Contacts of the helix formed by residues 354 - 401 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 354 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94H LEU* 3.8 22.0 - - + -
326H HIS* 2.9 44.1 + - - +
353H ALA* 1.3 70.8 - - - +
355H ALA* 1.3 66.1 + - - +
356H TYR 3.3 1.6 - - - -
357H VAL* 3.1 8.3 - - + +
358H LEU* 3.1 25.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 355 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 4.7 16.4 - - + +
326H HIS* 4.3 20.6 - - + -
327H LEU* 5.4 2.9 - - + +
353H ALA* 3.5 1.8 - - + +
354H ASN* 1.3 80.2 + - - +
356H TYR* 1.3 61.1 + - + +
358H LEU* 3.3 9.6 + - - +
359H ALA* 2.9 31.2 + - - +
1267H ILE* 4.4 24.2 - - + +
1271H LEU* 5.7 2.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 356 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353H ALA* 3.5 37.5 - - + +
354H ASN 3.3 0.2 - - - -
355H ALA* 1.3 78.4 - - + +
357H VAL* 1.3 66.3 + - + +
359H ALA* 3.1 7.0 + - - +
360H VAL* 3.0 24.6 + - - +
1264H VAL* 4.6 24.8 - - + +
1267H ILE* 4.1 21.8 - - + -
1268H SER* 3.6 30.6 - - - -
1271H LEU* 4.0 14.4 - - + +
1272H HIS* 3.7 16.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 357 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90H ALA* 4.2 26.4 - - + +
93H ILE* 5.7 7.2 - - + -
94H LEU* 3.7 43.3 - - + +
353H ALA 4.8 0.4 - - - +
354H ASN* 3.1 22.9 - - + +
356H TYR* 1.3 80.0 - - + +
358H LEU* 1.3 56.9 + - + +
360H VAL* 3.2 12.8 - - + +
361H LEU* 2.8 29.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 358 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318H LEU 5.9 0.2 - - - +
319H CYS* 3.2 56.4 - - - +
322H GLY* 4.1 3.8 - - - -
323H ILE* 3.6 19.3 - - + +
326H HIS* 3.8 31.4 - - + +
354H ASN* 3.1 20.2 + - - +
355H ALA* 3.5 4.5 - - - +
356H TYR 3.1 0.4 - - - -
357H VAL* 1.3 80.4 - - + +
359H ALA* 1.3 55.5 + - - +
361H LEU* 3.2 16.8 - - + +
362H LEU 3.0 22.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 359 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319H CYS* 4.0 9.9 - - - -
323H ILE* 4.4 11.0 - - + -
355H ALA 2.9 16.8 + - - +
356H TYR* 3.6 5.6 - - - +
358H LEU* 1.3 75.8 - - - +
360H VAL* 1.3 60.7 + - - +
362H LEU* 3.0 8.2 + - + +
363H PHE* 2.9 23.4 + - - +
1260H LEU* 4.5 6.5 - - + +
1263H ALA* 4.0 29.0 - - + +
1264H VAL* 5.4 4.3 - - + +
1267H ILE* 5.5 4.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 360 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90H ALA* 6.2 1.1 - - + -
356H TYR 3.0 10.1 + - - +
357H VAL* 3.2 30.7 - - + +
359H ALA* 1.3 73.6 - - - +
361H LEU* 1.3 59.9 + - - +
363H PHE* 3.1 18.6 - - + +
364H LEU* 2.9 37.0 + - + +
1260H LEU* 4.0 23.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 361 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83H PHE* 4.3 29.4 - - + -
87H CYS* 5.4 5.8 - - - -
357H VAL 2.8 16.3 + - - +
358H LEU* 3.2 19.3 - - + +
360H VAL* 1.3 75.4 - - - +
362H LEU* 1.3 60.3 + - - +
364H LEU* 3.3 13.2 + - + +
365H ALA* 2.9 29.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 362 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315H ALA 4.4 2.7 - - - +
316H GLY* 3.6 32.5 - - - +
319H CYS* 3.3 35.4 - - + +
320H ILE* 5.0 3.8 - - + -
