Contacts of the helix formed by residues 1277 - 1319 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1277 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324H VAL* 4.7 15.8 - - + +
327H LEU* 3.5 41.1 - - + -
1270H SER* 3.8 5.9 + - - +
1275H LEU 3.7 0.4 - - - -
1276H SER* 1.3 70.0 - - - +
1278H GLY* 1.3 57.6 + - - +
1279H LEU 3.0 0.4 - - - -
1280H VAL* 2.7 31.0 + - + +
1281H GLY* 2.9 11.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1278 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324H VAL* 5.2 7.2 - - - +
573H PRO 5.5 5.2 - - - -
577H PHE* 5.1 6.3 - - - -
1034H ALA* 4.7 8.1 - - - +
1037H THR* 4.3 19.3 - - - -
1276H SER* 2.6 8.5 + - - -
1277H ALA* 1.3 72.3 - - - +
1279H LEU* 1.3 58.2 + - - -
1281H GLY* 3.4 2.8 + - - -
1282H LEU* 2.9 27.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1279 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1031H TYR* 3.6 36.3 - - + +
1034H ALA* 4.2 21.1 - - + +
1035H LYS* 6.2 2.0 - - + -
1159H VAL* 4.1 24.9 - - + +
1275H LEU* 3.9 19.5 - - + +
1276H SER* 2.5 37.8 + - - +
1278H GLY* 1.3 73.6 - - - -
1280H VAL* 1.3 55.8 + - - +
1282H LEU* 3.2 8.7 + - - +
1283H GLY* 2.9 26.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1280 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 4.6 2.5 - - + -
324H VAL* 6.3 0.2 - - + -
327H LEU* 4.6 1.6 - - + -
1159H VAL* 6.1 0.4 - - - -
1266H SER* 3.5 33.1 - - - +
1267H ILE* 3.7 26.2 - - + -
1270H SER* 3.4 24.2 - - - +
1275H LEU* 3.4 26.0 - - + -
1277H ALA* 2.7 21.5 + - + +
1279H LEU* 1.3 69.5 - - - +
1281H GLY* 1.3 66.2 + - - +
1282H LEU 3.2 0.2 + - - -
1283H GLY* 3.2 2.1 + - - -
1284H LEU* 3.0 33.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1281 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 4.7 0.7 - - - -
324H VAL* 4.3 16.9 - - - +
577H PHE* 2.9 20.6 - - - -
1277H ALA 2.9 12.0 + - - -
1278H GLY* 3.8 2.9 - - - -
1280H VAL* 1.3 75.7 - - - +
1282H LEU* 1.3 56.1 + - - +
1284H LEU* 3.1 17.8 - - - +
1285H THR* 2.9 26.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1282 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577H PHE* 3.3 20.8 - - + -
1030H ASP 3.8 6.1 - - - +
1031H TYR* 3.4 54.1 - - + +
1034H ALA* 3.6 16.4 - - + -
1155H VAL* 3.8 2.9 - - + -
1159H VAL* 3.6 17.7 - - + -
1278H GLY 2.9 13.0 + - - +
1279H LEU* 3.4 8.1 - - - +
1280H VAL 3.1 0.2 - - - -
1281H GLY* 1.3 77.0 - - - +
1283H GLY* 1.3 64.6 + - - +
1285H THR* 3.8 0.5 - - - -
1286H TYR* 3.0 57.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1283 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H ILE* 3.3 17.3 - - - +
1159H VAL* 3.8 25.1 - - - -
1262H ALA* 4.8 4.8 - - - +
1266H SER* 5.4 3.6 - - - -
1279H LEU 2.9 14.7 + - - -
1280H VAL 3.8 2.2 - - - -
1282H LEU* 1.3 76.2 - - - +
1284H LEU* 1.3 57.3 + - - +
1286H TYR* 3.1 2.3 + - - -
