILE1267 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 3.5 35.4 - - + +
327H LEU* 4.0 12.5 - - + +
355H ALA* 4.4 25.6 - - + +
356H TYR* 4.1 20.2 - - + +
359H ALA* 5.5 3.1 - - + -
1263H ALA* 2.9 26.4 + - + +
1264H VAL* 3.8 4.3 - - - +
1266H SER* 1.3 75.2 - - - +
1268H SER* 1.3 67.4 + - - +
1270H SER* 4.0 1.1 - - - -
1271H LEU* 3.0 48.0 + - + +
1280H VAL* 3.7 14.8 - - + -
1284H LEU* 5.2 0.2 - - + -
----------------------------------------------------------
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Residues in contact with SER1268 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 3.6 23.7 + - - -
1264H VAL* 3.0 16.4 + - - +
1265H THR* 2.7 26.5 + - - +
1267H ILE* 1.3 76.0 - - - +
1269H ASN* 1.3 65.4 + - - +
1272H HIS* 2.9 38.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN1269 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1159H VAL 5.5 0.4 + - - -
1160H THR* 4.9 11.3 + - - +
1161H PRO* 5.2 9.1 - - - +
1162H VAL* 5.0 12.1 - - + +
1265H THR* 2.9 18.4 + - + +
1266H SER* 3.9 2.0 - - - +
1268H SER* 1.3 79.7 + - - +
1270H SER* 1.3 53.5 + - - +
1272H HIS* 4.8 1.6 - - - -
1273H ARG* 2.3 72.1 + - - +
1275H LEU* 3.4 20.3 - - + +
----------------------------------------------------------
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Residues in contact with SER1270 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327H LEU* 3.4 27.2 - - - +
1266H SER 2.9 23.0 + - - -
1269H ASN* 1.3 75.5 - - - +
1271H LEU* 1.3 64.4 + - - +
1272H HIS 3.1 0.2 + - - -
1273H ARG 3.1 7.5 - - - -
1274H GLU* 3.1 23.0 + - - +
1275H LEU* 3.4 16.5 + - - +
1277H ALA* 3.8 7.1 + - - +
1280H VAL* 3.4 21.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1271 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327H LEU* 4.4 22.9 - - + +
353H ALA* 5.4 5.6 - - + -
355H ALA* 5.7 3.6 - - + -
356H TYR* 4.0 15.0 - - + +
1267H ILE* 3.0 44.5 + - + +
1268H SER 3.9 0.9 - - - +
1270H SER* 1.3 80.9 - - - +
1272H HIS* 1.3 94.0 + - + +
----------------------------------------------------------
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Residues in contact with HIS1272 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 3.7 9.5 + - - -
1268H SER* 2.9 39.5 + - - +
1269H ASN* 3.8 1.1 - - - +
1270H SER 3.8 0.2 - - - -
1271H LEU* 1.3 103.4 + - + +
1273H ARG* 1.3 60.5 + - + +
1274H GLU* 3.9 5.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG1273 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1269H ASN* 2.3 60.5 + - - +
1270H SER* 3.1 1.5 - - - +
1272H HIS* 1.3 68.2 - - + +
1274H GLU* 1.3 75.0 + - - +
1275H LEU* 3.4 5.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il