Contacts of the helix formed by residues 1277 - 1319 (chain E) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1277 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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324E VAL* 4.7 16.1 - - + +
327E LEU* 3.5 41.1 - - + -
328E GLY* 6.4 0.2 - - - -
1270E SER* 3.8 6.5 + - - +
1275E LEU 3.7 0.4 - - - -
1276E SER* 1.3 71.0 - - - +
1278E GLY* 1.3 58.7 + - - +
1279E LEU 3.0 0.9 - - - -
1280E VAL* 2.7 30.2 + - + +
1281E GLY* 2.9 11.8 + - - -
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Residues in contact with GLY1278 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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324E VAL* 5.2 7.6 - - - +
573E PRO 5.5 4.7 - - - -
577E PHE* 5.1 6.9 - - - -
1034E ALA* 4.7 7.4 - - - +
1037E THR* 4.3 20.2 - - - -
1276E SER* 2.6 8.4 + - - -
1277E ALA* 1.3 73.0 - - - +
1279E LEU* 1.3 57.6 + - - -
1281E GLY* 3.4 2.8 + - - -
1282E LEU* 2.9 28.3 + - - +
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Residues in contact with LEU1279 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1031E TYR* 3.6 36.1 - - + +
1034E ALA* 4.2 20.9 - - + +
1035E LYS* 6.2 1.8 - - + -
1159E VAL* 4.1 24.5 - - + +
1275E LEU* 3.9 20.2 - - + +
1276E SER* 2.5 37.1 + - - +
1278E GLY* 1.3 72.6 - - - -
1280E VAL* 1.3 55.6 + - - +
1282E LEU* 3.2 8.3 + - - +
1283E GLY* 2.9 26.3 + - - -
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Residues in contact with VAL1280 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323E ILE* 4.6 2.9 - - + -
324E VAL* 6.3 0.2 - - + -
327E LEU* 4.6 1.8 - - + -
1159E VAL* 6.1 0.2 - - - -
1266E SER* 3.5 32.2 - - - +
1267E ILE* 3.7 25.8 - - + -
1270E SER* 3.4 24.2 - - - +
1275E LEU* 3.4 26.9 - - + -
1277E ALA* 2.7 22.1 + - + +
1279E LEU* 1.3 68.3 - - - +
1281E GLY* 1.3 66.4 + - - +
1282E LEU 3.2 0.2 + - - -
1283E GLY* 3.2 1.7 + - - -
1284E LEU* 3.0 33.5 + - + +
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Residues in contact with GLY1281 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 4.7 0.4 - - - -
324E VAL* 4.3 17.6 - - - +
577E PHE* 2.9 20.0 - - - -
1277E ALA 2.9 11.6 + - - -
1278E GLY* 3.8 2.9 - - - -
1280E VAL* 1.3 76.9 - - - +
1282E LEU* 1.3 56.6 + - - +
1284E LEU* 3.1 16.9 - - - +
1285E THR* 2.9 26.2 + - - -
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Residues in contact with LEU1282 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577E PHE* 3.3 20.1 - - + -
1030E ASP 3.8 6.5 - - - +
1031E TYR* 3.4 54.1 - - + +
1034E ALA* 3.6 15.7 - - + -
1155E VAL* 3.8 2.9 - - + -
1159E VAL* 3.6 17.0 - - + -
1278E GLY 2.9 13.8 + - - +
1279E LEU 3.4 7.2 - - - +
1281E GLY* 1.3 75.5 - - - +
1283E GLY* 1.3 65.5 + - - +
1285E THR* 3.4 0.9 + - - -
1286E TYR* 3.0 57.4 + - + +
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Residues in contact with GLY1283 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1156E ILE* 3.3 17.8 - - - +
1159E VAL* 3.8 26.2 - - - -
1262E ALA* 4.8 4.3 - - - +
1266E SER* 5.4 3.1 - - - -
1279E LEU 2.9 15.5 + - - -
1280E VAL* 3.8 2.2 - - - -
1282E LEU* 1.3 76.1 - - - +
1284E LEU* 1.3 56.9 + - - +
1286E TYR* 3.1 1.9 + - - -