1287H ALA* 2.9 24.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1284 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 3.5 39.3 - - + -
323H ILE* 3.6 40.2 - - + -
362H LEU* 5.8 0.7 - - + -
1259H VAL* 6.1 1.1 - - + -
1262H ALA* 5.1 4.0 - - - +
1263H ALA* 4.6 22.2 - - + -
1266H SER* 5.3 1.7 + - - +
1267H ILE* 5.2 1.3 - - + -
1280H VAL* 3.0 25.5 + - + +
1281H GLY* 3.1 20.6 - - - +
1283H GLY* 1.3 77.2 - - - +
1285H THR* 1.3 70.5 + - - +
1287H ALA* 3.1 10.4 + - - +
1288H LEU* 2.9 36.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1285 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 3.3 14.9 - - + +
577H PHE* 3.0 29.0 - - + -
581H SER* 2.7 42.4 + - - +
584H HIS* 4.2 16.6 - - + -
585H ILE* 6.5 0.2 - - + -
1281H GLY 2.9 8.1 + - - -
1284H LEU* 1.3 78.9 - - - +
1286H TYR* 1.3 61.2 + - + +
1288H LEU* 3.3 11.5 + - + +
1289H MET* 2.8 24.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1286 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577H PHE* 4.7 10.5 - + - -
584H HIS* 4.4 15.9 - + - -
1027H VAL* 5.3 7.9 - - + -
1030H ASP* 2.5 44.3 + - - +
1031H TYR* 4.2 1.1 + - + -
1152H ALA* 3.9 13.2 - - + +
1155H VAL* 3.4 42.6 - - + -
1156H ILE* 3.5 20.4 - - + -
1282H LEU* 3.0 37.6 + - + +
1283H GLY* 3.1 2.2 + - - +
1285H THR* 1.3 81.0 - - + +
1287H ALA* 1.3 60.5 + - - +
1289H MET* 3.1 14.5 - - + +
1290H VAL* 2.9 32.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1287 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H ILE* 4.0 5.1 - - + +
1258H VAL* 4.5 6.8 - - + +
1259H VAL* 3.1 40.4 - - + +
1262H ALA* 3.9 16.6 - - + -
1283H GLY 2.9 12.8 + - - +
1284H LEU* 3.1 11.4 + - - +
1286H TYR* 1.3 74.9 - - - +
1288H LEU* 1.3 59.4 + - - +
1290H VAL* 3.2 7.6 + - - +
1291H SER 2.9 24.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1288 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316H GLY* 4.7 8.5 - - - -
320H ILE* 3.8 27.6 - - + -
362H LEU* 3.8 28.3 - - + -
366H LEU* 4.6 14.4 - - + -
370H ARG* 5.0 1.9 + - - -
585H ILE* 4.1 24.5 - - + -
1259H VAL* 3.9 16.8 - - + -
1284H LEU* 2.9 32.8 + - + +
1285H THR* 3.4 10.8 - - + +
1287H ALA* 1.3 74.5 - - - +
1289H MET* 1.3 64.0 + - - +
1291H SER* 3.3 3.9 + - - -
1292H ASN* 2.9 24.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1289 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584H HIS* 3.9 37.0 - - + +
1148H LEU* 3.6 42.0 - - + +
1152H ALA* 4.5 13.2 - - + -
1285H THR 2.8 17.4 + - - +
1286H TYR* 3.1 21.1 - - + +
1288H LEU* 1.3 72.4 - - - +
1290H VAL* 1.3 57.0 + - - +
1292H ASN* 3.1 2.5 + - - -
1293H TYR* 2.9 72.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1290 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1149H CYS* 4.4 8.1 - - - +
1152H ALA* 3.6 23.3 - - + +
1153H LEU* 3.7 31.2 - - + +
1156H ILE* 4.9 5.8 - - + -
1255H GLY* 5.5 3.1 - - - -
1258H VAL* 4.8 18.2 - - + -
1286H TYR 2.9 21.1 + - - +
1287H ALA* 3.2 6.5 + - - +
