Contacts of the helix formed by residues 463 - 505 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 463 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461H LEU 2.5 10.8 + - - -
462H ILE* 1.3 75.5 - - - +
464H ALA* 1.3 59.9 + - - +
465H ALA 3.2 0.2 - - - -
466H VAL* 3.2 24.9 + - - +
467H ILE* 4.1 1.2 + - - +
554H ALA* 4.0 14.5 - - - +
557H ILE* 3.9 20.4 - - - +
558H THR* 3.7 21.0 - - - +
583H PHE* 6.1 1.1 - - - -
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Residues in contact with ALA 464 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449H VAL* 4.9 15.5 - - + -
452H LEU* 5.7 5.2 - - + -
461H LEU* 3.1 29.6 + - + -
462H ILE 2.7 5.9 + - - -
463H GLY* 1.3 70.1 - - - +
465H ALA* 1.3 62.7 + - - +
466H VAL 3.0 2.8 + - - -
467H ILE* 3.1 19.2 - - + +
468H ILE* 3.0 30.9 + - + +
558H THR* 4.8 0.6 - - - +
583H PHE* 6.1 4.2 - - + -
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Residues in contact with ALA 465 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE* 2.6 31.5 + - + +
464H ALA* 1.3 72.0 - - - +
466H VAL* 1.3 55.6 + - + +
468H ILE* 3.4 18.2 - - + +
469H LEU* 2.9 41.3 + - + +
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Residues in contact with VAL 466 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE 5.1 0.4 - - - +
463H GLY* 3.3 23.1 - - - +
464H ALA 3.0 0.4 - - - -
465H ALA* 1.3 77.8 - - + +
467H ILE* 1.3 58.7 + - - +
469H LEU* 3.2 10.2 + - - +
470H LEU* 2.9 23.6 + - - +
550H ILE* 4.4 24.0 - - + +
553H ALA* 4.4 20.0 - - + +
554H ALA* 4.8 7.2 - - + -
557H ILE* 4.6 19.3 - - + -
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Residues in contact with ILE 467 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441H MET* 4.9 3.1 - - + -
445H ILE* 3.7 34.5 - - + -
449H VAL* 5.8 2.7 - - + -
463H GLY 4.1 1.2 + - - +
464H ALA* 3.1 23.3 + - + +
466H VAL* 1.3 77.9 - - - +
468H ILE* 1.3 69.4 + - + +
470H LEU* 2.9 33.2 + - + +
471H ALA* 3.4 7.4 + - - +
550H ILE* 4.7 8.5 - - + -
554H ALA* 6.0 2.2 - - + +
586H LEU* 4.3 13.7 - - + -
590H LEU* 3.7 33.9 - - + -
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Residues in contact with ILE 468 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449H VAL* 5.3 15.5 - - + -
464H ALA* 3.0 29.8 + - + +
465H ALA* 3.4 20.0 - - + +
466H VAL 3.2 0.4 - - - -
467H ILE* 1.3 82.4 - - + +
469H LEU* 1.3 65.2 + - + +
471H ALA* 3.8 5.7 + - - +
472H PRO* 3.5 13.5 - - - +
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Residues in contact with LEU 469 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465H ALA* 2.9 27.1 + - + +
466H VAL* 3.6 6.7 - - - +
468H ILE* 1.3 79.3 - - + +
470H LEU* 1.3 63.6 + - - +
471H ALA 3.3 0.2 - - - -
472H PRO* 3.1 22.7 - - + +
473H VAL* 3.7 13.3 + - - +
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Residues in contact with LEU 470 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL 2.9 7.1 + - - +
467H ILE* 2.9 30.2 + - + +
469H LEU* 1.3 76.5 - - - +
471H ALA* 1.3 59.6 + - - +
473H VAL* 2.8 27.9 + - + +
474H GLN* 2.8 34.3 + - + +
546H MET* 3.5 33.9 - - + +
547H ASN* 5.5 1.8 - - - -
550H ILE* 3.7 39.5 - - + -
590H LEU* 4.1 16.2 - - + -
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Residues in contact with ALA 471 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467H ILE 3.4 5.7 + - - +
468H ILE* 4.2 6.1 - - - +
470H LEU* 1.3 78.3 - - - +
472H PRO* 1.3 63.5 - - + +
474H GLN* 3.2 11.1 + - - +
475H TYR* 2.9 29.1 + - - +
