Contacts of the helix formed by residues 1277 - 1319 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1277 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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324G VAL* 4.7 16.3 - - + +
327G LEU* 3.5 41.5 - - + -
328G GLY* 6.4 0.4 - - - -
1270G SER* 3.8 6.3 + - - +
1275G LEU 3.7 0.4 - - - -
1276G SER* 1.3 70.8 - - - +
1278G GLY* 1.3 58.3 + - - +
1279G LEU 3.0 0.9 - - - -
1280G VAL* 2.7 30.1 + - + +
1281G GLY* 2.9 11.6 + - - -
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Residues in contact with GLY1278 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324G VAL* 5.2 7.0 - - - +
573G PRO 5.5 4.9 - - - -
577G PHE* 5.1 6.9 - - - -
1034G ALA* 4.7 8.1 - - - +
1037G THR* 4.3 19.7 - - - -
1276G SER* 2.6 8.6 + - - -
1277G ALA* 1.3 74.6 - - - +
1279G LEU* 1.3 56.0 + - - -
1281G GLY* 3.4 2.6 + - - -
1282G LEU* 2.9 28.5 + - - +
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Residues in contact with LEU1279 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1031G TYR* 3.6 36.6 - - + +
1034G ALA* 4.2 20.4 - - + +
1035G LYS* 6.2 2.5 - - + -
1159G VAL* 4.1 24.6 - - + +
1275G LEU* 3.9 20.4 - - + +
1276G SER* 2.5 37.7 + - - +
1278G GLY* 1.3 73.0 - - - -
1280G VAL* 1.3 55.6 + - - +
1282G LEU* 3.2 7.8 + - - +
1283G GLY* 2.9 26.0 + - - -
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Residues in contact with VAL1280 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 4.6 2.9 - - + -
324G VAL* 6.3 0.2 - - + -
327G LEU* 4.6 2.0 - - + -
1159G VAL* 6.1 0.4 - - - -
1266G SER* 3.5 30.1 - - - +
1267G ILE* 3.7 26.2 - - + -
1270G SER* 3.4 24.0 - - - +
1275G LEU* 3.4 26.7 - - + -
1277G ALA* 2.7 21.2 + - + +
1279G LEU* 1.3 68.4 - - - +
1281G GLY* 1.3 66.7 + - - +
1283G GLY* 3.2 2.5 + - - -
1284G LEU* 3.0 34.2 + - + +
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Residues in contact with GLY1281 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 4.7 0.2 - - - -
324G VAL* 4.3 18.0 - - - +
577G PHE* 2.9 20.6 - - - -
1277G ALA 2.9 11.8 + - - -
1278G GLY* 3.8 3.6 - - - -
1280G VAL* 1.3 76.3 - - - +
1282G LEU* 1.3 56.3 + - - +
1284G LEU* 3.1 16.9 - - - +
1285G THR* 2.9 26.3 + - - -
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Residues in contact with LEU1282 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577G PHE* 3.3 20.3 - - + -
1030G ASP 3.8 6.5 - - - +
1031G TYR* 3.4 55.6 - - + +
1034G ALA* 3.6 15.9 - - + -
1155G VAL* 3.8 2.9 - - + -
1159G VAL* 3.6 16.8 - - + -
1278G GLY 2.9 12.8 + - - +
1279G LEU 3.4 7.6 - - - +
1280G VAL 3.1 0.4 - - - -
1281G GLY* 1.3 77.4 - - - +
1283G GLY* 1.3 65.7 + - - +
1285G THR* 3.4 0.7 + - - -
1286G TYR* 3.0 57.6 + - + +
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Residues in contact with GLY1283 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G ILE* 3.3 17.5 - - - +
1159G VAL* 3.8 26.0 - - - -
1262G ALA* 4.8 4.8 - - - +
1266G SER* 5.4 4.0 - - - -
1279G LEU 2.9 14.6 + - - -
1280G VAL 3.2 2.7 + - - -
1282G LEU* 1.3 76.8 - - - +
1284G LEU* 1.3 57.0 + - - +
1286G TYR* 3.1 2.2 + - - -