1289H MET* 1.3 72.1 - - - +
1291H SER* 1.3 68.5 + - - +
1292H ASN 2.9 0.2 + - - -
1293H TYR* 4.4 1.3 - - - +
1294H LEU* 2.8 51.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1291 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366H LEU* 4.6 7.7 - - - +
370H ARG* 4.1 10.9 + - - -
1252H GLU* 3.1 35.5 + - - +
1255H GLY* 3.8 24.0 + - - -
1256H ALA* 4.0 3.6 + - - +
1259H VAL* 3.4 28.9 - - - +
1287H ALA 2.9 7.1 + - - -
1288H LEU* 3.7 5.8 - - - -
1290H VAL* 1.3 75.4 - - - +
1292H ASN* 1.3 62.0 + - - +
1294H LEU* 4.8 2.3 + - - +
1295H ASN 5.0 2.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1292 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370H ARG* 3.9 18.8 - - - +
585H ILE* 5.3 6.2 - - - +
588H THR* 3.5 24.2 - - - -
1252H GLU* 5.2 0.2 - - - +
1288H LEU 2.9 13.0 + - - +
1289H MET* 3.3 9.2 - - - +
1291H SER* 1.3 79.7 - - - +
1293H TYR* 1.3 79.4 + - + +
1294H LEU 3.5 0.9 + - - -
1295H ASN* 4.0 8.1 + - - +
1296H TRP* 4.2 33.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1293 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584H HIS* 3.7 8.7 + - + +
587H VAL* 4.4 1.9 - - - +
588H THR* 3.3 29.1 + - - -
591H PHE* 5.7 3.4 - - + -
1144H ARG* 6.3 4.9 - - + -
1145H SER* 4.1 23.5 - - - +
1148H LEU* 5.2 7.6 - - + -
1149H CYS* 5.5 3.6 - - + +
1289H MET* 2.9 66.3 + - + +
1290H VAL* 5.2 1.1 - - - -
1292H ASN* 1.3 93.5 - - + +
1294H LEU* 1.3 59.7 + - - +
1295H ASN 3.3 2.5 - - - -
1296H TRP* 3.3 41.3 + + - +
1297H MET* 2.9 27.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1294 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1149H CYS* 3.6 19.5 - - - +
1153H LEU* 5.6 0.4 - - + -
1174H CYS* 5.5 4.0 - - - -
1251H MET* 3.6 47.6 - - + +
1254H ILE* 5.6 5.2 - - + -
1255H GLY* 5.5 6.1 - - - +
1290H VAL* 2.8 32.0 + - + +
1291H SER* 5.2 2.7 - - - +
1293H TYR* 1.3 78.0 - - - +
1295H ASN* 1.3 58.2 + - + +
1297H MET* 3.1 36.0 + - + +
1298H VAL* 3.0 30.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1295 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1247H LEU* 6.2 0.2 - - - +
1248H GLU* 2.6 70.5 + - - +
1251H MET* 4.3 13.4 - - + +
1252H GLU* 3.9 21.3 + - - +
1291H SER 5.0 1.7 + - - +
1292H ASN 4.0 7.2 + - - +
1293H TYR 3.3 0.4 - - - -
1294H LEU* 1.3 80.1 - - + +
1296H TRP* 1.3 71.0 + - + +
1298H VAL* 3.3 8.8 + - - +
1299H ARG* 2.9 20.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TRP1296 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588H THR* 3.5 31.6 - - - -
589H PRO* 5.4 0.7 - - + -
591H PHE* 4.6 11.4 - - + -
592H LEU* 4.8 22.7 - - + -
1144H ARG* 6.4 2.2 - - - -
1145H SER* 3.9 13.2 - - - +
1248H GLU* 5.3 1.5 + - - -
1292H ASN* 4.2 23.6 + - - +
1293H TYR* 3.3 42.9 + + - +
1295H ASN* 1.3 80.0 - - + +
1297H MET* 1.3 61.9 + - - +
1299H ARG* 3.2 36.7 - - - +