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Residues in contact with PRO 472 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468H ILE 3.5 8.1 - - - +
469H LEU* 3.1 25.8 - - + +
471H ALA* 1.3 93.8 - - + +
473H VAL* 1.3 57.5 + - + +
475H TYR* 3.4 6.9 + - + +
476H PHE* 2.9 30.7 + - - +
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Residues in contact with VAL 473 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469H LEU 3.7 13.9 - - - +
470H LEU* 2.8 25.2 + - + +
472H PRO* 1.3 73.6 - - + +
474H GLN* 1.3 55.5 + - - +
476H PHE* 3.3 6.4 + - + +
477H VAL* 2.9 40.0 + - + +
542H ILE* 6.3 0.7 - - + -
546H MET* 3.9 38.8 - - + -
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Residues in contact with GLN 474 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470H LEU* 2.8 54.8 + - + +
471H ALA* 3.5 11.0 - - - +
473H VAL* 1.3 73.5 - - - +
475H TYR* 1.3 58.0 + - - +
477H VAL* 3.3 9.3 + - - +
478H ALA* 2.8 28.2 + - - +
543H SER* 4.2 17.3 + - - +
546H MET* 4.4 9.9 - - - +
547H ASN* 4.9 11.1 - - - +
590H LEU* 5.4 2.3 - - + +
593H LEU* 4.5 26.4 - - + +
594H SER* 5.3 3.1 - - - -
597H VAL* 4.7 16.1 - - + +
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Residues in contact with TYR 475 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471H ALA 2.9 16.5 + - - +
472H PRO* 3.9 6.3 - - + +
474H GLN* 1.3 75.0 - - - +
476H PHE* 1.3 59.5 + - - +
478H ALA* 3.2 12.3 - - + +
479H THR* 2.9 37.6 + - + +
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Residues in contact with PHE 476 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472H PRO 2.9 18.7 + - - +
473H VAL* 3.7 7.9 - - + +
475H TYR* 1.3 77.3 - - - +
477H VAL* 1.3 73.5 + - + +
479H THR* 3.1 19.1 - - + +
480H LYS* 2.9 50.7 + - + +
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Residues in contact with VAL 477 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473H VAL* 2.9 32.8 + - + +
474H GLN* 3.8 7.6 - - - +
476H PHE* 1.3 80.9 - - + +
478H ALA* 1.3 57.6 + - - +
480H LYS* 3.7 6.1 - - - +
481H LEU* 2.9 35.8 + - + +
539H TYR* 4.0 19.9 - - + +
542H ILE* 4.7 17.3 - - + -
543H SER* 3.9 30.3 - - - +
546H MET* 6.3 0.7 - - + -
597H VAL* 6.2 4.0 - - + -
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Residues in contact with ALA 478 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN 2.8 14.5 + - - +
475H TYR* 3.2 21.5 - - + +
477H VAL* 1.3 78.8 - - - +
479H THR* 1.3 58.0 + - - +
481H LEU* 3.2 6.6 + - - +
482H SER* 2.9 27.5 + - - -
597H VAL* 3.4 31.1 - - + +
601H VAL* 3.8 9.0 - - + +
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Residues in contact with THR 479 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475H TYR* 2.9 29.3 + - + +
476H PHE* 3.1 31.2 - - + +
478H ALA* 1.3 75.5 - - - +
480H LYS* 1.3 58.6 + - + +
482H SER* 3.3 9.4 + - - -
483H GLN* 2.9 27.4 + - - +
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Residues in contact with LYS 480 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476H PHE* 2.9 45.3 + - + +
477H VAL* 3.7 7.4 - - - +
478H ALA 3.1 0.2 - - - -
479H THR* 1.3 76.7 - - + +
481H LEU* 1.3 66.6 + - - +
483H GLN* 3.1 31.2 + - + +
484H ALA* 3.0 22.0 + - - +
539H TYR* 3.4 48.2 + - + +
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Residues in contact with LEU 481 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477H VAL* 2.9 23.0 + - + +
478H ALA* 3.6 5.8 - - - +
480H LYS* 1.3 75.8 - - - +