1287G ALA* 2.9 24.6 + - - +
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Residues in contact with LEU1284 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 3.5 40.8 - - + -
323G ILE* 3.5 40.6 - - + -
362G LEU* 5.8 0.7 - - + -
1259G VAL* 6.1 0.7 - - + -
1262G ALA* 5.1 3.8 - - - -
1263G ALA* 4.6 23.1 - - + +
1266G SER* 5.3 1.7 + - - +
1267G ILE* 5.2 1.1 - - + -
1280G VAL* 3.0 25.5 + - + +
1281G GLY* 3.1 20.0 - - - +
1283G GLY* 1.3 76.5 - - - +
1285G THR* 1.3 71.1 + - - +
1287G ALA* 3.1 10.4 + - + +
1288G LEU* 2.9 36.8 + - + +
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Residues in contact with THR1285 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320G ILE* 3.3 15.7 - - + +
577G PHE* 3.0 29.3 - - + -
581G SER* 2.7 42.5 + - - +
584G HIS* 4.2 16.6 - - + -
585G ILE* 6.5 0.4 - - + -
1281G GLY 2.9 7.3 + - - -
1284G LEU* 1.3 79.6 - - - +
1286G TYR* 1.3 61.2 + - + +
1288G LEU* 3.3 11.6 + - + +
1289G MET* 2.8 24.8 + - + +
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Residues in contact with TYR1286 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577G PHE* 4.7 10.1 - + - -
584G HIS* 4.4 16.4 - + - -
1027G VAL* 4.8 7.5 - - + -
1030G ASP* 2.5 43.5 + - - +
1031G TYR* 4.2 1.5 + - + -
1152G ALA* 4.0 12.6 - - + -
1155G VAL* 3.4 42.8 - - + -
1156G ILE* 3.5 19.3 - - + -
1282G LEU* 3.0 37.8 + - + +
1283G GLY 3.1 1.3 + - - +
1285G THR* 1.3 79.7 - - + +
1287G ALA* 1.3 60.8 + - - +
1289G MET* 3.1 14.8 - - + +
1290G VAL* 2.9 32.1 + - - +
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Residues in contact with ALA1287 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G ILE* 4.0 4.9 - - + +
1255G GLY 4.9 0.2 - - - +
1258G VAL* 4.5 6.8 - - + +
1259G VAL* 3.1 39.7 - - + +
1262G ALA* 3.9 16.8 - - + -
1283G GLY 2.9 12.8 + - - +
1284G LEU* 3.1 12.1 + - - +
1286G TYR* 1.3 73.5 - - - +
1288G LEU* 1.3 60.1 + - - +
1290G VAL* 3.2 7.4 + - - +
1291G SER 2.9 24.9 + - - -
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Residues in contact with LEU1288 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316G GLY* 4.7 8.1 - - - -
320G ILE* 3.8 27.6 - - + -
362G LEU* 3.8 29.4 - - + -
366G LEU* 4.6 14.4 - - + -
370G ARG* 5.0 2.1 + - - -
585G ILE* 4.1 24.7 - - + -
1259G VAL* 3.9 16.6 - - + -
1284G LEU* 2.9 33.7 + - + +
1285G THR* 3.4 11.0 - - + +
1287G ALA* 1.3 75.8 - - - +
1289G MET* 1.3 63.4 + - - +
1291G SER* 3.3 3.9 + - - -
1292G ASN* 2.9 25.0 + - - +
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Residues in contact with MET1289 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584G HIS* 3.9 36.3 - - + +
1148G LEU* 3.6 41.7 - - + +
1152G ALA* 4.5 13.5 - - + -
1285G THR* 2.8 17.2 + - + +
1286G TYR* 3.1 21.8 - - + +
1288G LEU* 1.3 71.8 - - - +
1290G VAL* 1.3 56.7 + - - +
1292G ASN* 3.1 2.7 + - - -
1293G TYR* 2.9 72.4 + - + +
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Residues in contact with VAL1290 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149G CYS* 4.4 7.4 - - - +
1152G ALA* 3.6 23.3 - - + -
1153G LEU* 3.7 30.3 - - + +
1156G ILE* 4.9 6.1 - - + -
