Contacts of the helix formed by residues 514 - 562 (chain F) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508F LEU* 4.2 10.5 - - + -
509F LEU* 3.6 7.4 + - + +
512F TYR* 3.2 24.5 - + + -
513F ALA* 1.3 87.0 - - - +
515F GLU* 1.3 58.2 + - - +
516F ASN 3.5 2.2 - - - -
517F ILE* 3.2 25.1 + - + +
518F PHE* 2.8 57.8 + + + -
1431F PHE* 4.7 2.9 - + - -
1438F ASN 4.6 2.7 - - - -
1439F LEU 3.9 9.0 - - - -
1441F PRO* 3.3 30.7 - - + +
1493F ARG* 3.4 46.7 - - + -
1497F ARG* 3.1 33.9 - - + +
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Residues in contact with GLU 515 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502F MET* 5.4 0.3 - - - +
506F ILE* 3.7 7.0 - - - +
509F LEU* 3.1 38.1 - - + +
510F LYS* 2.8 55.6 + - - +
513F ALA* 3.5 3.6 - - - -
514F TRP* 1.3 74.3 - - - +
516F ASN* 1.3 56.5 + - - +
517F ILE 3.2 0.7 - - - -
518F PHE 4.4 0.7 - - - +
519F ARG* 2.7 41.9 + - - +
1105F ILE* 3.6 30.6 - - + +
1325F TYR* 4.4 3.8 + - - -
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Residues in contact with ASN 516 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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513F ALA 5.4 0.6 + - - -
514F TRP 3.5 0.2 - - - -
515F GLU* 1.3 76.1 - - - +
517F ILE* 1.3 60.5 + - + +
519F ARG* 3.3 27.9 + - - +
520F THR* 2.9 36.1 + - - +
1415F HIS* 5.1 15.8 + - + +
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Residues in contact with ILE 517 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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513F ALA 4.4 3.6 - - - +
514F TRP* 3.2 39.9 + - + +
515F GLU 3.2 0.8 - - - -
516F ASN* 1.3 78.9 - - + +
518F PHE* 1.3 64.6 + - + +
520F THR* 3.1 11.6 - - + +
521F ARG* 2.9 29.6 + - + +
1437F PHE* 5.8 1.3 - - + -
1441F PRO* 3.6 38.6 - - + +
1442F GLU* 4.5 12.1 - - + +
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Residues in contact with PHE 518 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498F GLN* 5.0 0.2 + - - -
501F GLU* 5.8 1.3 - - - -
502F MET* 3.5 19.5 - - + -
509F LEU* 3.4 25.4 - - + -
514F TRP* 2.8 50.6 + + + +
515F GLU 4.5 0.2 - - - +
517F ILE* 1.3 76.6 - - + +
519F ARG* 1.3 56.8 + - - +
521F ARG* 3.3 7.9 + - - +
522F VAL* 2.9 34.4 + - + +
1431F PHE* 3.4 39.9 - + - -
1437F PHE* 3.5 35.4 - + - -
1441F PRO* 3.8 22.0 - - + -
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Residues in contact with ARG 519 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502F MET* 3.8 8.2 - - - +
515F GLU 2.7 25.1 + - - +
516F ASN* 3.3 28.7 + - - +
518F PHE* 1.3 78.2 - - - +
520F THR* 1.3 60.3 + - - +
522F VAL* 3.3 4.2 + - - +
523F GLU* 2.8 28.1 + - + +
1101F LEU* 4.3 12.7 - - + +
1102F ASN* 2.9 32.0 + - - +
1105F ILE* 3.6 37.4 - - + +
1106F LEU* 5.1 8.8 - - - +
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Residues in contact with THR 520 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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516F ASN* 2.9 25.0 + - - +
517F ILE* 3.1 20.6 - - + +
519F ARG* 1.3 78.8 - - - +
521F ARG* 1.3 66.7 + - + +
523F GLU* 3.3 10.5 - - - +
524F THR* 2.9 29.8 + - - +
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Residues in contact with ARG 521 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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494F GLU* 5.1 3.6 + - - -
