Contacts of the helix formed by residues 514 - 562 (chain E) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508E LEU* 4.2 10.3 - - + -
509E LEU* 3.6 7.5 + - + +
512E TYR* 3.2 25.3 + + + -
513E ALA* 1.3 87.1 - - - +
515E GLU* 1.3 59.3 + - - +
516E ASN 3.5 1.6 - - - -
517E ILE* 3.2 25.9 + - + +
518E PHE* 2.8 57.7 + + + -
1431E PHE* 4.7 2.9 - + - -
1438E ASN 4.6 2.7 - - - -
1439E LEU 3.9 9.2 - - - -
1441E PRO* 3.3 30.0 - - + +
1493E ARG* 3.4 46.4 - - + -
1497E ARG* 3.1 33.5 - - - +
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Residues in contact with GLU 515 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502E MET* 5.4 0.2 - - - +
506E ILE* 3.7 6.2 - - - +
509E LEU* 3.1 36.9 - - + +
510E LYS* 2.8 56.0 + - - +
513E ALA* 3.5 4.4 - - - -
514E TRP* 1.3 74.5 - - - +
516E ASN* 1.3 55.6 + - - +
517E ILE 3.2 0.4 - - - -
518E PHE 4.4 0.4 - - - +
519E ARG* 2.7 42.1 + - - +
1105E ILE* 3.6 31.2 - - + +
1325E TYR* 4.4 4.7 + - - -
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Residues in contact with ASN 516 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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513E ALA 5.4 0.6 + - - -
514E TRP 3.5 0.2 - - - -
515E GLU* 1.3 76.8 - - - +
517E ILE* 1.3 61.7 + - + +
519E ARG* 3.3 28.2 + - - +
520E THR* 2.9 35.3 + - - +
1415E HIS* 5.1 17.2 + - + +
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Residues in contact with ILE 517 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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513E ALA 4.4 3.4 - - - +
514E TRP* 3.2 40.8 + - + +
515E GLU 3.2 0.6 - - - -
516E ASN* 1.3 79.7 - - + +
518E PHE* 1.3 64.6 + - + +
520E THR* 3.1 11.5 - - + +
521E ARG* 2.9 29.3 + - + +
1437E PHE* 5.8 1.6 - - + -
1441E PRO* 3.6 37.5 - - + +
1442E GLU* 4.5 11.9 - - + +
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Residues in contact with PHE 518 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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501E GLU* 5.8 1.6 - - - -
502E MET* 3.5 18.6 - - + -
509E LEU* 3.4 25.1 - - + -
514E TRP* 2.8 50.0 + + + +
515E GLU 4.5 0.2 - - - +
517E ILE* 1.3 78.1 - - + +
519E ARG* 1.3 58.1 + - - +
521E ARG* 3.3 9.4 + - - +
522E VAL* 2.9 34.5 + - + +
1431E PHE* 3.4 40.4 - + - -
1437E PHE* 3.5 34.3 - + - -
1441E PRO* 3.8 22.9 - - + -
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Residues in contact with ARG 519 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502E MET* 3.8 8.4 - - - +
515E GLU 2.7 25.3 + - - +
516E ASN* 3.3 28.7 + - - +
518E PHE* 1.3 77.6 - - - +
520E THR* 1.3 60.4 + - - +
522E VAL* 3.3 5.4 + - - +
523E GLU* 2.8 27.9 + - + +
1101E LEU* 4.3 12.2 - - + +
1102E ASN* 2.9 32.0 + - - +
1105E ILE* 3.6 36.7 - - + +
1106E LEU* 5.1 8.2 - - - +
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Residues in contact with THR 520 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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516E ASN* 2.9 24.5 + - - +
517E ILE* 3.1 20.9 - - + +
519E ARG* 1.3 77.6 - - - +
521E ARG* 1.3 66.2 + - - +
523E GLU* 3.3 10.6 - - - +
524E THR* 2.9 29.1 + - + +
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Residues in contact with ARG 521 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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494E GLU* 5.1 3.6 + - - -
497E LYS* 5.1 4.2 - - - +
