Contacts of the helix formed by residues 1277 - 1319 (chain F) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1277 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324F VAL* 4.7 16.8 - - + +
327F LEU* 3.5 41.7 - - + -
1270F SER* 3.8 6.5 + - - +
1275F LEU 3.7 0.4 - - - -
1276F SER* 1.3 69.9 - - - +
1278F GLY* 1.3 57.2 + - - +
1279F LEU 3.0 0.9 - - - -
1280F VAL* 2.7 31.2 + - + +
1281F GLY* 2.9 11.6 + - - -
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Residues in contact with GLY1278 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324F VAL* 5.2 7.4 - - - +
573F PRO 5.5 4.7 - - - -
577F PHE* 5.1 7.3 - - - -
1034F ALA* 4.7 8.5 - - - +
1037F THR* 4.3 18.8 - - - -
1276F SER* 2.6 8.4 + - - -
1277F ALA* 1.3 74.0 - - - +
1279F LEU* 1.3 57.2 + - - -
1281F GLY* 3.4 2.0 + - - -
1282F LEU* 2.9 27.8 + - - +
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Residues in contact with LEU1279 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1031F TYR* 3.6 36.3 - - + +
1034F ALA* 4.2 19.7 - - + +
1035F LYS* 6.2 2.5 - - + -
1158F TYR* 5.9 0.2 - - + -
1159F VAL* 4.1 24.6 - - + +
1275F LEU* 3.9 20.9 - - + +
1276F SER* 2.5 37.6 + - - +
1278F GLY* 1.3 72.2 - - - -
1280F VAL* 1.3 55.5 + - - +
1282F LEU* 3.4 7.5 - - - +
1283F GLY* 2.9 26.0 + - - -
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Residues in contact with VAL1280 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 4.6 2.5 - - + -
327F LEU* 4.6 2.0 - - + -
1159F VAL* 6.1 0.4 - - - -
1266F SER* 3.5 31.6 - - - +
1267F ILE* 3.7 26.5 - - + -
1270F SER* 3.4 24.7 - - - +
1275F LEU* 3.4 26.0 - - + -
1277F ALA* 2.7 21.2 + - + +
1279F LEU* 1.3 69.9 - - - +
1281F GLY* 1.3 66.5 + - - +
1282F LEU 3.2 0.2 + - - -
1283F GLY* 3.2 2.1 + - - -
1284F LEU* 3.0 33.1 + - + +
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Residues in contact with GLY1281 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 4.7 0.2 - - - -
324F VAL* 4.3 17.4 - - - +
577F PHE* 2.9 20.2 - - - -
1277F ALA 2.9 11.2 + - - -
1278F GLY* 3.8 3.1 - - - -
1280F VAL* 1.3 76.8 - - - +
1282F LEU* 1.3 57.1 + - - +
1284F LEU* 3.1 17.6 - - - +
1285F THR* 2.9 26.7 + - - -
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Residues in contact with LEU1282 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577F PHE* 3.3 20.5 - - + -
1030F ASP 3.8 6.3 - - - +
1031F TYR* 3.4 54.3 - - + +
1034F ALA* 3.6 15.7 - - + -
1155F VAL* 3.8 2.9 - - + -
1159F VAL* 3.6 17.5 - - + -
1278F GLY 2.9 13.0 + - - +
1279F LEU* 3.4 7.9 - - - +
1280F VAL 3.1 0.2 - - - -
1281F GLY* 1.3 77.1 - - - +
1283F GLY* 1.3 64.1 + - - +
1285F THR* 3.4 0.9 + - - -
1286F TYR* 3.0 57.4 + - + +
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Residues in contact with GLY1283 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156F ILE* 3.3 17.6 - - - +
1159F VAL* 3.8 25.8 - - - -
1262F ALA* 4.8 5.2 - - - +
1266F SER* 5.4 3.4 - - - -
1279F LEU 2.9 14.6 + - - -
1280F VAL* 3.8 2.0 - - - -
1282F LEU* 1.3 76.5 - - - +
1284F LEU* 1.3 58.1 + - - +
1286F TYR* 3.1 1.6 + - - -
1287F ALA* 2.9 24.8 + - - +