1300H ASN* 2.8 38.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1297 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142H LEU* 5.0 5.0 - - + +
1145H SER* 3.7 15.6 - - - +
1146H THR* 3.4 43.5 - - - +
1149H CYS* 3.8 16.8 - - - -
1150H VAL* 5.6 1.8 - - - -
1174H CYS* 6.2 3.4 - - - -
1178H GLN* 6.0 1.3 - - - +
1293H TYR 2.9 14.2 + - - +
1294H LEU* 3.1 37.6 + - + +
1296H TRP* 1.3 76.2 - - - +
1298H VAL* 1.3 67.9 + - + +
1300H ASN* 3.8 2.3 - - - +
1301H LEU* 2.9 30.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1298 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174H CYS* 5.5 0.4 - - - -
1178H GLN* 4.3 16.8 - - + +
1247H LEU* 3.9 27.8 - - + -
1251H MET* 3.7 32.3 - - + -
1294H LEU* 3.0 13.9 + - + +
1295H ASN* 3.7 12.1 - - - +
1297H MET* 1.3 88.1 - - + +
1299H ARG* 1.3 64.8 + - - +
1301H LEU* 3.1 10.0 + - + +
1302H ALA* 2.9 22.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1299 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377H TYR* 5.6 7.0 - - - -
592H LEU* 5.7 8.5 - - - +
1244H ASN* 4.7 23.1 - - - +
1245H ARG* 4.8 4.7 - - - +
1248H GLU* 3.9 26.3 + - - +
1295H ASN* 2.9 12.3 + - - +
1296H TRP* 3.2 50.0 - - - +
1298H VAL* 1.3 78.2 - - - +
1300H ASN* 1.3 66.9 + - - +
1302H ALA* 3.2 9.2 + - + +
1303H ASP* 2.9 48.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1300 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138H THR* 4.0 7.9 - - + +
1141H CYS* 3.5 29.2 - - + +
1142H LEU* 3.5 22.8 - - + +
1145H SER* 3.4 20.6 + - - -
1296H TRP* 2.8 30.1 + - - +
1297H MET 3.9 1.6 - - - +
1299H ARG* 1.3 83.6 + - - +
1301H LEU* 1.3 61.1 + - - +
1303H ASP* 4.4 10.3 - - - +
1304H MET* 2.9 33.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1301 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142H LEU* 3.5 20.3 - - + +
1182H ARG* 4.4 25.1 - - - +
1297H MET* 2.9 16.6 + - + +
1298H VAL* 3.1 13.7 + - + +
1300H ASN* 1.3 77.6 - - - +
1302H ALA* 1.3 61.1 + - - +
1304H MET* 3.8 1.2 - - + -
1305H GLU* 2.9 41.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1302 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1181H PHE* 5.7 9.4 - - + -
1182H ARG* 6.3 2.2 - - + +
1185H SER* 6.2 0.4 - - - +
1298H VAL* 2.9 14.4 + - + +
1299H ARG* 3.5 11.7 - - + +
1301H LEU* 1.3 81.2 - - + +
1303H ASP* 1.3 67.7 + - - +
1305H GLU* 3.1 9.3 + - - +
1306H LEU* 3.0 21.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1303 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138H THR* 4.2 14.4 - - + +
1244H ASN* 5.7 2.3 + - - -
1299H ARG* 2.9 39.7 + - - +
1300H ASN* 4.1 10.2 - - - +
1302H ALA* 1.3 78.9 - - - +
1304H MET* 1.3 58.4 + - - +
1306H LEU* 3.2 12.9 + - - +
1307H GLN* 3.0 31.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1304 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000H CYS* 3.9 24.2 - - + -
1003H TYR* 6.1 2.9 - - + -
1135H ILE* 5.9 3.1 - - + -
1138H THR* 3.5 16.7 - - + +
1139H LEU* 3.6 43.1 - - + -