498E GLN* 3.0 35.6 + - - +
501E GLU* 5.8 2.0 + - - -
517E ILE* 2.9 15.9 + - + +
518E PHE* 3.4 15.6 - - - +
519E ARG 3.3 0.2 - - - -
520E THR* 1.3 78.0 - - - +
522E VAL* 1.3 58.8 + - - +
524E THR* 2.2 33.1 + - - +
525E THR* 3.4 7.1 + - + +
1432E SER* 4.4 10.7 + - - -
1433E GLY* 5.7 1.4 - - - -
1437E PHE* 3.3 53.4 - - - -
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Residues in contact with VAL 522 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495E ARG* 4.2 16.4 - - + +
498E GLN* 3.4 39.9 - - + +
499E THR* 4.9 4.7 - - - +
502E MET* 3.6 20.6 - - + -
518E PHE 2.9 22.2 + - - +
519E ARG* 3.7 5.4 - - - +
521E ARG* 1.3 71.7 - - - +
523E GLU* 1.3 61.9 + - - +
525E THR* 2.3 31.9 + - - +
526E ARG* 2.8 13.7 + - + +
1097E HIS* 5.3 0.9 - - + -
1101E LEU* 4.5 20.0 - - + -
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Residues in contact with GLU 523 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519E ARG* 2.8 18.7 + - + +
520E THR* 3.1 17.7 + - - +
522E VAL* 1.3 77.6 - - - +
524E THR* 1.3 55.6 + - - +
526E ARG* 3.3 8.3 + - - +
527E ARG* 2.8 29.7 + - - +
1101E LEU* 5.2 7.8 - - + +
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Residues in contact with THR 524 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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520E THR* 2.9 23.8 + - - +
521E ARG* 2.2 33.4 + - - +
523E GLU* 1.3 76.4 - - + +
525E THR* 1.3 66.3 + - - +
527E ARG* 3.0 33.4 + - - +
528E LYS* 2.9 28.8 + - - +
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Residues in contact with THR 525 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491E TYR* 4.6 4.1 - - - +
494E GLU* 3.9 30.1 - - + +
495E ARG* 4.1 9.7 - - - +
498E GLN* 4.0 19.7 - - + +
521E ARG* 3.6 12.6 - - + +
522E VAL* 2.3 36.0 + - - +
524E THR* 1.3 83.4 + - - +
526E ARG* 1.3 58.7 + - - +
528E LYS* 3.2 9.6 + - - +
529E GLU* 2.9 29.7 + - - +
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Residues in contact with ARG 526 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495E ARG* 4.3 11.7 - - + +
522E VAL 2.8 19.2 + - - +
523E GLU* 3.6 9.4 - - - +
525E THR* 1.3 74.6 + - - +
527E ARG* 1.3 57.3 + - - +
529E GLU* 3.5 37.0 + - - +
530E MET* 2.8 48.4 + - + +
533E LEU* 5.8 1.0 - - - +
1093E ALA* 4.3 7.5 + - - +
1097E HIS* 3.0 59.7 + - + +
1128E CYS* 3.4 18.0 - - - -
1132E ASP* 3.3 28.3 + - - +
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Residues in contact with ARG 527 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523E GLU 2.8 17.5 + - - +
524E THR* 3.0 30.8 + - - +
526E ARG* 1.3 76.3 - - - +
528E LYS* 1.3 77.6 + - + +
530E MET* 3.4 7.8 - - + +
531E THR* 2.9 37.9 + - - +
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Residues in contact with LYS 528 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491E TYR* 3.3 42.8 - - + +
524E THR* 2.9 20.2 + - - +
525E THR* 3.5 9.4 - - - +
527E ARG* 1.3 96.8 - - + +
529E GLU* 1.3 61.3 + - - +
531E THR* 3.2 8.7 + - - +
532E SER* 3.0 19.1 + - - -
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Residues in contact with GLU 529 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488E THR* 4.4 11.2 - - + +
491E TYR* 3.5 15.6 - - + +
492E SER* 3.2 37.2 + - - +
495E ARG* 3.4 35.3 + - - +
525E THR 2.9 15.1 + - - +
526E ARG* 3.5 33.0 + - - +
528E LYS* 1.3 75.7 - - - +
530E MET* 1.3 57.5 + - - +
532E SER* 3.4 2.8 + - - +