1255G GLY* 5.5 2.7 - - - -
1258G VAL* 4.8 18.6 - - + -
1286G TYR 2.9 20.7 + - - +
1287G ALA* 3.7 6.3 - - - +
1289G MET* 1.3 71.5 - - - +
1291G SER* 1.3 69.3 + - - +
1292G ASN 2.9 0.3 + - - -
1293G TYR* 4.4 1.6 - - - +
1294G LEU* 2.8 51.5 + - + +
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Residues in contact with SER1291 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366G LEU* 4.6 6.6 - - - +
370G ARG* 4.1 10.5 + - - -
1252G GLU* 3.1 36.4 + - - +
1255G GLY* 3.8 24.2 + - - -
1256G ALA* 4.0 3.3 + - - +
1259G VAL* 3.4 29.7 - - - +
1287G ALA 2.9 7.3 + - - -
1288G LEU* 3.3 5.8 + - - -
1290G VAL* 1.3 76.5 - - - +
1292G ASN* 1.3 60.4 + - - +
1294G LEU* 4.8 1.3 + - - +
1295G ASN 5.0 2.4 + - - -
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Residues in contact with ASN1292 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370G ARG* 3.9 18.9 - - - +
585G ILE* 5.3 6.6 - - - +
588G THR* 3.5 24.9 - - - -
1252G GLU* 5.3 0.3 - - - +
1288G LEU 2.9 12.7 + - - +
1289G MET* 3.3 9.6 - - - +
1291G SER* 1.3 80.8 - - - +
1293G TYR* 1.3 80.5 + - + +
1294G LEU 3.5 0.6 + - - -
1295G ASN* 4.0 8.3 + - - +
1296G TRP* 4.2 33.7 + - - +
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Residues in contact with TYR1293 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584G HIS 3.7 8.6 + - - -
587G VAL* 4.4 1.4 - - - +
588G THR* 3.3 29.7 + - - -
591G PHE* 5.7 3.6 - - + -
1144G ARG* 6.3 4.9 - - + -
1145G SER* 4.1 24.3 - - - +
1148G LEU* 5.2 7.2 - - + -
1149G CYS* 5.5 4.3 - - + +
1289G MET* 2.9 68.0 + - + +
1290G VAL* 5.2 1.3 - - - -
1292G ASN* 1.3 93.1 - - + +
1294G LEU* 1.3 60.4 + - - +
1295G ASN 3.3 2.2 - - - -
1296G TRP* 3.3 41.0 + + - +
1297G MET* 2.9 27.2 + - - +
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Residues in contact with LEU1294 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1149G CYS* 3.6 19.0 - - - +
1153G LEU* 5.6 0.9 - - + -
1174G CYS* 5.5 4.3 - - - -
1251G MET* 3.6 46.9 - - + +
1254G ILE* 5.6 5.4 - - + -
1255G GLY* 5.5 6.7 - - - +
1290G VAL* 2.8 32.5 + - + +
1291G SER* 5.2 2.0 - - - -
1293G TYR* 1.3 77.8 - - - +
1295G ASN* 1.3 59.3 + - - +
1297G MET* 3.1 37.1 + - + +
1298G VAL* 3.0 25.7 + - + +
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Residues in contact with ASN1295 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1247G LEU* 6.2 0.4 - - - +
1248G GLU* 2.6 71.4 + - - +
1251G MET* 4.3 12.9 - - + +
1252G GLU* 3.9 21.6 + - - +
1291G SER 5.0 1.4 + - - +
1292G ASN 4.0 7.2 + - - +
1293G TYR 3.3 0.4 - - - -
1294G LEU* 1.3 81.0 - - + +
1296G TRP* 1.3 69.4 + - + +
1298G VAL* 3.3 9.0 + - - +
1299G ARG* 2.9 21.4 + - - +
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Residues in contact with TRP1296 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588G THR* 3.5 31.4 - - - -
589G PRO* 5.4 0.4 - - + -
591G PHE* 4.6 12.6 - - + -
592G LEU* 4.8 22.0 - - + -
1144G ARG* 6.4 2.7 - - - -
1145G SER* 3.9 13.2 - - - +
1248G GLU* 5.3 1.3 - - - -
1292G ASN* 4.2 24.3 + - - +
1293G TYR* 3.3 43.6 + + - +
1295G ASN* 1.3 79.6 - - + +
1297G MET* 1.3 61.8 + - - +
1299G ARG* 3.2 37.0 - - - +