1287E ALA* 2.9 25.2 + - - +
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Residues in contact with LEU1284 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 3.5 39.9 - - + -
323E ILE* 3.5 39.5 - - + -
362E LEU* 5.8 0.9 - - + -
1259E VAL* 5.8 0.9 - - + +
1262E ALA* 5.1 3.6 - - - -
1263E ALA* 4.6 23.3 - - + -
1266E SER* 5.3 1.7 + - - +
1267E ILE* 5.2 0.9 - - + -
1280E VAL* 3.0 26.1 + - + +
1281E GLY* 3.1 21.1 - - - +
1283E GLY* 1.3 77.2 - - - +
1285E THR* 1.3 71.3 + - - +
1287E ALA* 3.1 9.3 + - - +
1288E LEU* 2.9 36.4 + - + +
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Residues in contact with THR1285 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 3.3 15.4 - - + +
577E PHE* 3.0 28.8 - - + -
581E SER* 2.7 42.8 + - - +
584E HIS* 4.2 15.9 - - + -
585E ILE* 6.5 0.2 - - + -
1281E GLY 2.9 8.0 + - - -
1284E LEU* 1.3 78.8 - - - +
1286E TYR* 1.3 60.6 + - + +
1288E LEU* 3.3 10.3 + - + +
1289E MET* 2.8 25.3 + - + +
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Residues in contact with TYR1286 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577E PHE* 4.7 10.5 - + - -
584E HIS* 4.4 16.2 - + - -
1027E VAL* 4.8 8.5 - - + -
1030E ASP* 2.5 43.5 + - - +
1031E TYR* 4.2 1.4 + - + -
1152E ALA* 3.9 13.9 - - + +
1155E VAL* 3.4 41.5 - - + -
1156E ILE* 3.5 18.8 - - + -
1282E LEU* 3.0 38.1 + - + +
1283E GLY 3.1 1.5 + - - +
1285E THR* 1.3 81.0 - - + +
1287E ALA* 1.3 61.4 + - - +
1289E MET* 3.1 14.7 - - + +
1290E VAL* 2.9 31.9 + - - +
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Residues in contact with ALA1287 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1156E ILE* 4.0 5.3 - - + +
1258E VAL* 4.5 6.6 - - + +
1259E VAL* 3.1 40.6 - - + +
1262E ALA* 3.9 17.3 - - + -
1283E GLY 2.9 12.7 + - - +
1284E LEU* 3.1 11.0 + - - +
1286E TYR* 1.3 74.0 - - - +
1288E LEU* 1.3 61.6 + - - +
1290E VAL* 3.2 7.2 + - - +
1291E SER 2.9 24.9 + - - -
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Residues in contact with LEU1288 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316E GLY* 4.7 8.5 - - - -
320E ILE* 3.8 26.9 - - + -
362E LEU* 3.8 29.6 - - + -
366E LEU* 4.6 13.5 - - + -
370E ARG* 5.0 1.7 + - - -
585E ILE* 4.1 24.7 - - + -
1259E VAL* 3.9 16.8 - - + -
1284E LEU* 2.9 34.5 + - + +
1285E THR* 3.4 12.1 - - + +
1287E ALA* 1.3 74.8 - - - +
1289E MET* 1.3 62.9 + - - +
1291E SER* 3.3 3.9 + - - -
1292E ASN* 2.9 24.4 + - - +
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Residues in contact with MET1289 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E HIS* 3.9 37.0 - - + +
1148E LEU* 3.6 41.7 - - + +
1152E ALA* 4.5 12.8 - - + -
1285E THR 2.8 17.7 + - - +
1286E TYR* 3.1 21.3 - - + +
1287E ALA 3.2 0.2 - - - -
1288E LEU* 1.3 73.1 - - - +
1290E VAL* 1.3 58.4 + - - +
1292E ASN* 3.1 2.7 + - - -
1293E TYR* 2.9 72.8 + - + +
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Residues in contact with VAL1290 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149E CYS* 4.4 7.6 - - - +
1152E ALA* 3.6 23.6 - - + -
1153E LEU* 3.7 29.6 - - + +
1156E ILE* 4.9 5.8 - - + -
1255E GLY* 5.5 2.5 - - - -
1258E VAL* 4.8 18.6 - - + -
1286E TYR 2.9 21.1 + - - +