497F LYS* 5.1 3.8 - - - +
498F GLN* 3.0 36.8 + - - +
501F GLU* 5.8 2.0 + - - -
517F ILE* 2.9 16.5 + - + +
518F PHE* 3.4 14.6 - - - +
520F THR* 1.3 78.1 - - + +
522F VAL* 1.3 58.8 + - - +
524F THR* 2.2 33.6 + - - +
525F THR* 3.4 7.9 + - + +
1432F SER* 4.4 11.5 + - - -
1433F GLY* 5.7 1.0 - - - -
1437F PHE* 3.3 53.0 - - - -
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Residues in contact with VAL 522 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495F ARG* 4.2 16.2 - - + +
498F GLN* 3.4 39.7 - - + +
499F THR* 5.1 4.7 - - - +
502F MET* 3.6 21.3 - - + -
518F PHE 2.9 21.1 + - - +
519F ARG* 3.7 5.4 - - - +
521F ARG* 1.3 71.5 - - - +
523F GLU* 1.3 60.4 + - - +
525F THR* 2.3 31.8 + - - +
526F ARG* 2.8 14.0 + - + +
1097F HIS* 5.3 1.3 - - + -
1101F LEU* 4.5 20.2 - - + -
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Residues in contact with GLU 523 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519F ARG* 2.8 18.7 + - + +
520F THR* 3.1 17.0 + - - +
522F VAL* 1.3 76.6 - - - +
524F THR* 1.3 57.9 + - - +
526F ARG* 3.3 8.9 + - - +
527F ARG* 2.8 29.5 + - - +
1101F LEU* 5.2 7.4 - - + +
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Residues in contact with THR 524 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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520F THR* 2.9 22.6 + - + +
521F ARG* 2.2 33.3 + - - +
523F GLU* 1.3 76.6 - - + +
525F THR* 1.3 68.3 + - - +
527F ARG* 3.0 32.7 + - - +
528F LYS* 2.9 28.5 + - - +
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Residues in contact with THR 525 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491F TYR* 4.6 4.0 - - - +
494F GLU* 3.9 31.2 - - + +
495F ARG* 4.1 10.0 - - - +
498F GLN* 4.0 18.6 - - + +
521F ARG* 3.6 13.2 - - + +
522F VAL* 2.3 36.2 + - - +
524F THR* 1.3 83.1 + - - +
526F ARG* 1.3 59.1 + - - +
528F LYS* 3.2 9.5 + - - +
529F GLU* 2.9 30.2 + - - +
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Residues in contact with ARG 526 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495F ARG* 4.3 11.8 - - + +
522F VAL 2.8 19.3 + - - +
523F GLU* 3.6 9.2 - - - +
524F THR 3.2 0.2 - - - -
525F THR* 1.3 73.9 + - - +
527F ARG* 1.3 56.6 + - - +
529F GLU* 3.4 37.8 + - - +
530F MET* 2.8 48.9 + - + +
533F LEU* 5.8 1.5 - - - +
1093F ALA* 4.3 8.1 + - - +
1097F HIS* 3.0 59.6 + - + +
1128F CYS* 3.4 17.4 - - - -
1132F ASP* 3.3 28.9 + - - +
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Residues in contact with ARG 527 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523F GLU 2.8 17.7 + - - +
524F THR* 3.0 30.1 + - - +
526F ARG* 1.3 75.0 - - - +
528F LYS* 1.3 78.5 + - + +
530F MET* 3.4 8.1 - - + +
531F THR* 2.9 38.5 + - - +
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Residues in contact with LYS 528 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491F TYR* 3.3 41.4 - - + +
524F THR* 2.9 18.5 + - - +
525F THR* 3.5 9.9 - - - +
527F ARG* 1.3 94.4 - - - +
529F GLU* 1.3 61.9 + - - +
531F THR* 3.2 8.5 + - - +
532F SER* 3.0 19.4 + - - -
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Residues in contact with GLU 529 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488F THR* 4.4 11.3 - - + +
491F TYR* 3.5 15.7 - - + +
492F SER* 3.2 37.6 + - - +
495F ARG* 3.4 34.5 + - - +
525F THR 2.9 15.0 + - - +