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Residues in contact with LEU1284 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 3.5 39.0 - - + -
323F ILE* 3.6 40.2 - - + -
362F LEU* 5.8 0.7 - - + -
1259F VAL* 5.8 0.9 - - + +
1262F ALA* 5.1 4.3 - - - -
1263F ALA* 4.6 21.3 - - + -
1266F SER* 5.3 1.4 + - - +
1267F ILE* 5.2 1.1 - - + -
1280F VAL* 3.0 25.3 + - + +
1281F GLY* 3.1 21.1 - - - +
1283F GLY* 1.3 76.9 - - - +
1285F THR* 1.3 71.3 + - - +
1287F ALA* 3.1 9.4 + - + +
1288F LEU* 2.9 36.3 + - + +
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Residues in contact with THR1285 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320F ILE* 3.3 15.3 - - + +
577F PHE* 3.0 29.4 - - + -
581F SER* 2.7 41.7 + - - +
584F HIS* 4.2 16.6 - - + -
585F ILE* 6.6 0.4 - - + -
1281F GLY 2.9 7.7 + - - -
1284F LEU* 1.3 79.6 - - - +
1286F TYR* 1.3 61.6 + - + +
1288F LEU* 3.3 11.3 + - + +
1289F MET* 2.8 25.2 + - + +
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Residues in contact with TYR1286 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577F PHE* 4.7 10.0 - + - -
584F HIS* 4.4 15.7 - + - -
1027F VAL* 4.8 7.8 - - + -
1030F ASP* 2.5 43.9 + - - +
1031F TYR* 4.2 1.4 + - + -
1152F ALA* 4.0 13.0 - - + -
1155F VAL* 3.4 43.3 - - + -
1156F ILE* 3.5 20.0 - - + -
1282F LEU* 3.0 37.6 + - + +
1283F GLY 3.1 1.5 + - - +
1285F THR* 1.3 80.3 - - + +
1287F ALA* 1.3 60.6 + - - +
1289F MET* 3.1 13.7 - - + +
1290F VAL* 2.9 32.6 + - - +
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Residues in contact with ALA1287 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1156F ILE* 4.0 4.7 - - + +
1258F VAL* 4.5 7.0 - - + +
1259F VAL* 3.1 40.4 - - + +
1262F ALA* 3.9 16.8 - - + -
1283F GLY 2.9 12.2 + - - +
1284F LEU* 3.1 12.5 + - - +
1286F TYR* 1.3 74.5 - - - +
1288F LEU* 1.3 59.6 + - - +
1290F VAL* 3.2 6.8 + - - +
1291F SER 2.9 24.6 + - - -
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Residues in contact with LEU1288 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316F GLY* 4.7 8.7 - - - -
320F ILE* 3.8 27.4 - - + -
362F LEU* 3.8 29.2 - - + -
366F LEU* 4.6 13.0 - - + -
370F ARG* 5.0 2.1 + - - -
585F ILE* 4.1 24.2 - - + -
1259F VAL* 3.9 17.3 - - + -
1284F LEU* 2.9 34.9 + - + +
1285F THR* 3.3 10.3 + - + +
1287F ALA* 1.3 73.5 - - - +
1289F MET* 1.3 64.3 + - - +
1291F SER* 3.3 3.7 + - - -
1292F ASN* 2.9 24.8 + - - +
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Residues in contact with MET1289 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584F HIS* 3.9 36.3 - - + +
1148F LEU* 3.6 41.7 - - + +
1152F ALA* 4.5 13.0 - - + -
1285F THR 2.8 17.8 + - - +
1286F TYR* 3.1 21.3 - - + +
1288F LEU* 1.3 72.0 - - - +
1290F VAL* 1.3 59.8 + - - +
1292F ASN* 3.1 2.6 + - - -
1293F TYR* 2.9 73.3 + - + +
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Residues in contact with VAL1290 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149F CYS* 4.4 8.3 - - - +
1152F ALA* 3.6 23.6 - - + -
1153F LEU* 3.7 30.1 - - + +
1156F ILE* 4.9 6.1 - - + -
1255F GLY* 5.5 2.9 - - - -
1258F VAL* 4.8 17.9 - - + -
1286F TYR 2.9 20.9 + - - +