1300G ASN* 2.8 38.3 + - - +
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Residues in contact with MET1297 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142G LEU* 5.0 4.4 - - + +
1145G SER* 3.7 16.8 - - - +
1146G THR* 3.4 42.8 - - - +
1149G CYS* 3.8 17.7 - - + -
1150G VAL* 5.6 2.0 - - - -
1174G CYS* 6.2 3.4 - - - -
1178G GLN* 6.0 1.1 - - - +
1293G TYR 2.9 14.3 + - - +
1294G LEU* 3.1 37.2 - - + +
1296G TRP* 1.3 75.6 - - - +
1298G VAL* 1.3 68.4 + - + +
1300G ASN* 3.8 2.3 - - - +
1301G LEU* 2.9 30.2 + - + +
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Residues in contact with VAL1298 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174G CYS* 5.5 0.2 - - - -
1178G GLN* 4.3 16.8 - - + +
1247G LEU* 3.9 27.6 - - + -
1251G MET* 3.7 31.2 - - + -
1294G LEU* 3.0 13.8 + - + +
1295G ASN* 3.7 12.6 - - - +
1296G TRP 3.2 0.2 - - - -
1297G MET* 1.3 87.9 - - + +
1299G ARG* 1.3 64.4 + - - +
1301G LEU* 3.1 10.2 + - + +
1302G ALA* 2.9 22.9 + - + +
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Residues in contact with ARG1299 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377G TYR* 5.6 7.4 - - - -
592G LEU* 5.7 8.5 - - - +
1244G ASN* 4.7 23.8 - - - +
1245G ARG* 4.8 4.2 - - - +
1248G GLU* 3.9 27.2 + - - +
1295G ASN* 2.9 11.5 + - - +
1296G TRP* 3.2 50.0 - - - +
1298G VAL* 1.3 79.2 - - - +
1300G ASN* 1.3 66.6 + - - +
1302G ALA* 3.2 8.1 + - + +
1303G ASP* 2.9 49.5 + - - +
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Residues in contact with ASN1300 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1138G THR* 4.0 8.7 - - + +
1141G CYS* 3.5 28.5 - - + +
1142G LEU* 3.7 22.7 - - + +
1145G SER* 3.4 20.6 + - - -
1296G TRP* 2.8 29.7 + - - +
1297G MET 3.9 1.3 - - - +
1299G ARG* 1.3 83.7 + - - +
1301G LEU* 1.3 61.0 + - - +
1303G ASP* 4.4 9.8 - - - +
1304G MET* 2.9 33.6 + - - +
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Residues in contact with LEU1301 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142G LEU* 3.5 21.4 - - + +
1182G ARG* 4.4 26.0 - - - +
1297G MET* 2.9 15.8 + - + +
1298G VAL* 3.3 13.5 - - + +
1300G ASN* 1.3 77.2 - - - +
1302G ALA* 1.3 60.5 + - + +
1304G MET* 3.8 1.1 - - + -
1305G GLU* 2.9 41.0 + - + +
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Residues in contact with ALA1302 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181G PHE* 5.7 9.0 - - + -
1182G ARG* 6.3 1.8 - - + +
1185G SER* 6.2 0.2 - - - +
1298G VAL* 2.9 13.6 + - + +
1299G ARG* 3.2 11.6 + - + +
1301G LEU* 1.3 80.2 - - + +
1303G ASP* 1.3 66.6 + - - +
1305G GLU* 3.1 9.5 + - - +
1306G LEU* 3.0 20.8 + - - +
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Residues in contact with ASP1303 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138G THR* 4.2 14.4 - - + +
1244G ASN* 5.7 2.3 + - - -
1299G ARG* 2.9 39.7 + - - +
1300G ASN* 4.1 8.8 - - - +
1302G ALA* 1.3 79.0 - - - +
1304G MET* 1.3 57.4 + - - +
1306G LEU* 3.2 14.2 + - - +
1307G GLN* 3.0 32.6 + - - +
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Residues in contact with MET1304 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000G CYS* 3.9 24.5 - - - -