526F ARG* 3.5 32.9 + - - +
528F LYS* 1.3 77.4 - - - +
530F MET* 1.3 57.0 + - - +
532F SER* 3.4 2.3 + - - -
533F LEU* 2.9 38.3 + - + +
1132F ASP* 4.6 4.5 - - - +
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Residues in contact with MET 530 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526F ARG* 2.8 50.6 + - + +
527F ARG* 3.4 11.2 - - + +
528F LYS 3.2 0.2 - - - -
529F GLU* 1.3 73.5 - - - +
531F THR* 1.3 57.3 + - - +
533F LEU* 3.7 10.1 - - - -
534F ARG* 2.8 33.7 + - + +
1090F LEU* 4.4 23.6 - - + +
1093F ALA* 4.8 3.1 - - + -
1094F LYS* 3.6 55.0 - - + +
1097F HIS* 5.4 0.4 - - + -
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Residues in contact with THR 531 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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527F ARG* 2.9 22.5 + - - +
528F LYS* 3.6 9.7 - - - +
530F MET* 1.3 77.4 - - - +
532F SER* 1.3 57.6 + - - +
534F ARG* 3.0 38.5 + - - +
535F ALA* 3.0 27.4 + - + +
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Residues in contact with SER 532 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484F ALA* 3.3 9.9 + - - +
487F SER* 3.7 7.8 - - - -
488F THR* 2.4 46.9 + - - -
491F TYR* 4.1 10.1 - - - -
528F LYS 3.0 17.3 + - - -
529F GLU 3.9 2.2 - - - -
531F THR* 1.3 76.9 - - - +
533F LEU* 1.3 58.4 + - - +
534F ARG 3.3 0.2 + - - -
535F ALA* 3.3 8.1 + - - +
536F PHE* 2.9 26.5 + - - +
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Residues in contact with LEU 533 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488F THR* 4.0 16.0 + - + +
526F ARG* 5.8 0.9 - - - +
529F GLU* 2.9 24.1 + - + +
530F MET* 3.9 10.8 - - - +
532F SER* 1.3 76.1 - - - +
534F ARG* 1.3 57.8 + - - +
536F PHE* 3.3 17.4 - - + +
537F ALA* 2.8 29.9 + - + +
1090F LEU* 4.4 22.4 - - + -
1093F ALA* 5.7 1.6 - - + -
1132F ASP* 3.2 55.0 - - + +
1133F GLN* 4.5 7.4 - - + +
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Residues in contact with ARG 534 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530F MET* 2.8 23.6 + - + +
531F THR* 3.0 37.3 + - - +
533F LEU* 1.3 74.9 - - - +
535F ALA* 1.3 59.9 + - - +
537F ALA* 3.2 2.4 + - - +
538F ILE* 2.9 45.9 + - + +
1090F LEU* 3.4 30.7 - - + -
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Residues in contact with ALA 535 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484F ALA* 5.0 6.5 - - + -
531F THR* 3.0 12.2 + - + +
532F SER* 3.6 9.6 - - - +
534F ARG* 1.3 76.0 - - - +
536F PHE* 1.3 63.6 + - - +
538F ILE* 3.3 12.6 + - - +
539F TYR* 2.9 50.4 + - + +
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Residues in contact with PHE 536 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481F LEU* 3.5 36.0 - - + +
484F ALA* 5.0 6.6 - - + +
485F GLN* 3.1 28.7 - - - -
488F THR* 4.6 10.5 - - + +
532F SER 2.9 13.9 + - - +
533F LEU* 3.3 24.7 - - + +
534F ARG 3.2 0.2 - - - -
535F ALA* 1.3 76.8 - - - +
537F ALA* 1.3 61.3 + - + +
539F TYR* 3.3 8.9 + - - +
540F THR* 2.9 31.7 + - + +
598F ARG* 3.3 43.1 - - + -
602F LYS* 5.3 8.3 - - + -
1133F GLN* 4.8 18.2 - - + -
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Residues in contact with ALA 537 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533F LEU* 2.8 25.1 + - + +
534F ARG 3.7 4.7 - - - +
536F PHE* 1.3 73.3 - - + +
538F ILE* 1.3 66.6 + - + +
540F THR* 3.1 12.2 - - + +