1287F ALA* 3.7 6.3 - - - +
1289F MET* 1.3 71.5 - - - +
1291F SER* 1.3 69.1 + - - +
1292F ASN 2.9 0.3 + - - -
1293F TYR* 4.4 1.6 - - - +
1294F LEU* 2.8 50.3 + - + +
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Residues in contact with SER1291 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366F LEU* 4.6 7.7 - - - +
370F ARG* 4.1 10.6 + - - -
1252F GLU* 3.2 36.0 + - - +
1255F GLY* 3.8 24.9 + - - -
1256F ALA* 4.0 3.5 + - - +
1259F VAL* 3.4 29.1 - - - +
1287F ALA 2.9 8.1 + - - -
1288F LEU* 3.3 5.8 + - - -
1290F VAL* 1.3 76.5 - - - +
1292F ASN* 1.3 62.1 + - - +
1294F LEU* 4.8 1.5 + - - +
1295F ASN* 5.0 2.8 + - - +
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Residues in contact with ASN1292 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370F ARG* 3.9 18.6 - - - +
585F ILE* 5.3 6.2 - - - +
588F THR* 3.5 24.4 - - - -
1252F GLU* 5.3 0.2 - - - +
1288F LEU 2.9 12.2 + - - +
1289F MET* 3.3 9.2 - - - +
1291F SER* 1.3 81.7 - - - +
1293F TYR* 1.3 80.2 + - + +
1294F LEU 3.5 0.9 + - - -
1295F ASN* 4.0 7.4 + - - +
1296F TRP* 4.2 33.9 - - - +
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Residues in contact with TYR1293 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584F HIS* 3.7 8.5 + - - -
587F VAL* 4.4 1.6 - - - +
588F THR* 3.3 29.3 + - - -
591F PHE* 5.7 4.0 - - + -
1144F ARG* 6.3 4.7 - - + -
1145F SER* 4.1 22.6 - - - +
1148F LEU* 5.2 8.1 - - + -
1149F CYS* 5.5 3.8 - - + +
1289F MET* 2.9 70.6 + - + +
1290F VAL* 4.6 1.3 - - - +
1292F ASN* 1.3 91.9 - - + +
1294F LEU* 1.3 59.8 + - - +
1295F ASN 3.3 2.2 - - - -
1296F TRP* 3.3 41.5 + + - +
1297F MET* 2.9 27.8 + - - +
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Residues in contact with LEU1294 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149F CYS* 3.6 18.8 - - - +
1153F LEU* 5.6 0.7 - - + -
1174F CYS* 5.5 4.0 - - - -
1251F MET* 3.6 47.3 - - + +
1254F ILE* 5.6 4.7 - - + -
1255F GLY* 5.5 6.5 - - - +
1290F VAL* 2.8 32.2 + - + +
1291F SER* 5.2 1.8 - - - +
1293F TYR* 1.3 77.6 - - - +
1295F ASN* 1.3 59.3 + - - +
1297F MET* 3.1 36.0 + - + +
1298F VAL* 3.0 29.8 + - - +
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Residues in contact with ASN1295 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1247F LEU* 5.4 0.4 - - - +
1248F GLU* 2.6 69.5 + - - +
1251F MET* 4.3 12.9 - - + +
1252F GLU* 3.9 21.5 + - - +
1291F SER 5.0 1.5 + - - +
1292F ASN 4.0 7.0 + - - +
1293F TYR 3.3 0.4 - - - -
1294F LEU* 1.3 80.7 - - + +
1296F TRP* 1.3 69.7 + - + +
1298F VAL* 3.3 10.8 + - - +
1299F ARG* 2.9 21.3 + - - +
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Residues in contact with TRP1296 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588F THR* 3.5 31.4 - - - -
589F PRO* 5.4 0.4 - - + -
591F PHE* 4.6 11.9 - - + -
592F LEU* 4.8 22.7 - - + -
1144F ARG* 6.4 3.1 - - - -
1145F SER* 3.9 12.8 - - - +
1248F GLU* 5.3 1.6 - - - -
1292F ASN* 4.2 24.7 + - - +
1293F TYR* 3.3 43.6 + + - +
1295F ASN* 1.3 80.4 - - + +
1297F MET* 1.3 62.1 + - - +
1299F ARG* 3.2 36.0 - - - +
1300F ASN* 2.8 38.1 + - - +