323H ILE* 5.2 3.6 - - + -
358H LEU 3.0 6.7 + - - -
359H ALA* 3.0 9.6 + - - +
361H LEU* 1.3 76.3 - - - +
363H PHE* 1.3 57.7 + - - +
365H ALA* 3.2 11.5 + - + +
366H LEU* 2.9 48.0 + - + +
1259H VAL* 4.8 6.5 - - + -
1284H LEU* 5.8 0.7 - - + -
1288H LEU* 3.8 29.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 363 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359H ALA 2.9 7.6 + - - +
360H VAL* 3.1 24.9 - - + +
361H LEU 3.1 0.2 - - - -
362H LEU* 1.3 76.3 - - - +
364H LEU* 1.3 71.0 + - + +
366H LEU* 3.2 9.2 + - + +
367H LEU* 2.9 54.6 + - + +
1256H ALA* 3.1 46.3 - - + +
1257H CYS* 3.7 14.6 - - - -
1259H VAL* 5.6 4.2 - - + +
1260H LEU* 3.4 37.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 364 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83H PHE* 5.3 14.1 - - + -
86H VAL* 4.1 26.2 - - + -
360H VAL* 2.9 26.8 + - + +
361H LEU* 3.7 19.7 - - + +
363H PHE* 1.3 80.9 - - + +
365H ALA* 1.3 63.5 + - - +
367H LEU* 3.2 23.6 + - + +
368H LEU* 3.0 30.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 365 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83H PHE* 6.1 1.5 - - - -
312H LEU* 3.7 30.2 - - + +
313H GLY* 6.1 1.6 - - - -
315H ALA* 6.1 4.0 - - + +
361H LEU* 2.9 17.4 + - + +
362H LEU* 3.3 20.9 - - + +
364H LEU* 1.3 78.3 - - - +
366H LEU* 1.3 57.7 + - + +
368H LEU* 3.4 2.2 + - - -
369H GLN* 2.8 29.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 366 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313H GLY* 5.0 11.2 - - - +
316H GLY* 6.0 0.4 - - - -
362H LEU* 2.9 40.2 + - + +
363H PHE* 3.8 5.8 - - + +
365H ALA* 1.3 73.3 - - + +
367H LEU* 1.3 66.1 + - - +
369H GLN* 3.5 9.6 - - + -
370H ARG* 3.0 58.2 + - - +
1252H GLU* 5.4 0.7 - - - +
1256H ALA* 5.1 12.8 - - + -
1259H VAL* 4.4 28.7 - - + -
1288H LEU* 4.6 14.8 - - + -
1291H SER* 4.6 9.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 367 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 2.9 50.1 + - + +
364H LEU* 3.3 23.1 - - + +
366H LEU* 1.3 77.3 - - - +
368H LEU* 1.3 66.1 + - + +
370H ARG* 4.0 1.2 - - - +
371H THR* 3.0 24.6 + - - +
1253H TYR* 3.9 35.5 - - + -
1256H ALA* 4.1 17.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 368 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79H PHE* 6.2 6.7 - - + -
83H PHE* 4.7 23.1 - - + -
312H LEU* 4.0 12.6 - - + -
364H LEU* 3.0 17.1 + - + +
365H ALA* 3.9 4.0 - - - +
367H LEU* 1.3 79.1 - - + +
369H GLN* 1.3 63.6 + - - +
371H THR* 3.1 12.8 - - + +
372H PHE* 2.9 55.7 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 369 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309H ALA* 2.2 50.5 + - - +
310H ASP* 3.5 3.1 + - - -
312H LEU* 3.6 7.4 - - + +
313H GLY* 2.8 27.4 - - - +
365H ALA 2.8 19.6 + - - +
366H LEU* 3.2 13.9 - - + +
367H LEU 3.1 0.2 - - - -
368H LEU* 1.3 77.6 - - - +
370H ARG* 1.3 83.1 + - - +
372H PHE* 3.3 5.0 + - - +
373H LEU* 2.9 33.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 370 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313H GLY* 5.8 0.6 - - - -
366H LEU* 3.0 42.6 + - - +
367H LEU 4.4 0.7 - - - +
369H GLN* 1.3 94.8 - - - +
371H THR* 1.3 60.9 + - - +
372H PHE 3.1 1.6 - - - -