482H SER* 1.3 57.0 + - - +
484H ALA* 3.3 6.6 + - - +
485H GLN* 2.8 36.8 + - - +
536H PHE* 3.5 40.5 - - + +
539H TYR* 4.6 11.6 - - + -
540H THR* 5.2 11.7 - - - +
597H VAL* 6.1 1.8 - - + -
598H ARG* 3.7 33.7 - - + +
601H VAL* 3.6 28.7 - - + -
602H LYS* 5.4 0.9 - - + -
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Residues in contact with SER 482 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478H ALA 2.9 13.1 + - - -
479H THR* 3.3 15.0 - - - -
480H LYS 3.1 0.2 - - - -
481H LEU* 1.3 74.7 - - - +
483H GLN* 1.3 67.1 + - - +
485H GLN* 3.2 10.6 + - - +
486H ARG* 3.6 10.7 + - - +
601H VAL* 3.6 25.5 - - - +
604H LEU* 5.8 3.8 - - - +
605H VAL* 5.1 8.5 - - - +
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Residues in contact with GLN 483 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479H THR 2.9 13.4 + - - +
480H LYS* 3.4 36.9 + - + +
482H SER* 1.3 76.5 - - - +
484H ALA* 1.3 61.3 + - - +
486H ARG* 4.1 8.3 + - - +
487H SER* 4.4 6.9 + - - -
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Residues in contact with ALA 484 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480H LYS 3.0 14.8 + - - +
481H LEU* 3.8 6.1 - - - +
483H GLN* 1.3 77.1 - - - +
485H GLN* 1.3 64.0 + - - +
486H ARG 3.3 0.2 - - - -
487H SER* 3.3 6.1 + - - -
488H THR* 3.0 30.2 + - - +
532H SER* 3.4 14.1 + - - +
535H ALA* 5.0 5.4 - - + -
536H PHE* 5.0 8.1 - - + +
539H TYR* 4.5 18.2 - - + -
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Residues in contact with GLN 485 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 2.8 18.1 + - - +
482H SER 3.2 6.4 + - - +
484H ALA* 1.3 74.8 - - - +
486H ARG* 1.3 61.8 + - - +
488H THR* 3.3 14.7 + - - +
489H LEU* 2.9 44.5 + - + +
536H PHE* 3.1 33.5 - - - -
601H VAL* 4.1 18.6 - - + -
602H LYS* 4.0 29.5 - - + +
605H VAL* 4.8 12.6 - - + -
1133H GLN* 4.5 12.1 + - - +
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Residues in contact with ARG 486 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482H SER 3.6 8.0 + - - +
483H GLN 4.4 7.4 - - - +
484H ALA 3.3 0.6 - - - -
485H GLN* 1.3 78.9 - - - +
487H SER* 1.3 55.6 + - - +
489H LEU* 3.3 5.8 + - - +
490H GLU* 2.9 34.6 + - - +
605H VAL* 5.2 14.7 - - + +
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Residues in contact with SER 487 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483H GLN 4.4 5.0 + - - -
484H ALA* 3.3 11.2 + - - -
486H ARG* 1.3 75.7 - - - +
488H THR* 1.3 66.9 + - - +
490H GLU* 3.1 17.3 + - - +
491H TYR* 2.9 59.5 + - - -
532H SER* 3.7 7.8 + - - -
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Residues in contact with THR 488 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484H ALA 3.0 13.2 + - - -
485H GLN* 3.6 22.7 + - - +
487H SER* 1.3 76.1 - - - +
489H LEU* 1.3 56.3 + - - +
491H TYR* 3.8 3.1 - - - +
492H SER* 2.9 28.9 + - - -
529H GLU* 4.4 9.0 - - + +
532H SER* 2.4 39.1 + - - +
533H LEU* 4.5 25.5 - - + +
536H PHE* 4.6 8.0 - - + +
1133H GLN* 4.8 9.9 - - - +
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Residues in contact with LEU 489 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427H GLN* 5.7 8.1 - - - +
485H GLN* 2.9 30.9 + - + +
486H ARG* 3.8 4.7 - - - +
488H THR* 1.3 75.2 - - - +
490H GLU* 1.3 62.9 + - + +
492H SER* 3.3 7.7 + - - -
493H ASN* 2.9 62.1 + - - +
602H LYS* 5.8 2.2 - - - +
605H VAL* 4.0 25.4 - - + -
606H SER* 5.6 2.9 - - - +
609H LYS* 3.8 30.5 - - + +