1287E ALA* 3.2 6.5 + - - +
1289E MET* 1.3 70.6 - - - +
1291E SER* 1.3 68.1 + - - +
1292E ASN 2.9 0.2 + - - -
1293E TYR* 4.4 2.0 - - - +
1294E LEU* 2.8 50.7 + - + +
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Residues in contact with SER1291 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366E LEU* 4.6 7.5 - - - +
370E ARG* 4.1 10.3 + - - -
1252E GLU* 3.1 36.4 + - - +
1255E GLY* 3.8 24.0 + - - -
1256E ALA* 4.0 3.6 + - - +
1259E VAL* 3.4 28.9 - - - +
1287E ALA 2.9 7.7 + - - -
1288E LEU* 3.7 5.4 - - - -
1290E VAL* 1.3 77.1 - - - +
1292E ASN* 1.3 62.5 + - - +
1294E LEU* 4.8 1.4 + - - +
1295E ASN 5.0 2.6 + - - -
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Residues in contact with ASN1292 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370E ARG* 3.9 19.1 - - - +
585E ILE* 5.3 5.7 - - - +
588E THR* 3.5 24.0 - - - -
1252E GLU* 5.3 0.5 - - - +
1288E LEU 2.9 12.8 + - - +
1289E MET* 3.3 8.7 - - - +
1290E VAL 3.0 0.2 - - - -
1291E SER* 1.3 80.6 - - - +
1293E TYR* 1.3 82.0 + - + +
1294E LEU 3.5 0.6 + - - -
1295E ASN* 4.0 8.0 + - - +
1296E TRP* 4.2 33.9 + - - +
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Residues in contact with TYR1293 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E HIS* 3.7 8.9 + - + -
587E VAL* 4.4 1.9 + - - +
588E THR* 3.3 28.9 + - - -
591E PHE* 5.7 3.6 - - + -
1144E ARG* 6.3 4.7 - - + -
1145E SER* 4.1 24.7 - - - +
1148E LEU* 5.2 7.6 - - + -
1149E CYS* 5.5 4.3 - - + +
1289E MET* 2.9 69.3 + - + +
1290E VAL* 5.2 0.7 - - - -
1292E ASN* 1.3 92.4 - - + +
1294E LEU* 1.3 58.9 + - - +
1295E ASN 3.3 2.7 - - - -
1296E TRP* 3.3 41.8 + + - +
1297E MET* 2.9 27.3 + - - +
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Residues in contact with LEU1294 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149E CYS* 3.6 19.2 - - - +
1153E LEU* 5.6 0.7 - - + -
1174E CYS* 5.5 4.3 - - - -
1251E MET* 3.6 46.7 - - + +
1254E ILE* 5.6 4.9 - - + -
1255E GLY* 5.5 6.1 - - - +
1290E VAL* 2.8 32.0 + - + +
1291E SER* 5.2 2.2 - - - +
1293E TYR* 1.3 78.2 - - - +
1295E ASN* 1.3 59.5 + - - +
1297E MET* 3.1 35.5 + - + +
1298E VAL* 3.0 31.2 + - + +
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Residues in contact with ASN1295 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1247E LEU* 5.4 0.4 - - - +
1248E GLU* 2.6 70.2 + - - +
1251E MET* 4.3 12.2 - - + +
1252E GLU* 3.9 21.7 + - - +
1290E VAL 4.7 0.2 + - - -
1291E SER 5.0 1.5 + - - +
1292E ASN 4.0 8.1 + - - +
1293E TYR 3.3 0.4 - - - -
1294E LEU* 1.3 80.0 - - + +
1296E TRP* 1.3 69.3 + - + +
1298E VAL* 3.3 9.2 + - - +
1299E ARG* 2.9 21.3 + - - +
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Residues in contact with TRP1296 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588E THR* 3.5 31.4 - - - -
589E PRO* 5.4 0.4 - - + -
591E PHE* 4.6 11.9 - - + -
592E LEU* 4.8 22.4 - - + -
1144E ARG* 6.4 2.7 - - - -
1145E SER* 3.9 13.5 - - - +
1248E GLU* 5.3 1.5 + - - -
1292E ASN* 4.2 24.2 + - - +
1293E TYR* 3.3 43.8 + + - +
1295E ASN* 1.3 80.2 - - + +
1297E MET* 1.3 62.5 + - - +
1299E ARG* 3.2 34.9 - - - +
1300E ASN* 2.8 38.1 + - - +