1003G TYR* 6.1 2.7 - - + -
1135G ILE* 5.9 3.1 - - + -
1138G THR* 3.5 16.2 - - + +
1139G LEU* 3.6 42.6 - - + -
1142G LEU* 3.5 26.0 - - + -
1300G ASN 2.9 19.8 + - - +
1301G LEU* 4.1 1.3 - - + +
1303G ASP* 1.3 74.0 - - - +
1305G GLU* 1.3 61.0 + - - +
1307G GLN* 4.2 6.3 - - - +
1308G LEU* 2.8 54.2 + - + +
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Residues in contact with GLU1305 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995G ILE* 5.9 0.2 - - - +
996G PRO* 3.3 37.5 - - - +
1182G ARG* 4.1 25.4 + - - +
1186G ARG* 5.0 5.4 + - - +
1301G LEU* 2.9 25.7 + - + +
1302G ALA* 3.1 13.9 + - - +
1304G MET* 1.3 76.7 - - - +
1306G LEU* 1.3 62.8 + - - +
1308G LEU* 3.8 4.9 - - - +
1309G GLY* 2.9 22.5 + - - -
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Residues in contact with LEU1306 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130G THR* 5.5 5.8 - - + -
1189G GLN* 3.7 40.8 - - + +
1302G ALA 3.0 11.5 + - - +
1303G ASP* 3.2 13.0 + - - +
1305G GLU* 1.3 75.9 - - - +
1307G GLN* 1.3 74.7 + - + +
1309G GLY* 3.1 3.9 + - - -
1310G ALA* 3.0 23.8 + - + +
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Residues in contact with GLN1307 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130G THR* 4.4 13.4 - - + +
1131G ILE* 5.2 0.5 - - - +
1134G HIS* 3.6 21.4 + - - +
1135G ILE* 3.2 34.6 - - + +
1138G THR* 2.6 42.1 + - - +
1303G ASP* 3.0 22.5 + - - +
1304G MET* 3.2 7.4 + - - +
1306G LEU* 1.3 84.4 - - + +
1308G LEU* 1.3 59.5 + - + +
1310G ALA* 3.1 9.4 + - - +
1311G VAL* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU1308 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996G PRO* 5.4 3.6 - - + +
999G ALA* 3.7 19.5 - - + +
1000G CYS* 3.5 40.4 - - + +
1003G TYR* 3.8 17.9 - - + -
1135G ILE* 4.6 13.5 - - + -
1304G MET* 2.8 48.9 + - + +
1305G GLU* 4.0 7.4 - - - +
1307G GLN* 1.3 79.3 - - + +
1309G GLY* 1.3 61.7 + - - +
1311G VAL* 3.6 9.9 - - + +
1312G LYS* 2.8 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLY1309 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999G ALA* 5.6 0.2 - - - -
1305G GLU* 2.9 17.4 + - - -
1306G LEU* 3.1 5.1 + - - -
1308G LEU* 1.3 77.0 - - - +
1310G ALA* 1.3 56.8 + - - +
1312G LYS* 3.3 21.3 + - - +
1313G ARG* 2.9 36.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA1310 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127G ASP* 4.5 17.2 - - + +
1130G THR* 5.1 11.4 - - + -
1131G ILE* 5.2 1.8 - - + -
1306G LEU* 3.0 16.0 + - + +
1307G GLN* 3.1 12.8 + - - +
1309G GLY* 1.3 77.0 - - - +
1311G VAL* 1.3 62.4 + - + +
1313G ARG* 3.1 28.7 + - - +
1314G ILE* 3.0 27.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL1311 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999G ALA 4.8 3.4 - - - +
1002G LYS* 6.3 0.4 - - + -
1003G TYR* 3.9 41.5 - - + +
1096G LEU* 4.9 11.9 - - + -
1131G ILE* 3.6 35.2 - - + -
1135G ILE* 4.3 6.3 - - + -
1307G GLN 2.9 17.6 + - - +
1308G LEU* 3.3 14.8 + - + +
1310G ALA* 1.3 75.7 - - - +
1312G LYS* 1.3 59.0 + - - +
1314G ILE* 3.3 4.6 + - + +