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Residues in contact with GLU 490 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486H ARG* 2.9 14.8 + - - +
487H SER* 3.1 33.9 + - - +
489H LEU* 1.3 78.8 - - + +
491H TYR* 1.3 81.8 + - + +
493H ASN* 3.3 11.6 + - - +
494H GLU* 2.9 27.7 + - - +
609H LYS* 6.2 2.2 - - - +
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Residues in contact with TYR 491 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487H SER* 2.9 37.5 + - - +
488H THR 3.8 2.0 - - - +
490H GLU* 1.3 98.1 + - + +
492H SER* 1.3 65.4 + - - +
494H GLU* 3.2 9.2 + - + +
495H ARG* 2.9 20.6 + - - +
525H THR* 4.6 4.9 - - - +
528H LYS* 3.3 53.3 - - + +
529H GLU* 3.5 25.4 - - + +
532H SER* 4.1 5.4 - - - -
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Residues in contact with SER 492 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR* 2.9 18.6 + - - -
489H LEU* 3.5 9.0 - - - -
491H TYR* 1.3 76.5 - - - +
493H ASN* 1.3 58.5 + - - +
495H ARG* 3.2 9.8 + - - +
496H LEU* 2.9 45.5 + - - +
529H GLU* 3.2 25.9 + - - -
1125H SER 5.7 0.3 + - - -
1129H ASN* 5.2 10.0 + - - +
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Residues in contact with ASN 493 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416H GLN* 5.3 17.2 + - + +
419H ASN* 4.1 17.5 + - - -
489H LEU* 2.9 47.8 + - - +
490H GLU* 3.6 7.9 - - - +
492H SER* 1.3 76.8 + - - +
494H GLU* 1.3 63.5 + - - +
496H LEU* 3.2 8.6 + - - +
497H LYS* 2.9 24.6 + - - +
609H LYS* 5.3 3.6 - - - +
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Residues in contact with GLU 494 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490H GLU 2.9 16.9 + - - +
491H TYR* 3.2 12.3 + - + +
493H ASN* 1.3 77.7 - - - +
495H ARG* 1.3 56.7 + - - +
497H LYS* 3.2 30.8 + - - +
498H GLN* 2.8 50.1 + - - +
521H ARG* 5.1 3.3 + - - -
525H THR* 3.9 22.7 - - + +
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Residues in contact with ARG 495 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H TYR 2.9 8.7 + - - +
492H SER* 3.7 6.0 + - - +
494H GLU* 1.3 76.9 - - - +
496H LEU* 1.3 84.8 + - - +
498H GLN* 3.1 9.7 - - - +
499H THR* 2.9 38.8 + - - +
522H VAL* 4.2 13.9 - - + -
525H THR* 4.1 18.3 - - - +
526H ARG* 4.3 15.3 - - + +
529H GLU* 3.4 35.2 + - - +
1097H HIS* 3.9 24.3 + - - +
1124H PHE* 2.8 48.5 + - - +
1125H SER 4.2 4.4 + - - -
1128H CYS* 5.1 3.2 - - - +
1129H ASN* 5.2 5.7 - - - +
1132H ASP* 5.6 0.4 + - - -
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Residues in contact with LEU 496 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419H ASN* 3.2 31.2 - - - +
492H SER* 2.9 33.8 + - - +
493H ASN* 3.5 11.9 - - - +
495H ARG* 1.3 101.5 - - - +
497H LYS* 1.3 62.8 + - - +
499H THR* 3.2 6.4 - - + +
500H ASN* 2.5 44.2 + - - +
1125H SER* 3.5 34.1 - - - +
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Residues in contact with LYS 497 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413H THR* 5.7 11.7 - - + +
493H ASN 2.9 12.2 + - - +
494H GLU* 3.2 42.7 + - - +
496H LEU* 1.3 73.6 - - - +
498H GLN* 1.3 73.1 + - - +
500H ASN* 3.6 8.7 - - - +
501H GLU* 3.0 29.4 + - + +
521H ARG* 5.1 4.4 - - - +
1432H SER* 3.9 30.2 + - - +
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Residues in contact with GLN 498 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494H GLU* 2.8 45.0 + - - +
495H ARG* 3.1 15.3 - - - +
496H LEU 3.1 0.2 - - - -
497H LYS* 1.3 88.3 + - - +
499H THR* 1.3 57.9 + - - +
501H GLU* 3.7 4.3 - - - +