373H LEU* 3.5 27.5 - - + +
374H GLN* 2.9 34.6 + - + +
1252H GLU* 2.9 49.6 + - + +
1253H TYR* 5.5 2.2 - - + -
1288H LEU 5.0 1.6 + - - -
1291H SER* 4.1 8.5 + - - -
1292H ASN* 3.9 36.5 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 371 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY* 3.8 24.4 + - - +
229H THR* 5.2 2.1 - - - -
367H LEU 3.0 16.9 + - - +
368H LEU* 3.1 32.1 - - + +
370H ARG* 1.3 76.3 - - - +
372H PHE* 1.3 73.1 + - + +
374H GLN* 3.8 10.0 - - - +
375H ALA* 3.6 15.9 + - - +
1249H VAL* 6.0 1.2 - - - +
1253H TYR* 3.7 22.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 372 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305H PHE* 4.0 12.0 - + + +
308H LEU* 3.6 31.6 - - + -
309H ALA* 3.8 17.3 - - + -
312H LEU* 4.8 5.8 - - + -
368H LEU* 2.9 48.8 + - + +
369H GLN* 3.5 5.2 - - - +
371H THR* 1.3 90.2 - - + +
373H LEU* 1.3 65.4 + - - +
374H GLN 3.1 0.9 - - - -
375H ALA* 3.1 10.1 + - + +
376H SER* 2.9 23.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 373 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306H ARG* 3.9 25.3 + - - +
309H ALA* 3.6 12.1 - - + -
310H ASP* 4.8 4.5 - - + +
369H GLN* 2.9 30.2 + - - +
370H ARG* 3.5 48.0 - - + +
372H PHE* 1.3 75.0 - - - +
374H GLN* 1.3 63.5 + - - +
376H SER* 3.4 5.4 + - - -
377H TYR* 2.9 31.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 374 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY 4.3 11.4 - - - +
230H TYR* 4.4 6.2 + - + -
370H ARG* 2.9 22.8 + - + +
371H THR* 3.8 9.0 - - - +
373H LEU* 1.3 82.6 - - - +
375H ALA* 1.3 57.4 + - - +
377H TYR* 3.8 4.6 - - - +
378H TYR* 2.9 33.9 + - - +
1245H ARG* 3.3 40.5 + - - +
1248H GLU* 3.0 39.6 - - - +
1249H VAL* 3.7 19.0 - - + +
1252H GLU* 6.4 1.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 375 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227H LYS 5.9 3.1 - - - +
228H GLY* 5.6 6.5 + - - -
230H TYR* 5.7 0.4 - - - -
305H PHE* 3.4 27.1 - - + -
371H THR 3.6 10.6 + - - +
372H PHE* 3.1 14.2 + - + +
374H GLN* 1.3 78.3 - - - +
376H SER* 1.3 62.6 + - - +
378H TYR* 4.1 2.9 - - - +
379H VAL* 3.0 31.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 376 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302H SER* 2.1 51.2 + - - -
305H PHE* 3.5 11.1 - - - -
306H ARG* 2.9 47.0 + - - +
372H PHE 2.9 9.8 + - - -
373H LEU* 3.5 8.5 - - - -
375H ALA* 1.3 76.9 - - - +
377H TYR* 1.3 62.5 + - - +
380H ALA* 3.4 5.0 + - - +
436H PRO* 4.3 1.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 377 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306H ARG* 4.1 17.0 - - - +
373H LEU 2.9 20.8 + - - +
374H GLN* 3.9 7.4 - - - +
376H SER* 1.3 73.3 - - - +
378H TYR* 1.3 57.6 + - - +
380H ALA* 3.2 6.1 + - + +
381H ILE* 3.0 50.5 + - + +
433H PHE* 4.6 33.2 - + + -
1244H ASN* 5.0 4.0 + - - -
1245H ARG* 3.2 50.3 + - - +
1299H ARG* 5.6 6.2 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 378 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218H LEU* 4.9 13.1 - - + +
219H GLN* 3.3 32.5 + - - +
227H LYS 5.9 0.2 - - - -
230H TYR* 3.1 32.5 - + - +
232H TRP* 5.6 5.1 - + - -
374H GLN 2.9 18.8 + - - +
375H ALA* 4.1 2.9 - - - +
377H TYR* 1.3 73.7 - - - +