541F SER* 2.9 26.0 + - - -
1086F GLU* 3.8 22.9 - - + +
1090F LEU* 4.3 16.2 - - + -
1136F PRO* 6.5 1.3 - - + -
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Residues in contact with ILE 538 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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534F ARG* 2.9 35.8 + - + +
535F ALA* 3.5 11.4 - - - +
537F ALA* 1.3 79.2 - - + +
539F TYR* 1.3 66.3 + - + +
541F SER* 3.3 6.0 + - - -
542F ILE* 2.9 49.3 + - + +
1086F GLU* 5.4 0.7 - - - -
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Residues in contact with TYR 539 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477F VAL* 4.0 14.9 - - + +
480F LYS* 3.4 53.6 + - + +
481F LEU* 4.6 10.8 - - + +
484F ALA* 4.5 10.1 - - + -
535F ALA* 2.9 40.2 + - + +
536F PHE* 3.7 7.6 - - - +
538F ILE* 1.3 84.3 - - + +
540F THR* 1.3 58.7 + - - +
542F ILE* 3.2 22.7 + - + +
543F SER* 2.9 26.7 + - - -
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Residues in contact with THR 540 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477F VAL* 5.7 0.2 - - - -
481F LEU* 5.2 6.5 - - - +
536F PHE* 2.9 23.6 + - + +
537F ALA* 3.1 22.4 - - + +
539F TYR* 1.3 76.8 - - - +
541F SER* 1.3 58.4 + - - +
543F SER* 3.3 8.3 + - - -
544F ILE* 2.9 44.0 + - + +
594F SER* 5.2 1.4 + - - -
598F ARG* 3.3 42.7 + - - +
1086F GLU* 5.2 2.9 - - + -
1136F PRO* 6.2 4.5 - - + -
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Residues in contact with SER 541 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537F ALA 2.9 18.4 + - - -
538F ILE* 3.6 6.3 - - - -
540F THR* 1.3 76.7 - - - +
542F ILE* 1.3 59.4 + - - +
544F ILE* 3.2 10.6 + - - +
545F PHE* 2.9 30.1 + - - +
1082F SER* 3.1 29.5 + - - -
1083F VAL* 3.5 11.9 + - - +
1086F GLU* 3.6 17.7 - - - -
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Residues in contact with ILE 542 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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473F VAL* 6.3 0.9 - - + -
477F VAL* 4.7 15.3 - - + -
538F ILE* 2.9 38.5 + - + +
539F TYR* 3.2 25.3 + - + +
541F SER* 1.3 76.5 - - - +
543F SER* 1.3 56.9 + - - +
545F PHE* 4.0 6.4 - - + +
546F MET* 2.9 37.7 + - + +
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Residues in contact with SER 543 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474F GLN* 4.2 18.0 + - - +
477F VAL* 3.9 22.2 - - - +
539F TYR 2.9 12.9 + - - -
540F THR* 3.6 11.9 - - - -
541F SER 3.2 0.2 - - - -
542F ILE* 1.3 78.9 - - - +
544F ILE* 1.3 57.2 + - - +
546F MET* 3.8 4.5 - - - +
547F ASN* 2.9 31.1 + - - +
594F SER* 3.6 23.6 + - - -
597F VAL* 5.2 3.7 - - - +
598F ARG* 6.5 1.1 - - - -
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Residues in contact with ILE 544 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540F THR* 2.9 35.1 + - + +
541F SER* 3.2 9.8 + - - +
543F SER* 1.3 75.6 - - - +
545F PHE* 1.3 64.8 + - - +
547F ASN* 3.2 7.2 - - - +
548F THR* 3.0 25.3 + - - +
594F SER* 4.1 15.5 - - - +
598F ARG* 5.8 1.8 - - - +
1078F CYS* 6.0 1.1 - - - -
1082F SER* 3.9 19.1 - - - +
1085F VAL* 5.5 7.0 - - + -
1086F GLU* 6.6 0.2 - - + -
1136F PRO* 6.1 1.8 - - + -
1137F SER* 5.9 1.6 - - - -
1140F GLU* 4.1 29.6 - - + +
1144F ARG* 3.3 25.8 - - - +
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Residues in contact with PHE 545 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541F SER 2.9 12.4 + - - +