502H MET* 2.9 30.2 + - - +
521H ARG* 3.0 44.6 + - - +
522H VAL* 3.4 35.3 - - + +
525H THR* 4.0 16.9 - - + +
1432H SER* 5.5 0.3 + - - -
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Residues in contact with THR 499 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 2.9 33.7 + - - +
496H LEU* 3.2 19.3 - - + +
498H GLN* 1.3 71.1 - - - +
500H ASN* 1.3 70.5 + - - +
502H MET* 3.5 10.7 - - - +
503H LEU* 2.9 37.6 + - - +
522H VAL* 5.4 4.7 - - - -
1101H LEU* 5.5 8.2 - - - +
1121H LEU* 3.9 21.6 - - + +
1124H PHE* 4.6 13.7 - - + +
----------------------------------------------------------
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Residues in contact with ASN 500 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415H GLY* 5.0 14.7 - - - -
496H LEU* 2.5 43.9 + - - +
497H LYS* 3.6 7.1 - - - +
499H THR* 1.3 79.3 - - - +
501H GLU* 1.3 65.2 + - - +
503H LEU 3.1 0.3 + - - -
504H ARG* 2.9 50.2 + - - +
1121H LEU* 3.1 34.5 - - - +
1125H SER* 5.7 1.0 - - - -
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Residues in contact with GLU 501 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497H LYS* 3.0 17.1 + - + +
498H GLN* 3.7 4.5 - - - +
500H ASN* 1.3 79.7 - - - +
502H MET* 1.3 70.9 + - - +
504H ARG* 3.5 19.6 + - + +
505H GLY* 3.9 3.3 + - - -
509H LEU* 5.5 0.3 - - - +
518H PHE* 5.8 1.4 - - - -
521H ARG* 5.8 1.9 + - - -
1429H VAL* 5.6 1.0 - - - +
1430H LEU 3.0 16.3 - - - +
1431H PHE* 2.9 41.4 - - - -
1432H SER* 3.9 28.5 - - - +
1437H PHE* 5.9 1.1 - - - -
1476H GLU* 6.2 0.4 - - - -
1477H GLY* 5.4 5.8 - - - +
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Residues in contact with MET 502 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498H GLN 2.9 16.5 + - - +
499H THR* 3.5 11.0 - - - +
500H ASN 3.1 0.2 - - - -
501H GLU* 1.3 85.5 + - - +
503H LEU* 1.3 68.0 - - + +
504H ARG 3.1 1.6 + - - -
505H GLY 3.6 3.3 + - - -
506H ILE* 3.3 26.1 + - + -
509H LEU* 3.6 25.7 - - + +
518H PHE* 3.5 47.8 - - + +
519H ARG* 3.8 4.7 - - + +
522H VAL* 3.6 17.9 - - + -
1101H LEU* 5.3 4.9 - - - -
1105H ILE* 3.8 28.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 503 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499H THR* 2.9 33.8 + - - +
500H ASN 3.7 1.3 - - - +
502H MET* 1.3 79.8 - - + +
504H ARG* 1.3 71.1 + - - +
506H ILE* 3.7 33.6 + - + +
1104H ILE* 4.9 15.9 - - + -
1105H ILE* 5.3 4.9 - - + -
1112H PHE* 3.7 20.9 - - + -
1117H LEU* 3.5 30.3 - - + +
1120H ILE* 4.7 20.2 - - + +
1121H LEU* 4.9 15.3 - - + -
1124H PHE* 5.4 4.9 - - + -
----------------------------------------------------------
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Residues in contact with ARG 504 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415H GLY* 6.0 3.6 - - - -
500H ASN* 2.9 53.6 + - - +
501H GLU* 3.5 12.1 - - + +
502H MET 3.1 0.8 - - - -
503H LEU* 1.3 85.3 - - - +
505H GLY* 1.3 59.7 + - - +
506H ILE* 3.4 4.0 + - - +
1117H LEU* 4.4 25.8 - - - +
1121H LEU* 3.9 26.9 - - - +
1429H VAL* 5.3 1.8 - - + -
----------------------------------------------------------
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Residues in contact with GLY 505 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501H GLU 3.9 3.4 + - - -
502H MET 3.6 7.0 + - - -
504H ARG* 1.3 77.9 - - - +
506H ILE* 1.3 64.1 + - - +
507H LYS* 3.1 5.2 - - - -
508H LEU* 3.0 23.6 + - - +
509H LEU* 3.3 9.1 - - - +
1429H VAL* 3.8 31.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il