533E LEU* 2.9 37.2 + - + +
1132E ASP* 4.6 4.3 - - - +
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Residues in contact with MET 530 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526E ARG* 2.8 49.0 + - + +
527E ARG* 3.4 11.4 - - + +
528E LYS 3.2 0.2 - - - -
529E GLU* 1.3 74.2 - - - +
531E THR* 1.3 57.4 + - - +
533E LEU* 3.5 9.6 + - - -
534E ARG* 2.8 33.0 + - + +
1090E LEU* 4.4 23.8 - - + +
1093E ALA* 4.8 2.7 - - + -
1094E LYS* 3.6 55.6 - - + +
1097E HIS* 5.4 0.4 - - + -
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Residues in contact with THR 531 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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527E ARG* 2.9 23.7 + - - +
528E LYS* 3.6 9.2 - - - +
530E MET* 1.3 77.2 - - - +
532E SER* 1.3 57.7 + - - +
534E ARG* 3.0 38.2 + - - +
535E ALA* 3.0 28.2 + - + +
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Residues in contact with SER 532 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484E ALA* 3.4 10.6 + - - +
487E SER* 3.7 7.5 - - - -
488E THR* 2.4 47.7 + - - -
491E TYR* 4.1 10.5 - - - -
528E LYS 3.0 16.1 + - - -
529E GLU 3.9 2.7 - - - -
531E THR* 1.3 76.9 - - - +
533E LEU* 1.3 59.2 + - - +
535E ALA* 3.3 8.2 + - - +
536E PHE* 2.9 26.0 + - - +
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Residues in contact with LEU 533 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488E THR* 4.0 15.1 + - + +
526E ARG* 5.8 1.1 - - - +
529E GLU* 2.9 24.8 + - + +
530E MET* 3.9 10.1 - - - +
532E SER* 1.3 76.5 - - - +
534E ARG* 1.3 57.5 + - - +
536E PHE* 3.3 15.8 - - + +
537E ALA* 2.8 30.4 + - + +
1090E LEU* 4.4 22.4 - - + -
1093E ALA* 5.7 2.5 - - + -
1132E ASP* 3.2 54.7 - - + +
1133E GLN* 4.5 8.1 - - + +
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Residues in contact with ARG 534 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530E MET* 2.8 22.0 + - - +
531E THR* 3.0 37.9 + - - +
533E LEU* 1.3 76.0 - - - +
535E ALA* 1.3 60.8 + - - +
537E ALA* 3.2 2.1 + - - +
538E ILE* 2.9 47.1 + - + +
1090E LEU* 3.4 30.7 - - + +
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Residues in contact with ALA 535 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484E ALA* 5.0 6.3 - - + -
531E THR* 3.0 11.9 + - + +
532E SER* 3.6 9.9 - - - +
534E ARG* 1.3 76.0 - - - +
536E PHE* 1.3 63.5 + - - +
538E ILE* 3.3 12.7 + - - +
539E TYR* 2.9 51.5 + - + +
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Residues in contact with PHE 536 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481E LEU* 3.5 36.5 - - + +
484E ALA* 5.0 7.1 - - + +
485E GLN* 3.1 27.6 - - - -
488E THR* 4.6 10.5 - - + +
532E SER 2.9 14.7 + - - +
533E LEU* 3.3 23.6 - - + +
535E ALA* 1.3 76.7 - - - +
537E ALA* 1.3 59.5 + - + +
539E TYR* 3.3 8.9 + - - +
540E THR* 2.9 32.5 + - + +
598E ARG* 3.3 43.3 - - + -
602E LYS* 5.3 8.1 - - + -
1132E ASP 5.9 0.2 - - - -
1133E GLN* 4.8 18.2 - - + -
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Residues in contact with ALA 537 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533E LEU* 2.8 24.8 + - + +
534E ARG 3.2 4.5 + - - +
536E PHE* 1.3 73.4 - - + +
538E ILE* 1.3 67.1 + - + +
540E THR* 3.1 12.0 - - + +
541E SER* 2.9 25.6 + - - -
1086E GLU* 3.8 21.8 - - + +
1090E LEU* 4.3 15.7 - - + -
1136E PRO* 6.5 1.3 - - + -