379H VAL* 1.3 74.3 + - + +
381H ILE* 3.1 5.9 - - + +
382H GLU* 2.9 38.2 + - + +
1238H LEU* 4.4 19.8 + - + +
1241H THR* 3.5 33.0 - - + -
1242H ALA* 5.0 5.2 - - + -
1245H ARG* 4.3 6.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 379 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298H ARG* 3.5 43.7 - - + +
301H LEU* 3.8 11.9 - - + -
302H SER* 3.5 13.5 - - - -
305H PHE* 3.7 23.1 - - + -
375H ALA* 3.0 24.2 + - + +
378H TYR* 1.3 81.7 - - + +
380H ALA* 1.3 57.7 + - - +
382H GLU* 3.3 7.6 + - - +
383H THR* 2.9 31.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 380 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299H LEU* 5.2 3.8 - - + -
302H SER* 3.5 17.7 + - - +
376H SER 3.4 2.9 + - - +
377H TYR* 3.2 8.9 + - + +
378H TYR 3.1 0.8 - - - -
379H VAL* 1.3 76.4 - - - +
381H ILE* 1.3 60.5 + - - +
383H THR* 2.0 33.8 + - - +
384H GLY* 2.9 9.0 + - - -
432H PHE 3.4 20.6 - - - +
433H PHE* 4.3 5.4 - - - +
436H PRO* 4.0 19.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 381 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377H TYR* 3.0 36.8 + - + +
378H TYR* 3.1 28.9 - - + +
380H ALA* 1.3 75.4 - - - +
382H GLU* 1.3 62.7 + - - +
384H GLY* 3.2 2.4 + - - -
385H ILE* 3.0 32.6 + - + +
433H PHE* 3.3 37.3 - - + +
1237H SER* 5.7 1.1 - - - +
1238H LEU* 5.9 0.7 - - + -
1240H LEU* 6.5 0.7 - - + -
1241H THR* 3.2 49.1 - - + +
1244H ASN* 6.2 0.4 - - - +
1245H ARG* 5.1 1.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 382 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218H LEU* 6.2 3.4 - - + -
298H ARG* 3.1 42.9 + - - -
378H TYR* 2.9 40.8 + - + +
379H VAL* 3.4 5.6 - - - +
381H ILE* 1.3 78.6 - - - +
383H THR* 1.3 59.8 + - - +
385H ILE* 3.1 11.0 + - + +
386H ASN* 2.4 59.5 + - - +
1238H LEU* 5.1 11.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 383 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295H PHE* 3.2 34.6 - - + -
298H ARG* 3.4 29.8 - - + -
299H LEU* 3.8 18.9 - - + +
302H SER* 5.6 0.2 - - - -
379H VAL* 2.9 31.3 + - + +
380H ALA* 2.0 32.1 + - - -
382H GLU* 1.3 78.4 + - - +
384H GLY* 1.3 64.7 + - - +
386H ASN* 3.1 5.7 + - - +
387H LEU* 3.0 19.9 + - - +
432H PHE* 3.8 7.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 384 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380H ALA 2.9 6.6 + - - -
381H ILE 3.2 4.0 + - - -
383H THR* 1.3 83.3 + - - +
385H ILE* 1.3 59.2 + - - +
387H LEU* 3.4 4.9 + - - +
388H ARG* 2.9 31.1 + - - +
429H MET* 4.7 13.7 - - - +
432H PHE* 4.4 16.2 - - - -
433H PHE* 4.7 9.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 385 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381H ILE* 3.0 23.0 + - + +
382H GLU* 3.1 7.2 + - + +
384H GLY* 1.3 77.5 - - - +
386H ASN* 1.3 65.4 + - - +
388H ARG* 3.2 24.1 + - - +
389H GLY* 3.0 18.9 + - - -
429H MET* 4.5 9.0 - - + -
433H PHE* 5.5 0.4 - - + -
1234H ASN* 3.3 40.7 - - + +
1237H SER* 3.1 26.9 - - - +
1238H LEU* 3.9 27.8 - - + -
1241H THR* 5.4 0.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 386 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
256H ALA 5.4 3.5 - - - +
257H MET* 5.6 2.6 - - - -
258H ARG* 5.4 4.8 + - - +
261H THR* 4.9 18.0 - - - -