542F ILE* 4.0 6.3 - - + +
544F ILE* 1.3 76.4 - - - +
546F MET* 1.3 70.8 + - + +
548F THR 3.7 0.2 - - - -
549F ALA* 2.8 50.8 + - + +
1075F ILE* 3.1 47.8 - - + -
1076F VAL* 5.6 0.2 - - - -
1078F CYS* 3.5 14.8 - - + -
1079F LEU* 3.4 46.7 - - + -
1082F SER* 3.4 18.6 - - - +
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Residues in contact with MET 546 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470F LEU* 3.5 25.6 - - + -
473F VAL* 3.9 29.4 - - + -
474F GLN* 4.5 3.4 - - - +
477F VAL* 6.3 0.4 - - + -
542F ILE* 2.9 26.7 + - + +
543F SER* 3.8 4.9 - - - +
545F PHE* 1.3 84.8 - - + +
547F ASN* 1.3 64.2 + - - +
549F ALA* 4.2 4.9 - - - -
550F ILE* 3.0 48.9 + - - +
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Residues in contact with ASN 547 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470F LEU* 5.5 1.1 - - - -
474F GLN* 4.9 10.4 - - - +
543F SER* 2.9 19.3 + - - +
544F ILE* 3.2 9.2 - - - +
546F MET* 1.3 79.3 - - - +
548F THR* 1.3 63.8 + - - +
550F ILE* 3.3 8.6 - - - +
551F PRO* 3.1 18.4 - - - +
587F VAL* 4.6 4.1 + - - +
590F LEU* 2.7 51.9 - - - +
591F PHE* 3.1 17.2 - - - +
594F SER* 3.4 13.6 - - - -
1144F ARG* 4.8 2.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 548 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544F ILE* 3.0 15.2 + - - +
545F PHE 3.7 0.4 - - - -
547F ASN* 1.3 74.9 + - - +
549F ALA* 1.3 57.7 + - - +
551F PRO* 3.2 20.2 - - + +
552F ILE* 4.3 7.6 - - - +
1022F LYS* 3.4 29.2 - - - +
1023F HIS* 5.3 0.9 - - - +
1078F CYS* 3.6 19.1 - - - +
1144F ARG* 3.5 29.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 549 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545F PHE* 2.8 51.8 + - + +
546F MET* 3.8 6.3 - - - +
548F THR* 1.3 76.7 - - - +
550F ILE* 1.3 67.2 + - + +
551F PRO* 3.2 2.7 - - - -
552F ILE* 3.1 27.2 - - - +
553F ALA* 3.2 8.6 + - - +
1075F ILE* 3.9 12.0 - - + +
1078F CYS* 4.9 2.0 - - - -
----------------------------------------------------------
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Residues in contact with ILE 550 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL* 4.4 20.3 - - + +
467F ILE* 4.7 10.5 - - + -
470F LEU* 3.7 31.0 - - + -
546F MET* 3.0 37.2 + - - +
547F ASN* 3.3 13.9 - - - +
549F ALA* 1.3 78.3 - - + +
551F PRO* 1.3 68.8 - - + +
553F ALA* 3.5 8.1 - - + +
554F ALA* 2.9 29.9 + - + +
587F VAL* 5.5 0.4 - - + -
590F LEU* 3.7 29.4 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547F ASN 3.1 19.3 - - - +
548F THR* 3.2 23.3 - - + +
549F ALA 3.2 0.4 - - - -
550F ILE* 1.3 97.0 - - + +
552F ILE* 1.3 60.3 + - + +
554F ALA* 3.1 6.5 + - + +
555F VAL* 2.9 35.6 + - + +
583F PHE* 5.0 8.7 - - + +
587F VAL* 4.1 25.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 552 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548F THR 4.3 7.0 - - - +
549F ALA* 3.1 26.2 - - - +
551F PRO* 1.3 76.7 - - + +
553F ALA* 1.3 75.9 + - - +
555F VAL* 3.1 14.4 - - + +
556F LEU* 3.0 26.0 + - + +
1026F LEU* 3.9 28.9 - - + -
1029F ILE* 6.2 3.4 - - + -
1071F CYS* 4.2 22.2 - - + +
1074F GLY* 5.3 5.4 - - - -
1075F ILE* 3.5 41.7 - - + +
1078F CYS* 6.6 0.2 - - + -
----------------------------------------------------------
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Residues in contact with ALA 553 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL* 4.4 14.6 - - + -