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Residues in contact with MET1297 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1142E LEU* 5.0 4.6 - - + +
1145E SER* 3.7 15.8 - - - +
1146E THR* 3.4 43.5 - - - +
1149E CYS* 3.8 16.4 - - - -
1150E VAL* 5.6 1.8 - - - -
1174E CYS* 6.2 2.9 - - - -
1178E GLN* 6.0 0.7 - - - +
1293E TYR 2.9 14.0 + - - +
1294E LEU* 3.1 37.2 + - + +
1296E TRP* 1.3 76.9 - - - +
1298E VAL* 1.3 67.4 + - + +
1300E ASN* 3.5 2.3 + - - +
1301E LEU* 2.9 29.9 + - + +
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Residues in contact with VAL1298 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174E CYS* 5.5 0.4 - - - -
1178E GLN* 4.3 16.8 - - + +
1247E LEU* 3.9 27.6 - - + -
1251E MET* 3.7 32.8 - - + -
1294E LEU* 3.0 13.6 + - + +
1295E ASN* 3.7 12.8 - - - +
1296E TRP 3.2 0.2 - - - -
1297E MET* 1.3 88.4 - - + +
1299E ARG* 1.3 64.1 + - - +
1301E LEU* 3.1 10.7 + - + +
1302E ALA* 2.9 22.7 + - + +
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Residues in contact with ARG1299 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377E TYR* 5.6 7.4 - - - -
592E LEU* 5.7 8.1 - - - +
1244E ASN* 4.7 22.2 - - - +
1245E ARG* 4.8 4.0 - - - +
1248E GLU* 3.9 27.7 + - - +
1295E ASN* 2.9 12.1 + - - +
1296E TRP* 3.2 48.8 - - - +
1298E VAL* 1.3 79.0 - - - +
1300E ASN* 1.3 66.6 + - - +
1302E ALA* 3.2 8.7 + - + +
1303E ASP* 2.9 49.7 + - - +
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Residues in contact with ASN1300 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1138E THR* 4.0 7.4 - - + +
1141E CYS* 3.5 28.8 - - + +
1142E LEU* 3.5 23.1 - - + +
1145E SER* 3.4 20.8 + - - -
1296E TRP* 2.8 30.4 + - - +
1297E MET 3.9 1.3 - - - +
1299E ARG* 1.3 84.1 + - - +
1301E LEU* 1.3 61.3 + - - +
1303E ASP* 4.4 10.0 - - - +
1304E MET* 2.9 33.3 + - - +
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Residues in contact with LEU1301 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1142E LEU* 3.5 21.5 - - + +
1182E ARG* 4.4 25.6 - - - +
1297E MET* 2.9 17.7 + - + +
1298E VAL* 3.3 13.7 - - + +
1300E ASN* 1.3 75.9 - - - +
1302E ALA* 1.3 61.1 + - + +
1304E MET* 3.8 1.0 - - + -
1305E GLU* 2.9 42.9 + - + +
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Residues in contact with ALA1302 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181E PHE* 5.7 9.6 - - + -
1182E ARG* 6.3 2.0 - - + +
1185E SER* 6.2 0.4 - - - +
1298E VAL* 2.9 14.6 + - + +
1299E ARG* 3.2 11.9 + - + +
1301E LEU* 1.3 81.5 - - + +
1303E ASP* 1.3 67.3 + - - +
1305E GLU* 3.1 9.6 + - - +
1306E LEU* 3.0 21.0 + - - +
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Residues in contact with ASP1303 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1138E THR* 4.2 13.9 - - + +
1244E ASN* 5.7 2.3 + - - -
1299E ARG* 2.9 39.2 + - - +
1300E ASN* 4.1 8.8 - - - +
1301E LEU 3.4 0.2 - - - -
1302E ALA* 1.3 78.4 - - - +
1304E MET* 1.3 59.0 + - - +
1306E LEU* 3.2 12.6 + - - +
1307E GLN* 3.0 32.5 + - - +
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Residues in contact with MET1304 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1000E CYS* 3.9 24.2 - - + -
1003E TYR* 6.1 2.7 - - + -
1135E ILE* 5.9 3.1 - - + -
1138E THR* 3.5 17.1 - - + +