295H PHE* 4.6 10.3 - - + -
298H ARG* 4.5 9.3 - - - +
382H GLU* 2.4 47.8 + - - +
383H THR* 3.6 7.5 - - - +
385H ILE* 1.3 79.9 - - - +
387H LEU* 1.3 64.5 + - - +
389H GLY* 3.3 2.1 + - - -
390H ALA* 2.9 24.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 387 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291H LEU* 3.7 33.2 - - + -
295H PHE* 4.8 16.0 - - + -
383H THR 3.0 16.2 + - - +
384H GLY* 3.9 4.9 - - - +
386H ASN* 1.3 75.6 - - - +
388H ARG* 1.3 57.8 + - - +
390H ALA* 3.3 7.6 + - + -
391H ILE* 2.9 54.8 + - + +
428H LEU* 4.9 13.5 - - + -
432H PHE* 3.4 39.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 388 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384H GLY 2.9 17.6 + - - +
385H ILE* 3.4 15.1 - - - +
387H LEU* 1.3 75.3 - - - +
389H GLY* 1.3 62.0 + - - +
391H ILE* 3.1 10.0 - - - +
392H GLN* 2.9 55.5 + - - +
425H THR* 4.4 18.4 - - - +
426H ASN* 5.2 6.2 + - - -
429H MET* 3.4 35.0 - - + +
1233H ASN* 3.5 23.8 + - - +
1234H ASN* 3.0 42.2 + - - +
1237H SER* 3.4 21.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 389 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258H ARG* 5.1 9.4 - - - -
385H ILE 3.0 13.3 + - - -
386H ASN* 3.3 2.9 + - - -
388H ARG* 1.3 76.6 - - - +
390H ALA* 1.3 62.5 + - - +
392H GLN* 3.3 1.9 + - - +
393H THR* 2.9 28.8 + - - -
1230H THR* 3.6 26.5 - - - +
1234H ASN* 4.2 7.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 390 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258H ARG* 5.6 1.3 - - - +
261H THR* 4.7 17.6 - - - +
262H ASN* 4.9 5.7 - - - +
265H ARG* 4.7 19.9 - - + +
386H ASN 2.9 17.4 + - - +
387H LEU* 3.8 9.9 - - + +
389H GLY* 1.3 75.7 - - - +
391H ILE* 1.3 60.7 + - + +
393H THR* 3.2 8.7 + - - -
394H LYS* 2.9 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 391 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291H LEU* 5.8 1.6 - - + -
387H LEU* 2.9 46.3 + - + +
388H ARG* 3.1 16.6 - - - +
390H ALA* 1.3 74.4 - - + +
392H GLN* 1.3 61.6 + - - +
394H LYS* 3.9 8.2 - - + +
395H ILE* 2.8 42.6 + - + +
424H ASP* 4.4 2.9 - - - +
425H THR* 3.6 38.4 - - + +
428H LEU* 4.2 22.0 - - + -
610H LEU* 5.6 4.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 392 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388H ARG* 2.9 49.3 + - - +
389H GLY 3.7 3.8 - - - +
391H ILE* 1.3 76.0 - - - +
393H THR* 1.3 61.3 + - - +
395H ILE* 3.9 5.1 - - - +
396H TYR* 2.9 26.9 + - - +
421H VAL* 3.8 28.1 + - + +
425H THR* 4.3 15.9 + - + -
1199H LEU* 4.3 22.2 - - - +
1203H PHE* 4.9 9.6 - - + -
1226H LEU* 4.4 3.7 - - + +
1230H THR* 3.3 32.6 + - - +
1233H ASN* 4.7 1.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 393 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258H ARG* 4.4 10.8 + - - +
262H ASN* 4.0 21.1 - - + -
389H GLY 2.9 16.5 + - - -
390H ALA* 3.2 11.7 + - - -
392H GLN* 1.3 76.8 - - - +
394H LYS* 1.3 59.6 + - - +
396H TYR* 3.3 7.8 + - - +
397H ASN* 2.9 28.6 + - + +
1226H LEU* 5.3 3.8 - - - +
1227H LEU* 4.4 26.6 - - + +
1230H THR* 5.3 5.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 394 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H ARG* 4.9 20.7 + - - +
266H LEU* 6.1 1.3 - - - +