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Residues in contact with ILE 538 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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534E ARG* 2.9 35.8 + - + +
535E ALA* 3.3 11.9 + - - +
537E ALA* 1.3 77.6 - - + +
539E TYR* 1.3 66.7 + - + +
541E SER* 3.3 5.8 + - - -
542E ILE* 2.9 48.5 + - + +
1086E GLU* 5.4 0.9 - - - -
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Residues in contact with TYR 539 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477E VAL* 4.0 16.9 - - + +
480E LYS* 3.4 53.4 + - + +
481E LEU* 4.6 11.9 - - + -
484E ALA* 4.5 10.3 - - + -
535E ALA* 2.9 41.7 + - + +
536E PHE* 3.7 7.2 - - - +
538E ILE* 1.3 86.4 - - + +
540E THR* 1.3 58.2 + - - +
542E ILE* 3.2 22.2 + - + +
543E SER* 2.9 25.8 + - - -
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Residues in contact with THR 540 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477E VAL* 5.7 0.2 - - - -
481E LEU* 5.2 6.9 - - - +
536E PHE* 2.9 23.2 + - + +
537E ALA* 3.1 23.8 - - + +
539E TYR* 1.3 75.9 - - - +
541E SER* 1.3 57.5 + - - +
543E SER* 3.3 7.9 + - - -
544E ILE* 2.9 44.7 + - + +
594E SER* 5.2 1.4 + - - -
598E ARG* 3.3 40.9 + - - +
1086E GLU* 5.2 3.4 - - + -
1136E PRO* 6.2 4.5 - - + -
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Residues in contact with SER 541 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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537E ALA 2.9 18.3 + - - -
538E ILE* 3.6 6.1 - - - -
540E THR* 1.3 76.4 - - - +
542E ILE* 1.3 59.7 + - - +
544E ILE* 3.2 11.0 + - - +
545E PHE* 2.9 30.3 + - - +
1082E SER* 3.1 30.6 + - - -
1083E VAL* 3.5 11.5 + - - +
1086E GLU* 3.6 17.7 - - - -
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Residues in contact with ILE 542 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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473E VAL* 6.3 0.9 - - + -
477E VAL* 4.7 15.0 - - + -
538E ILE* 2.9 39.6 + - + +
539E TYR* 3.2 24.4 + - + +
541E SER* 1.3 76.3 - - - +
543E SER* 1.3 58.3 + - - +
545E PHE* 3.9 6.8 - - + +
546E MET* 2.9 36.9 + - + +
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Residues in contact with SER 543 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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474E GLN* 4.2 18.7 + - - +
477E VAL* 3.9 23.0 - - - +
539E TYR 2.9 12.9 + - - -
540E THR* 3.6 11.9 - - - -
541E SER 3.2 0.4 - - - -
542E ILE* 1.3 77.7 - - - +
544E ILE* 1.3 55.7 + - - +
546E MET* 3.8 4.7 - - - +
547E ASN* 2.9 31.9 + - - +
594E SER* 3.6 23.4 + - - -
597E VAL* 5.2 3.1 - - - +
598E ARG* 6.5 1.1 - - - -
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Residues in contact with ILE 544 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540E THR* 2.9 35.5 + - + +
541E SER* 3.6 7.9 - - - +
543E SER* 1.3 76.8 - - - +
545E PHE* 1.3 63.0 + - - +
547E ASN* 3.2 7.7 - - - +
548E THR* 3.0 24.4 + - - +
594E SER* 4.1 15.7 - - - +
598E ARG* 5.8 2.0 - - - +
1078E CYS* 6.0 1.6 - - - -
1082E SER* 3.9 19.3 - - - +
1085E VAL* 5.5 6.5 - - + -
1086E GLU* 6.6 0.2 - - + -
1136E PRO* 6.1 1.1 - - + -
1137E SER* 5.9 2.0 - - - -
1140E GLU* 4.1 30.3 - - + +
1144E ARG* 3.3 25.8 - - - +
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Residues in contact with PHE 545 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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541E SER 2.9 12.4 + - - +
542E ILE* 4.0 6.1 - - + +