1139E LEU* 3.6 43.7 - - + +
1142E LEU* 3.5 26.9 - - + -
1300E ASN 2.9 18.6 + - - +
1301E LEU* 4.1 1.1 - - + +
1303E ASP* 1.3 73.1 - - - +
1305E GLU* 1.3 61.6 + - - +
1307E GLN* 4.2 6.5 - - - +
1308E LEU* 2.8 53.6 + - + +
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Residues in contact with GLU1305 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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995E ILE* 5.9 0.5 - - - +
996E PRO* 3.3 38.6 - - - +
1182E ARG* 4.1 24.0 + - - +
1186E ARG* 5.0 5.6 + - - +
1301E LEU* 2.9 27.4 + - + +
1302E ALA* 3.2 13.7 - - - +
1304E MET* 1.3 77.1 - - - +
1306E LEU* 1.3 62.9 + - - +
1308E LEU* 3.8 4.9 - - - +
1309E GLY* 2.9 22.2 + - - -
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Residues in contact with LEU1306 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130E THR* 5.5 6.1 - - + -
1189E GLN* 3.7 41.1 - - + +
1302E ALA 3.0 10.9 + - - +
1303E ASP* 3.3 13.5 - - - +
1305E GLU* 1.3 76.9 - - - +
1307E GLN* 1.3 74.6 + - + +
1309E GLY* 3.1 4.4 + - - -
1310E ALA* 3.0 23.6 + - + +
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Residues in contact with GLN1307 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130E THR* 4.4 14.5 - - + +
1131E ILE* 5.2 0.3 - - - +
1134E HIS* 3.6 21.7 + - - +
1135E ILE* 3.2 34.1 - - + +
1138E THR* 2.6 43.5 + - - +
1303E ASP* 3.0 22.6 + - - +
1304E MET* 3.8 6.3 - - - +
1306E LEU* 1.3 83.1 - - + +
1308E LEU* 1.3 60.7 + - + +
1310E ALA* 3.1 9.5 + - - +
1311E VAL* 2.9 29.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU1308 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996E PRO* 5.4 3.8 - - + +
999E ALA* 3.7 20.8 - - + +
1000E CYS* 3.5 40.8 - - + +
1003E TYR* 3.8 17.0 - - + -
1135E ILE* 4.6 13.9 - - + -
1304E MET* 2.8 48.6 + - + +
1305E GLU* 4.0 7.0 - - - +
1307E GLN* 1.3 79.2 - - + +
1309E GLY* 1.3 61.5 + - - +
1311E VAL* 3.3 10.7 + - + +
1312E LYS* 2.8 28.8 + - - +
----------------------------------------------------------
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Residues in contact with GLY1309 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999E ALA* 5.6 0.4 - - - -
1305E GLU* 2.9 17.4 + - - -
1306E LEU* 3.1 4.2 + - - -
1308E LEU* 1.3 76.9 - - - +
1310E ALA* 1.3 55.5 + - - +
1312E LYS* 3.3 21.8 + - - +
1313E ARG* 2.9 36.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA1310 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127E ASP* 4.5 16.7 - - + +
1130E THR* 5.1 11.9 - - + -
1131E ILE* 5.2 2.0 - - + -
1306E LEU* 3.0 15.6 + - + +
1307E GLN* 3.3 11.7 - - - +
1309E GLY* 1.3 76.9 - - - +
1311E VAL* 1.3 62.8 + - + +
1313E ARG* 3.1 27.1 + - - +
1314E ILE* 3.0 27.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL1311 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999E ALA 4.8 3.4 - - - +
1002E LYS* 6.3 0.7 - - + -
1003E TYR* 3.9 41.3 - - + +
1096E LEU* 4.9 11.2 - - + +
1131E ILE* 3.6 36.1 - - + -
1135E ILE* 4.3 6.1 - - + -
1307E GLN 2.9 18.7 + - - +
1308E LEU* 3.3 14.5 + - + +
1310E ALA* 1.3 74.8 - - - +
1312E LYS* 1.3 57.6 + - - +
1314E ILE* 3.3 4.9 + - + +
1315E HIS* 2.9 29.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS1312 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995E ILE* 5.1 17.8 - - + +