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Residues in contact with MET1297 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1142F LEU* 5.0 4.6 - - + +
1145F SER* 3.7 15.8 - - - -
1146F THR* 3.4 42.8 - - - +
1149F CYS* 3.8 17.3 - - - -
1150F VAL* 5.6 1.6 - - - -
1174F CYS* 6.2 2.7 - - - -
1178F GLN* 6.0 0.9 - - - +
1293F TYR 2.9 14.4 + - - +
1294F LEU* 3.1 37.7 + - + +
1296F TRP* 1.3 76.5 - - - +
1298F VAL* 1.3 68.3 + - + +
1300F ASN* 3.5 2.6 + - - +
1301F LEU* 2.9 29.1 + - + +
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Residues in contact with VAL1298 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174F CYS* 5.5 0.4 - - - -
1178F GLN* 4.3 16.2 - - + +
1247F LEU* 3.9 28.0 - - + -
1251F MET* 3.7 32.1 - - + -
1294F LEU* 3.0 13.6 + - + +
1295F ASN* 3.7 11.9 - - - +
1296F TRP 3.2 0.2 - - - -
1297F MET* 1.3 89.4 - - + +
1299F ARG* 1.3 65.2 + - - +
1301F LEU* 3.1 12.0 + - + +
1302F ALA* 2.9 21.9 + - + +
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Residues in contact with ARG1299 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377F TYR* 5.6 7.4 - - - -
592F LEU* 5.7 8.3 - - - +
1244F ASN* 4.7 22.9 - - - +
1245F ARG* 4.8 4.4 - - - +
1248F GLU* 3.9 26.9 + - - +
1295F ASN* 2.9 12.1 + - - +
1296F TRP* 3.2 48.4 - - - +
1298F VAL* 1.3 78.0 - - - +
1300F ASN* 1.3 66.6 + - - +
1302F ALA* 3.2 6.7 + - + +
1303F ASP* 2.9 48.5 + - - +
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Residues in contact with ASN1300 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138F THR* 4.0 7.4 - - + +
1141F CYS* 3.5 29.4 - - - +
1142F LEU* 3.5 23.0 - - + +
1145F SER* 3.4 21.0 + - - -
1296F TRP* 2.8 29.6 + - - +
1297F MET 3.9 1.6 - - - +
1299F ARG* 1.3 84.4 + - - +
1301F LEU* 1.3 60.4 + - - +
1303F ASP* 4.4 9.5 - - - +
1304F MET* 2.9 33.6 + - - +
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Residues in contact with LEU1301 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142F LEU* 3.5 21.0 - - + +
1182F ARG* 4.4 25.4 - - - +
1297F MET* 2.9 16.0 + - + +
1298F VAL* 3.3 13.7 - - + +
1300F ASN* 1.3 77.1 - - - +
1302F ALA* 1.3 60.0 + - - +
1304F MET* 3.8 1.0 - - + -
1305F GLU* 2.9 41.7 + - + +
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Residues in contact with ALA1302 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181F PHE* 5.7 9.4 - - + -
1182F ARG* 6.3 2.2 - - + +
1185F SER* 6.2 0.7 - - - +
1298F VAL* 2.9 13.4 + - + +
1299F ARG* 3.2 10.7 + - + +
1301F LEU* 1.3 81.8 - - + +
1303F ASP* 1.3 66.2 + - - +
1305F GLU* 3.1 8.9 + - - +
1306F LEU* 3.0 21.1 + - - +
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Residues in contact with ASP1303 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138F THR* 4.2 14.1 - - + +
1244F ASN* 5.7 2.3 + - - -
1299F ARG* 2.9 39.4 + - - +
1300F ASN* 4.1 8.6 - - - +
1302F ALA* 1.3 79.3 - - - +
1304F MET* 1.3 58.0 + - - +
1306F LEU* 3.2 13.1 + - - +
1307F GLN* 3.0 31.8 + - - +
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Residues in contact with MET1304 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000F CYS* 3.9 24.2 - - + -
1003F TYR* 6.1 2.9 - - + -