1315G HIS* 2.9 30.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS1312 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995G ILE* 5.1 18.2 - - + +
998G ARG* 6.5 0.4 - - + -
999G ALA* 3.9 23.8 - - + +
1308G LEU 2.8 15.6 + - - +
1309G GLY* 3.6 19.6 + - - +
1310G ALA 3.2 0.2 - - - -
1311G VAL* 1.3 74.0 - - - +
1313G ARG* 1.3 61.5 + - - +
1315G HIS* 3.7 8.2 - - + +
1316G GLY* 2.8 27.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG1313 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123G ARG* 3.3 44.7 - - + +
1127G ASP* 4.2 13.9 + - - -
1193G ASP* 5.1 8.4 + - - -
1309G GLY* 2.9 16.2 + - - +
1310G ALA* 3.1 42.0 + - - +
1312G LYS* 1.3 77.8 - - - +
1314G ILE* 1.3 64.5 + - - +
1315G HIS 3.2 0.2 + - - -
1316G GLY* 3.3 1.6 + - - -
1317G LEU* 3.0 27.9 + - + +
----------------------------------------------------------
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Residues in contact with ILE1314 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096G LEU* 5.1 17.0 - - + -
1100G LEU* 3.6 28.7 - - + +
1123G ARG* 3.6 24.9 - - + +
1127G ASP* 3.5 31.0 - - + +
1128G CYS* 3.8 7.2 - - + +
1131G ILE* 3.5 27.1 - - + -
1310G ALA 3.0 12.8 + - - +
1311G VAL* 3.3 8.3 + - - +
1313G ARG* 1.3 75.1 - - - +
1315G HIS* 1.3 60.0 + - - +
1317G LEU* 3.1 14.7 + - - +
1318G LEU* 2.9 22.0 + - + -
----------------------------------------------------------
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Residues in contact with HIS1315 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002G LYS* 4.8 23.3 - - + +
1096G LEU* 6.1 5.8 - - + +
1311G VAL* 2.9 20.1 + - + +
1312G LYS* 3.7 10.3 - - + +
1313G ARG 3.1 0.2 - - - -
1314G ILE* 1.3 74.9 - - - +
1316G GLY* 1.3 61.7 + - - +
1317G LEU 3.0 1.3 - - - -
1318G LEU* 2.7 57.9 + - + +
1319G LYS* 3.4 4.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY1316 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1312G LYS* 2.8 20.0 + - - -
1313G ARG 3.7 2.0 - - - -
1315G HIS* 1.3 76.5 - - - +
1317G LEU* 1.3 63.4 + - - +
1319G LYS* 3.7 19.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU1317 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1100G LEU* 4.3 10.3 - - + -
1104G ILE* 4.1 13.9 - - - +
1111G PHE* 5.1 11.4 - - + -
1120G ILE* 4.2 22.9 - - + -
1123G ARG* 3.2 48.5 - - + +
1313G ARG* 3.0 16.2 + - + +
1314G ILE* 3.2 10.3 - - - +
1315G HIS 3.0 0.2 - - - -
1316G GLY* 1.3 78.2 - - - +
1318G LEU* 1.3 63.4 + - - +
1319G LYS 3.1 12.2 - - - +
1320G THR* 4.9 1.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU1318 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096G LEU* 6.5 0.9 - - + -
1099G SER* 3.2 46.7 - - - +
1100G LEU* 4.1 12.1 - - + +
1103G ARG* 3.7 20.4 - - + +
1314G ILE* 2.9 7.6 + - + +
1315G HIS* 2.7 51.6 + - + +
1317G LEU* 1.3 71.7 - - - +
1319G LYS* 1.3 59.3 + - - +
1320G THR* 3.1 5.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS1319 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1315G HIS 3.4 4.7 + - - +
1316G GLY* 3.7 15.4 - - - +
1317G LEU* 3.1 12.5 - - - +
1318G LEU* 1.3 75.9 - - - +
1320G THR* 1.3 57.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il