549F ALA 3.2 14.3 + - - +
550F ILE* 3.5 13.2 - - + +
552F ILE* 1.3 83.3 - - + +
554F ALA* 1.3 57.5 + - - +
556F LEU* 3.6 6.1 - - - +
557F ILE* 2.9 38.6 + - + +
1075F ILE* 5.4 4.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463F GLY 4.0 22.7 - - - +
466F VAL* 4.8 5.4 - - + +
467F ILE* 6.0 2.2 - - + +
550F ILE* 2.9 18.7 + - + +
551F PRO* 3.5 7.9 - - + +
553F ALA* 1.3 77.0 - - - +
555F VAL* 1.3 61.0 + - - +
557F ILE* 3.8 2.9 - - - +
558F THR* 2.9 33.8 + - - +
583F PHE* 4.6 17.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551F PRO* 2.9 14.8 + - + +
552F ILE* 3.1 28.3 - - + +
554F ALA* 1.3 75.3 - - - +
556F LEU* 1.3 66.1 + - + +
558F THR* 2.7 20.0 + - - -
559F PHE* 2.9 33.9 + - + -
580F LEU* 4.6 17.3 - - + -
583F PHE* 3.4 31.9 - - + -
1029F ILE* 6.2 1.1 - - + -
1067F PHE* 5.4 3.6 - - + -
1071F CYS* 4.8 7.6 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552F ILE* 3.0 19.3 + - + +
553F ALA* 3.6 6.3 - - - +
555F VAL* 1.3 79.6 - - - +
557F ILE* 1.3 74.9 + - + +
559F PHE* 3.9 0.3 - - - +
560F VAL* 2.9 47.5 + - + +
1067F PHE* 4.3 10.5 - - + -
1068F THR* 3.7 27.6 - - + +
1071F CYS* 3.7 35.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 557 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462F ILE* 3.9 26.1 - - + +
463F GLY* 3.9 13.2 - - - -
466F VAL* 4.6 12.3 - - + -
553F ALA* 2.9 21.7 + - + +
554F ALA 4.0 2.5 - - - +
556F LEU* 1.3 87.7 - - + +
558F THR* 1.3 63.6 + - - +
560F VAL* 3.8 5.6 - - + +
561F GLY* 2.9 20.6 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452F LEU* 6.1 0.7 - - + -
460F ALA 5.1 4.2 - - - +
461F LEU* 3.8 19.3 - - + +
462F ILE* 5.6 0.7 - - - +
463F GLY* 3.7 22.9 - - - +
554F ALA 2.9 18.3 + - - +
555F VAL* 2.7 26.0 + - - -
557F ILE* 1.3 76.0 - - - +
559F PHE* 1.3 68.6 + - - -
561F GLY* 2.8 20.5 + - - -
562F HIS* 3.4 13.5 + - - -
579F SER* 5.3 1.3 - - - +
583F PHE* 3.7 26.2 - - + -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456F LEU* 6.1 0.2 - - + -
555F VAL* 2.9 24.2 + - + +
556F LEU 4.1 1.3 - - - +
558F THR* 1.3 94.1 + - - +
560F VAL* 1.3 59.6 + - - +
562F HIS* 3.2 30.3 + + - +
563F VAL* 4.7 2.6 + - - +
576F ALA* 3.1 47.3 - - + -
579F SER* 4.5 10.1 - - - -
580F LEU* 3.8 24.5 - - + -
583F PHE* 5.0 1.1 - + - -
1033F LEU* 3.6 26.9 - - + -
1036F TRP* 6.0 4.7 + - - +
1067F PHE* 3.9 30.5 - + + -
----------------------------------------------------------
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Residues in contact with VAL 560 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556F LEU* 2.9 42.6 + - + +
557F ILE* 4.0 6.7 - - + +
559F PHE* 1.3 73.9 - - + +
561F GLY* 1.3 54.8 + - - +
562F HIS 3.1 2.9 - - - -
563F VAL* 2.7 46.0 + - + +
1067F PHE* 5.7 2.7 - - + -
1068F THR* 4.5 11.4 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460F ALA* 5.0 18.8 - - - +
462F ILE* 5.5 6.7 - - - -
557F ILE 2.9 11.5 + - - -
558F THR* 2.8 11.6 + - - -
560F VAL* 1.3 76.8 - - - +
562F HIS* 1.3 63.2 + - - +
563F VAL 3.0 8.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456F LEU* 5.8 6.8 + - + +
558F THR* 3.4 12.7 + - - -
559F PHE* 3.2 34.7 + + - +
561F GLY* 1.3 76.1 - - - +
563F VAL* 1.3 68.3 + - + +
575F VAL* 5.2 12.9 - - + +
576F ALA* 5.5 7.4 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il