544E ILE* 1.3 76.8 - - - +
546E MET* 1.3 69.5 + - + +
548E THR 3.3 0.2 + - - -
549E ALA* 2.8 50.8 + - + +
1075E ILE* 3.1 48.2 - - + -
1076E VAL* 5.6 0.2 - - - -
1078E CYS* 3.5 15.0 - - + -
1079E LEU* 3.4 47.8 - - + -
1082E SER* 3.4 17.9 - - - +
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Residues in contact with MET 546 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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470E LEU* 3.5 25.1 - - + -
473E VAL* 3.9 28.0 - - + -
474E GLN* 4.4 3.4 - - - +
477E VAL* 6.3 1.1 - - + -
542E ILE* 2.9 26.1 + - + +
543E SER* 3.8 4.9 - - - +
545E PHE* 1.3 83.5 - - + +
547E ASN* 1.3 65.0 + - - +
549E ALA* 4.2 5.4 - - - -
550E ILE* 3.0 49.2 + - - +
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Residues in contact with ASN 547 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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470E LEU* 5.5 1.1 - - - -
474E GLN* 4.9 9.3 - - - +
543E SER* 2.9 20.2 + - - +
544E ILE* 3.2 9.0 - - - +
546E MET* 1.3 78.7 - - - +
548E THR* 1.3 63.2 + - - +
550E ILE* 3.3 8.3 - - - +
551E PRO* 3.1 18.4 - - - +
587E VAL* 4.6 4.0 + - - +
590E LEU* 2.7 53.2 - - - +
591E PHE* 3.1 16.1 - - - +
594E SER* 3.4 14.6 + - - -
1144E ARG* 4.8 2.6 + - - +
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Residues in contact with THR 548 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544E ILE* 3.0 15.3 + - - +
547E ASN* 1.3 75.6 - - - +
549E ALA* 1.3 57.7 + - - +
551E PRO* 3.2 20.9 - - + +
552E ILE* 4.3 7.4 - - - +
1022E LYS* 3.4 30.1 - - - +
1023E HIS* 5.3 0.4 - - - +
1078E CYS* 3.6 17.8 - - - +
1144E ARG* 3.5 29.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 549 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545E PHE* 2.8 50.4 + - + +
546E MET* 3.8 5.8 - - - +
548E THR* 1.3 76.7 - - - +
550E ILE* 1.3 66.2 + - + +
551E PRO* 3.2 3.4 - - - -
552E ILE* 3.1 27.0 - - - +
553E ALA* 3.2 8.5 + - - +
1075E ILE* 3.9 12.1 - - + +
1078E CYS* 4.9 2.2 - - - -
----------------------------------------------------------
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Residues in contact with ILE 550 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466E VAL* 4.4 19.7 - - + +
467E ILE* 4.7 10.5 - - + -
470E LEU* 3.7 31.4 - - + -
546E MET* 3.0 37.6 + - - +
547E ASN* 3.3 14.6 - - - +
549E ALA* 1.3 78.6 - - - +
551E PRO* 1.3 68.1 - - + +
553E ALA* 3.4 8.0 + - + +
554E ALA* 2.9 29.7 + - + +
587E VAL* 5.5 0.4 - - + -
590E LEU* 3.7 28.7 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547E ASN 3.1 19.5 - - - +
548E THR* 3.2 22.9 - - + +
549E ALA 3.2 0.4 - - - -
550E ILE* 1.3 98.3 - - + +
552E ILE* 1.3 61.5 + - + +
554E ALA* 3.1 6.6 + - + +
555E VAL* 2.9 35.5 + - + +
583E PHE* 5.0 8.5 - - + +
584E HIS* 6.4 0.2 - - - -
587E VAL* 4.1 26.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 552 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548E THR 4.3 6.7 - - - +
549E ALA* 3.1 27.6 - - - +
551E PRO* 1.3 76.9 - - + +
553E ALA* 1.3 76.4 + - - +
555E VAL* 3.1 14.2 - - + +
556E LEU* 3.0 26.0 + - + +
1026E LEU* 3.9 28.3 - - + -
1029E ILE* 6.2 4.0 - - + -
1071E CYS* 4.2 21.5 - - + +
1074E GLY* 5.3 4.3 - - - -
1075E ILE* 3.5 42.0 - - + +
----------------------------------------------------------
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Residues in contact with ALA 553 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466E VAL* 4.4 14.8 - - + -