998E ARG* 6.5 0.4 - - + -
999E ALA* 3.9 23.6 - - + +
1308E LEU 2.8 14.9 + - - +
1309E GLY* 3.6 19.5 + - - +
1311E VAL* 1.3 73.1 - - - +
1313E ARG* 1.3 63.0 + - - +
1315E HIS* 3.7 8.2 - - + +
1316E GLY* 2.8 27.5 + - - -
----------------------------------------------------------
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Residues in contact with ARG1313 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123E ARG* 3.3 44.8 - - + +
1127E ASP* 4.2 14.1 + - - -
1193E ASP* 5.1 8.7 + - - -
1309E GLY* 2.9 17.1 + - - +
1310E ALA* 3.1 41.9 + - - +
1312E LYS* 1.3 77.7 - - - +
1314E ILE* 1.3 63.9 + - + +
1316E GLY* 3.3 1.6 + - - -
1317E LEU* 3.0 28.1 + - + +
----------------------------------------------------------
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Residues in contact with ILE1314 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096E LEU* 5.1 18.6 - - + +
1100E LEU* 3.6 28.7 - - + +
1123E ARG* 3.6 24.9 - - + +
1127E ASP* 3.5 31.6 - - + +
1128E CYS* 3.8 7.0 - - + +
1131E ILE* 3.5 27.1 - - + -
1310E ALA 3.0 13.2 + - - +
1311E VAL* 3.7 7.9 - - - +
1313E ARG* 1.3 74.9 - - - +
1315E HIS* 1.3 59.7 + - - +
1317E LEU* 3.1 13.4 + - - +
1318E LEU* 2.9 22.1 + - + -
----------------------------------------------------------
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Residues in contact with HIS1315 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002E LYS* 4.8 22.8 - - + +
1096E LEU* 6.1 5.3 - - + +
1311E VAL* 2.9 20.1 + - + +
1312E LYS* 3.7 10.1 - - + +
1314E ILE* 1.3 75.9 - - + +
1316E GLY* 1.3 62.1 + - - +
1317E LEU 3.0 1.8 - - - -
1318E LEU* 2.7 57.7 + - + +
1319E LYS* 3.4 4.3 + - - +
----------------------------------------------------------
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Residues in contact with GLY1316 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1312E LYS* 2.8 20.9 + - - -
1313E ARG* 3.7 1.8 - - - -
1315E HIS* 1.3 75.9 - - - +
1317E LEU* 1.3 62.2 + - - +
1319E LYS* 3.7 20.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1317 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1100E LEU* 4.3 9.9 - - + -
1103E ARG* 5.4 0.2 - - - +
1104E ILE* 4.1 14.3 - - + +
1111E PHE* 5.1 11.4 - - + -
1120E ILE* 4.2 23.6 - - + -
1123E ARG* 3.2 48.2 - - + +
1313E ARG* 3.0 15.2 + - + +
1314E ILE* 3.2 10.5 - - - +
1316E GLY* 1.3 78.1 - - - +
1318E LEU* 1.3 63.6 + - - +
1319E LYS 3.1 12.1 - - - +
1320E THR* 4.9 1.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU1318 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096E LEU* 6.5 0.9 - - + -
1099E SER* 3.2 46.4 - - - +
1100E LEU* 4.1 11.9 - - + +
1103E ARG* 3.7 20.8 - - + +
1314E ILE* 2.9 8.3 + - + +
1315E HIS* 2.7 51.5 + - + +
1317E LEU* 1.3 72.8 - - - +
1319E LYS* 1.3 59.1 + - - -
1320E THR* 3.1 5.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS1319 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1315E HIS 3.4 4.7 + - - +
1316E GLY* 3.7 16.2 - - - +
1317E LEU* 3.1 12.4 - - - +
1318E LEU* 1.3 76.5 - - - +
1320E THR* 1.3 57.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il