269H ALA* 5.0 14.4 - - - +
287H ILE* 6.3 2.0 - - - +
290H ALA* 6.0 3.4 - - - +
390H ALA 2.9 16.5 + - - +
391H ILE* 3.9 9.0 - - + +
393H THR* 1.3 74.4 - - - +
395H ILE* 1.3 66.9 + - + +
397H ASN* 3.2 8.8 + - + +
398H LYS* 2.9 22.6 + - - +
614H LEU* 4.5 22.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 395 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391H ILE* 2.8 34.7 + - + +
392H GLN* 3.9 3.6 - - - +
394H LYS* 1.3 72.7 - - + +
396H TYR* 1.3 58.7 + - - +
398H LYS* 3.1 9.8 + - - +
399H ILE* 2.9 41.4 + - + +
417H ILE 5.3 1.8 - - - +
420H LEU* 3.7 34.1 - - + -
421H VAL* 4.7 19.7 - - + -
424H ASP* 5.0 0.4 - - - +
425H THR* 4.9 6.7 - - + -
610H LEU* 4.2 14.6 - - + -
613H PHE* 4.4 10.1 - - + -
614H LEU* 4.8 17.5 - - + -
1203H PHE* 6.5 0.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 396 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN 2.9 19.4 + - - +
393H THR* 3.6 5.8 - - + +
395H ILE* 1.3 77.7 - - - +
397H ASN* 1.3 59.6 + - - +
399H ILE* 3.2 11.2 + - + +
400H MET* 2.9 36.6 + - + +
1202H HIS* 3.0 27.5 + + - -
1203H PHE* 4.1 12.3 - + + -
1206H THR* 3.3 37.4 + - + +
1222H PHE* 3.1 22.7 + - - +
1223H GLN* 3.6 39.0 - - + -
1226H LEU* 3.3 26.5 - - + -
1227H LEU* 5.8 2.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 397 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393H THR* 2.9 15.2 + - + +
394H LYS* 3.2 12.5 + - + +
396H TYR* 1.3 80.7 - - - +
398H LYS* 1.3 62.2 + - - +
400H MET* 3.1 8.8 + - - +
401H HIS* 2.9 47.1 + - - -
1223H GLN* 4.7 10.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 398 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394H LYS 2.9 13.1 + - - +
395H ILE* 3.1 12.1 + - - +
397H ASN* 1.3 76.0 - - - +
399H ILE* 1.3 51.8 + - - +
401H HIS* 2.9 8.0 + - - +
402H LEU* 2.7 49.5 + - + +
613H PHE* 4.0 21.5 - - + +
614H LEU* 3.4 38.8 - - + +
616H SER* 3.3 33.1 - - - +
617H ALA 3.8 1.4 + - - -
618H GLU* 3.2 42.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 399 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395H ILE* 2.9 27.2 + - + +
396H TYR* 3.3 15.9 - - + +
398H LYS* 1.3 75.3 - - - +
400H MET* 1.3 58.4 + - - +
402H LEU* 2.8 32.6 + - + +
417H ILE* 3.5 19.1 - - + -
613H PHE* 3.4 32.5 - - + -
1203H PHE* 6.5 0.9 - - + -
1206H THR* 3.6 28.7 - - + -
1207H VAL* 4.1 17.5 - - + -
1210H LEU* 3.6 19.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 400 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 2.9 41.7 + - + +
397H ASN* 3.1 12.3 + - - +
399H ILE* 1.3 76.1 - - - +
401H HIS* 1.3 66.4 + - + +
402H LEU 3.8 0.2 + - - -
619H ILE* 5.9 0.3 - - - +
1206H THR* 4.9 7.9 - - + -
1210H LEU* 4.5 11.9 - - + -
1213H ILE* 4.2 19.1 - - + -
1214H ARG* 4.6 24.6 + - - +
1219H GLU* 3.1 56.8 - - + +
1222H PHE* 4.9 0.9 - - + -
1223H GLN* 4.0 13.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 401 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397H ASN* 2.9 34.0 + - - +
398H LYS* 2.9 10.4 + - - +
400H MET* 1.3 92.1 - - + +
402H LEU* 1.3 60.7 + - - +
618H GLU* 3.0 55.1 + - + +
619H ILE* 3.1 15.8 + - - +
1219H GLU* 4.9 9.8 + - - -
1223H GLN* 5.8 1.0 + - - -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il