1135F ILE* 5.9 3.4 - - + -
1138F THR* 3.5 16.9 - - + +
1139F LEU* 3.6 43.7 - - + -
1142F LEU* 3.5 25.8 - - + -
1300F ASN 2.9 18.8 + - - +
1301F LEU* 4.1 1.3 - - + +
1303F ASP* 1.3 73.3 - - - +
1305F GLU* 1.3 60.7 + - - +
1307F GLN* 4.2 5.8 - - - +
1308F LEU* 2.8 53.0 + - + +
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Residues in contact with GLU1305 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995F ILE* 5.9 0.3 - - - +
996F PRO* 3.3 38.4 - - - +
1182F ARG* 4.1 24.8 + - - +
1186F ARG* 5.0 5.6 + - + +
1301F LEU* 2.9 27.1 + - + +
1302F ALA* 3.2 12.8 - - - +
1304F MET* 1.3 77.1 - - - +
1306F LEU* 1.3 63.5 + - - +
1308F LEU* 3.4 4.7 + - - +
1309F GLY* 2.9 22.3 + - - -
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Residues in contact with LEU1306 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130F THR* 5.5 5.8 - - + -
1189F GLN* 3.7 41.1 - - + +
1302F ALA 3.0 11.9 + - - +
1303F ASP* 3.3 13.5 - - - +
1305F GLU* 1.3 77.4 - - - +
1307F GLN* 1.3 75.5 + - + +
1309F GLY* 3.1 3.7 + - - -
1310F ALA* 3.0 23.7 + - + +
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Residues in contact with GLN1307 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130F THR* 4.4 14.9 - - + +
1131F ILE* 5.2 0.3 - - - +
1134F HIS* 3.6 20.9 + - - +
1135F ILE* 3.2 33.7 - - + +
1138F THR* 2.6 43.0 + - - +
1303F ASP* 3.0 21.8 + - - +
1304F MET* 3.2 6.9 + - - +
1306F LEU* 1.3 84.7 - - + +
1308F LEU* 1.3 60.6 + - + +
1310F ALA* 3.1 9.3 + - - +
1311F VAL* 2.9 30.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU1308 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996F PRO* 5.4 4.5 - - + +
999F ALA* 3.7 19.5 - - + +
1000F CYS* 3.5 41.1 - - + +
1003F TYR* 3.8 18.2 - - + -
1135F ILE* 4.6 13.7 - - + -
1304F MET* 2.8 48.4 + - + +
1305F GLU* 4.0 6.7 - - - +
1307F GLN* 1.3 79.6 - - + +
1309F GLY* 1.3 60.9 + - - +
1311F VAL* 3.3 10.7 + - + +
1312F LYS* 2.8 28.6 + - - +
----------------------------------------------------------
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Residues in contact with GLY1309 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999F ALA* 5.6 0.2 - - - -
1305F GLU* 2.9 17.4 + - - -
1306F LEU* 3.1 4.5 + - - -
1308F LEU* 1.3 76.6 - - - +
1310F ALA* 1.3 55.3 + - - +
1312F LYS* 3.3 22.1 + - - +
1313F ARG* 2.9 35.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA1310 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127F ASP* 4.5 16.4 - - + +
1130F THR* 5.1 12.3 - - + -
1131F ILE* 5.2 2.0 - - + -
1306F LEU* 3.0 15.8 + - + +
1307F GLN* 3.1 12.1 + - - +
1309F GLY* 1.3 76.6 - - - +
1311F VAL* 1.3 62.4 + - + +
1313F ARG* 3.1 26.7 + - - +
1314F ILE* 3.0 27.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL1311 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999F ALA 4.8 3.6 - - - +
1002F LYS* 6.3 0.9 - - + -
1003F TYR* 3.9 41.5 - - + +
1096F LEU* 4.9 12.2 - - + +
1131F ILE* 3.6 35.0 - - + -
1135F ILE* 4.3 6.3 - - + -
1307F GLN 2.9 18.6 + - - +
1308F LEU* 3.3 14.6 + - + +
1310F ALA* 1.3 74.0 - - - +
1312F LYS* 1.3 57.8 + - - +
1314F ILE* 3.3 4.1 + - + +