1142H LEU* 3.5 25.8 - - + -
1300H ASN 2.9 18.4 + - - +
1301H LEU* 4.1 0.9 - - + +
1303H ASP* 1.3 74.8 - - - +
1305H GLU* 1.3 61.1 + - - +
1307H GLN* 4.2 6.3 - - - +
1308H LEU* 2.8 53.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1305 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995H ILE* 5.9 0.5 - - - +
996H PRO* 3.3 38.8 - - - +
1182H ARG* 4.1 24.8 + - - +
1186H ARG* 5.0 5.3 + - + +
1301H LEU* 2.9 25.5 + - + +
1302H ALA* 3.1 13.7 + - - +
1304H MET* 1.3 75.8 - - - +
1306H LEU* 1.3 62.3 + - - +
1308H LEU* 3.8 5.1 - - - +
1309H GLY* 2.9 22.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1306 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130H THR* 5.5 6.1 - - + -
1189H GLN* 3.7 41.1 - - + +
1302H ALA 3.0 12.4 + - - +
1303H ASP* 3.2 13.7 + - - +
1305H GLU* 1.3 76.9 - - - +
1307H GLN* 1.3 74.0 + - + +
1309H GLY* 3.1 3.5 + - - -
1310H ALA* 3.0 23.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1307 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130H THR* 4.4 14.6 - - + +
1131H ILE* 5.2 0.5 - - - +
1134H HIS* 3.6 20.8 + - - +
1135H ILE* 3.2 34.3 - - + +
1138H THR* 2.6 43.2 + - - +
1303H ASP* 3.0 21.5 + - - +
1304H MET* 3.2 6.7 + - - +
1306H LEU* 1.3 84.2 - - + +
1308H LEU* 1.3 59.5 + - + +
1310H ALA* 3.1 8.6 + - - +
1311H VAL* 2.9 30.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1308 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996H PRO* 5.4 4.5 - - + +
999H ALA* 3.7 20.7 - - + +
1000H CYS* 3.5 40.2 - - + +
1003H TYR* 3.8 18.2 - - + -
1135H ILE* 4.6 13.9 - - + -
1304H MET* 2.8 49.3 + - + +
1305H GLU* 4.0 6.7 - - - +
1307H GLN* 1.3 79.5 - - + +
1309H GLY* 1.3 60.7 + - - +
1311H VAL* 3.6 9.9 - - + +
1312H LYS* 2.8 28.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1309 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999H ALA* 5.6 0.2 - - - -
1305H GLU* 2.9 17.0 + - - -
1306H LEU* 3.1 4.7 + - - -
1308H LEU* 1.3 77.0 - - - +
1310H ALA* 1.3 55.5 + - - +
1312H LYS* 3.3 21.7 + - - +
1313H ARG* 2.9 36.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1310 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127H ASP* 4.5 16.9 - - + +
1130H THR* 5.1 12.3 - - + -
1131H ILE* 5.2 2.0 - - + -
1306H LEU* 3.0 15.6 + - + +
1307H GLN* 3.3 11.9 - - - +
1309H GLY* 1.3 77.1 - - - +
1311H VAL* 1.3 62.2 + - + +
1313H ARG* 3.1 27.1 + - - +
1314H ILE* 3.0 27.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1311 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999H ALA 4.8 3.4 - - - +
1002H LYS* 5.9 0.9 - - + -
1003H TYR* 3.9 41.3 - - + +
1096H LEU* 4.9 12.1 - - + +
1131H ILE* 3.6 35.0 - - + -
1135H ILE* 4.3 6.3 - - + -
1307H GLN 2.9 18.4 + - - +
1308H LEU* 3.3 15.5 + - + +
1310H ALA* 1.3 75.1 - - - +
1312H LYS* 1.3 57.6 + - - +
1314H ILE* 3.3 4.0 + - - +