549E ALA 3.2 14.3 + - - +
550E ILE* 3.5 13.7 - - + +
552E ILE* 1.3 83.3 - - + +
554E ALA* 1.3 56.5 + - - +
556E LEU* 3.3 6.4 + - - +
557E ILE* 2.9 38.1 + - + +
1075E ILE* 5.4 5.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463E GLY 4.0 22.7 - - - +
466E VAL* 4.8 5.8 - - + +
467E ILE* 6.0 2.5 - - + +
550E ILE* 2.9 19.5 + - + +
551E PRO* 3.5 7.2 - - + +
553E ALA* 1.3 75.8 - - - +
555E VAL* 1.3 60.1 + - - +
557E ILE* 3.3 3.3 + - - +
558E THR* 2.9 33.1 + - - +
583E PHE* 4.6 17.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551E PRO* 2.9 13.7 + - + +
552E ILE* 3.1 27.8 - - + +
554E ALA* 1.3 75.1 - - - +
556E LEU* 1.3 68.4 + - + +
558E THR* 2.7 20.4 + - - -
559E PHE* 2.9 34.0 + - + -
580E LEU* 4.6 18.2 - - + -
583E PHE* 3.4 32.1 - - + -
1029E ILE* 6.2 1.3 - - + -
1067E PHE* 5.4 3.4 - - + -
1071E CYS* 4.8 8.1 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552E ILE* 3.0 19.5 + - + +
553E ALA* 3.6 6.1 - - - +
555E VAL* 1.3 80.0 - - - +
557E ILE* 1.3 73.9 + - + +
559E PHE 3.8 0.3 - - - -
560E VAL* 2.9 47.4 + - + +
1067E PHE* 4.3 10.3 - - + -
1068E THR* 3.7 26.9 - - + +
1071E CYS* 3.7 35.2 - - + -
1072E SER 5.7 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ILE 557 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462E ILE* 3.9 26.5 - - + +
463E GLY* 3.9 13.5 - - - -
466E VAL* 4.6 12.6 - - + -
553E ALA* 2.9 22.2 + - + +
554E ALA 4.0 2.0 - - - +
556E LEU* 1.3 85.6 - - + +
558E THR* 1.3 65.1 + - - +
560E VAL* 3.8 5.2 - - + +
561E GLY* 2.9 21.0 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452E LEU* 6.1 0.4 - - + -
460E ALA 5.1 5.2 - - - +
461E LEU* 3.8 18.2 - - + +
462E ILE* 5.6 0.7 - - - -
463E GLY* 3.7 22.7 - - - +
464E ALA 4.8 0.2 - - - +
554E ALA 2.9 18.5 + - - +
555E VAL* 2.7 25.6 + - - -
557E ILE* 1.3 74.3 - - - +
559E PHE* 1.3 68.4 + - - -
561E GLY* 2.8 20.1 + - - -
562E HIS* 3.4 12.9 + - - -
579E SER* 5.3 2.0 - - - +
583E PHE* 3.7 27.3 - - + -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456E LEU* 6.1 0.7 - - + -
555E VAL* 2.9 22.6 + - + +
556E LEU 4.1 1.8 - - - +
558E THR* 1.3 93.8 + - - +
560E VAL* 1.3 60.0 + - + +
562E HIS* 3.2 30.8 + + - +
563E VAL* 4.7 2.6 + - - +
576E ALA* 3.1 46.4 - - + -
579E SER* 4.5 9.9 - - - -
580E LEU* 3.8 24.0 - - + -
583E PHE* 5.0 0.7 - + - -
1033E LEU* 3.6 26.9 - - + -
1036E TRP* 6.0 4.7 + - - +
1067E PHE* 3.9 29.2 - + + -
----------------------------------------------------------
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Residues in contact with VAL 560 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556E LEU* 2.9 43.1 + - + +
557E ILE* 4.0 6.5 - - + +
559E PHE* 1.3 73.5 - - + +
561E GLY* 1.3 55.3 + - - +
562E HIS 3.1 2.7 - - - -
563E VAL* 2.7 46.4 + - + +
1067E PHE* 5.7 2.5 - - + -
1068E THR* 4.5 11.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460E ALA* 5.0 19.0 - - - +
462E ILE* 5.5 6.7 - - - -
557E ILE 2.9 12.3 + - - -
558E THR* 2.8 12.5 + - - -
560E VAL* 1.3 75.7 - - - +
562E HIS* 1.3 62.2 + - - +
563E VAL 3.0 8.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456E LEU* 5.8 6.0 - - + +
558E THR* 3.4 12.9 + - - -
559E PHE* 3.2 36.0 + + - +
560E VAL 3.1 0.2 - - - -
561E GLY* 1.3 75.6 - - - +
563E VAL* 1.3 69.7 + - + +
575E VAL* 5.2 12.9 - - + +
576E ALA* 5.5 6.5 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il