1315F HIS* 2.9 29.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS1312 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995F ILE* 5.1 18.4 - - + +
998F ARG* 6.5 0.7 - - + -
999F ALA* 3.9 24.7 - - + +
1308F LEU 2.8 15.4 + - - +
1309F GLY* 3.6 19.1 + - - +
1310F ALA 3.2 0.2 - - - -
1311F VAL* 1.3 74.4 - - - +
1313F ARG* 1.3 62.4 + - - +
1315F HIS* 4.3 9.0 - - + -
1316F GLY* 2.8 28.5 + - - -
----------------------------------------------------------
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Residues in contact with ARG1313 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123F ARG* 3.3 44.0 - - + +
1127F ASP* 4.2 14.7 + - - -
1193F ASP* 5.1 8.7 + - - -
1309F GLY* 2.9 16.8 + - - +
1310F ALA* 3.2 41.6 + - - +
1312F LYS* 1.3 77.6 - - - +
1314F ILE* 1.3 63.3 + - - +
1315F HIS 3.2 0.2 + - - -
1316F GLY* 3.3 1.4 + - - -
1317F LEU* 3.0 28.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE1314 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096F LEU* 5.1 17.9 - - + -
1100F LEU* 3.6 29.7 - - + +
1123F ARG* 3.6 24.9 - - + +
1127F ASP* 3.5 31.4 - - + +
1128F CYS* 3.8 6.7 - - + +
1131F ILE* 3.5 27.1 - - + -
1310F ALA 3.0 12.2 + - - +
1311F VAL* 3.7 7.9 - - - +
1313F ARG* 1.3 75.8 - - - +
1315F HIS* 1.3 59.6 + - - +
1317F LEU* 3.1 13.4 + - - +
1318F LEU* 2.9 21.6 + - + +
----------------------------------------------------------
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Residues in contact with HIS1315 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002F LYS* 4.8 23.4 - - + +
1096F LEU* 6.1 6.2 - - + +
1311F VAL* 2.9 19.6 + - + +
1312F LYS* 3.7 9.6 - - + +
1313F ARG 3.1 0.4 - - - -
1314F ILE* 1.3 74.7 - - - +
1316F GLY* 1.3 61.4 + - - +
1317F LEU 3.0 1.3 - - - -
1318F LEU* 2.7 57.2 + - + +
1319F LYS* 3.4 4.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY1316 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1312F LYS* 2.8 20.9 + - - -
1313F ARG* 3.7 2.0 - - - -
1315F HIS* 1.3 76.3 - - - +
1317F LEU* 1.3 63.4 + - - +
1319F LYS* 3.7 19.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1317 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1100F LEU* 4.3 9.9 - - + -
1104F ILE* 4.1 14.4 - - - +
1111F PHE* 5.1 11.4 - - + -
1120F ILE* 4.2 23.8 - - + -
1123F ARG* 3.2 48.2 - - + +
1313F ARG* 3.0 16.9 + - + +
1314F ILE* 3.2 10.3 - - - +
1315F HIS 3.0 0.2 - - - -
1316F GLY* 1.3 77.5 - - - +
1318F LEU* 1.3 62.4 + - - +
1319F LYS 3.1 12.5 - - - +
1320F THR* 4.9 1.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU1318 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096F LEU* 6.5 1.3 - - + -
1099F SER* 3.2 46.4 - - - +
1100F LEU* 4.1 11.9 - - + +
1103F ARG* 3.7 20.6 - - + +
1314F ILE* 2.9 7.9 + - + +
1315F HIS* 2.7 52.1 + - + +
1317F LEU* 1.3 71.6 - - - +
1319F LYS* 1.3 58.2 + - - -
1320F THR* 3.1 6.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS1319 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1315F HIS 3.4 4.1 + - - +
1316F GLY* 3.7 16.3 - - - +
1317F LEU* 3.1 12.0 - - - +
1318F LEU* 1.3 74.8 - - - +
1320F THR* 1.3 58.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il