1315H HIS* 2.9 29.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1312 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995H ILE* 5.1 16.6 - - + +
998H ARG* 6.5 0.4 - - + -
999H ALA* 3.9 23.8 - - + +
1308H LEU 2.8 15.1 + - - +
1309H GLY* 3.6 19.5 + - - +
1311H VAL* 1.3 73.6 - - - +
1313H ARG* 1.3 60.8 + - - +
1315H HIS* 3.7 9.1 - - + +
1316H GLY* 2.8 28.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1313 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123H ARG* 3.3 46.5 - - + +
1127H ASP* 4.2 14.9 + - - -
1193H ASP* 5.1 8.7 + - - -
1309H GLY* 2.9 17.0 + - - +
1310H ALA* 3.1 42.1 + - - +
1312H LYS* 1.3 78.0 - - - +
1314H ILE* 1.3 64.4 + - - +
1316H GLY* 3.3 1.7 + - - -
1317H LEU* 3.0 28.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1314 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096H LEU* 5.1 17.7 - - + +
1100H LEU* 3.6 29.2 - - + +
1123H ARG* 3.6 25.1 - - + +
1127H ASP* 3.5 30.7 - - + +
1128H CYS* 3.8 7.0 - - + +
1131H ILE* 3.5 27.4 - - + -
1310H ALA 3.0 12.7 + - - +
1311H VAL* 3.7 8.1 - - - +
1313H ARG* 1.3 74.7 - - - +
1315H HIS* 1.3 60.3 + - + +
1317H LEU* 3.1 12.5 + - - +
1318H LEU* 2.9 22.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1315 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002H LYS* 4.8 23.0 - - + +
1096H LEU* 6.1 5.7 - - + +
1311H VAL* 2.9 20.7 + - + +
1312H LYS* 3.7 9.9 - - + +
1313H ARG 3.1 0.2 - - - -
1314H ILE* 1.3 75.2 - - + +
1316H GLY* 1.3 61.1 + - - +
1317H LEU 3.0 1.3 - - - -
1318H LEU* 2.7 57.5 + - + +
1319H LYS* 3.4 4.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1316 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1312H LYS* 2.8 20.2 + - - -
1313H ARG* 3.7 2.2 - - - -
1315H HIS* 1.3 76.7 - - - +
1317H LEU* 1.3 62.4 + - - +
1319H LYS* 3.7 18.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1317 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1100H LEU* 4.3 9.9 - - + -
1103H ARG* 5.4 0.2 - - - +
1104H ILE* 4.1 14.0 - - + +
1111H PHE* 5.1 11.4 - - + -
1120H ILE* 4.2 23.1 - - + -
1123H ARG* 3.2 48.5 - - + +
1313H ARG* 3.0 16.5 + - + +
1314H ILE* 3.2 9.9 - - - +
1315H HIS 3.0 0.2 - - - -
1316H GLY* 1.3 77.5 - - - +
1318H LEU* 1.3 63.1 + - - +
1319H LYS 3.1 13.5 - - - +
1320H THR* 4.9 1.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1318 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096H LEU* 6.5 1.1 - - + -
1099H SER* 3.2 46.9 - - - +
1100H LEU* 4.1 12.1 - - + +
1103H ARG* 3.7 21.4 - - + +
1314H ILE* 2.9 7.4 + - + +
1315H HIS* 2.7 52.9 + - + +
1317H LEU* 1.3 72.5 - - - +
1319H LYS* 1.3 59.3 + - - +
1320H THR* 3.1 5.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1319 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1315H HIS 3.4 4.5 + - - +
1316H GLY* 3.7 15.9 - - - +
1317H LEU* 3.1 12.6 - - - +
1318H LEU* 1.3 75.8 - - - +
1320H THR* 1.3 58.5 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il