Contacts of the helix formed by residues 514 - 562 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508G LEU* 4.2 9.6 - - + -
509G LEU* 3.6 7.7 + - + +
512G TYR* 3.2 25.1 - + + -
513G ALA* 1.3 86.6 - - - +
515G GLU* 1.3 60.1 + - - +
516G ASN 3.5 2.2 - - - -
517G ILE* 3.2 26.1 + - + +
518G PHE* 2.8 57.9 + + + -
1431G PHE* 4.7 3.4 - + - -
1438G ASN 4.6 2.2 - - - -
1439G LEU 3.9 8.7 - - - -
1441G PRO* 3.3 30.5 - - + +
1493G ARG* 3.4 47.3 - - + -
1497G ARG* 3.1 34.8 - - - +
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Residues in contact with GLU 515 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502G MET* 5.4 0.4 - - - +
506G ILE* 3.7 6.5 - - - +
509G LEU* 3.1 37.7 - - + +
510G LYS* 2.8 55.4 + - - +
513G ALA* 3.5 2.7 - - - -
514G TRP* 1.3 75.6 - - - +
516G ASN* 1.3 56.3 + - - +
517G ILE 3.2 0.9 - - - -
518G PHE 4.4 0.2 - - - +
519G ARG* 2.7 42.2 + - - +
1105G ILE* 3.6 30.6 - - + +
1325G TYR* 4.4 4.5 + - - -
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Residues in contact with ASN 516 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513G ALA 5.4 0.8 + - - -
514G TRP 3.5 0.2 - - - -
515G GLU* 1.3 76.2 - - - +
517G ILE* 1.3 61.6 + - + +
519G ARG* 3.3 27.4 + - - +
520G THR* 2.9 35.8 + - - +
1415G HIS* 5.1 16.2 + - + +
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Residues in contact with ILE 517 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513G ALA 4.4 3.6 - - - +
514G TRP* 3.2 39.7 + - + +
515G GLU 3.2 0.2 - - - -
516G ASN* 1.3 79.7 - - + +
518G PHE* 1.3 62.5 + - + +
520G THR* 3.1 11.0 - - + +
521G ARG* 2.9 30.1 + - + +
1437G PHE* 5.8 1.8 - - + -
1441G PRO* 3.6 38.6 - - + +
1442G GLU* 4.5 12.8 - - + +
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Residues in contact with PHE 518 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501G GLU* 5.8 1.1 - - - -
502G MET* 3.5 19.5 - - + -
509G LEU* 3.4 24.2 - - + -
514G TRP* 2.8 51.1 + + + +
515G GLU 4.5 0.4 - - - +
517G ILE* 1.3 78.1 - - + +
519G ARG* 1.3 57.6 + - - +
521G ARG* 3.3 8.7 + - - +
522G VAL* 2.9 34.7 + - + +
1431G PHE* 3.4 39.9 - + - -
1437G PHE* 3.5 35.4 - + - -
1441G PRO* 3.8 22.2 - - + -
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Residues in contact with ARG 519 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502G MET* 3.8 8.0 - - - +
515G GLU 2.7 25.1 + - - +
516G ASN* 3.3 29.7 + - - +
518G PHE* 1.3 78.8 - - - +
520G THR* 1.3 60.6 + - - +
522G VAL* 3.3 5.2 + - - +
523G GLU* 2.8 28.0 + - + +
1101G LEU* 4.3 12.5 - - + +
1102G ASN* 2.9 33.0 + - - +
1105G ILE* 3.6 37.1 - - + +
1106G LEU* 5.1 9.2 - - - +
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Residues in contact with THR 520 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516G ASN* 2.9 25.4 + - - +
517G ILE* 3.1 20.4 - - + +
519G ARG* 1.3 77.9 - - - +
521G ARG* 1.3 66.5 + - - +
523G GLU* 3.1 11.3 + - - +
524G THR* 2.9 29.8 + - + +
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Residues in contact with ARG 521 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494G GLU* 5.1 3.6 + - - -
497G LYS* 5.1 4.0 - - - +
498G GLN* 3.0 36.5 + - - +
501G GLU* 5.8 2.2 + - - -
517G ILE* 2.9 17.3 + - + +
518G PHE* 3.4 15.1 - - - +
519G ARG 3.3 0.2 - - - -
520G THR* 1.3 77.2 - - - +
522G VAL* 1.3 58.8 + - - +
524G THR* 2.2 34.0 + - - +
525G THR* 3.4 7.9 + - + +
1432G SER* 4.4 10.9 + - - -
1433G GLY* 5.7 1.6 - - - -
1437G PHE* 3.3 52.4 - - - -
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Residues in contact with VAL 522 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 4.2 15.5 - - + +
498G GLN* 3.4 39.9 - - + +
499G THR* 4.9 4.9 - - - +
502G MET* 3.6 20.2 - - + -
518G PHE* 2.9 22.7 + - + +
519G ARG* 3.7 5.4 - - - +
521G ARG* 1.3 72.6 - - - +
523G GLU* 1.3 60.3 + - - +
525G THR* 2.3 32.1 + - - +
526G ARG* 2.8 13.7 + - + +
1097G HIS* 5.3 1.6 - - + -
1101G LEU* 4.5 20.0 - - + -
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Residues in contact with GLU 523 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519G ARG* 2.8 18.7 + - + +
520G THR* 3.3 16.8 - - - +
522G VAL* 1.3 78.4 - - - +
524G THR* 1.3 56.4 + - + +
526G ARG* 3.3 8.8 + - - +
527G ARG* 2.8 29.5 + - - +
1101G LEU* 5.2 7.2 - - + +
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Residues in contact with THR 524 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520G THR* 2.9 23.9 + - + +
521G ARG* 2.2 33.0 + - - +
523G GLU* 1.3 77.5 - - - +
525G THR* 1.3 66.4 + - - +
527G ARG* 3.0 33.5 + - - +
528G LYS* 2.9 28.4 + - - +
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Residues in contact with THR 525 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491G TYR* 4.6 4.7 - - - +
494G GLU* 3.9 31.0 - - + +
495G ARG* 4.1 10.4 - - - +
498G GLN* 4.0 18.8 - - + +
521G ARG* 3.6 12.8 - - + +
522G VAL* 2.3 36.1 + - - +
524G THR* 1.3 84.0 + - - +
526G ARG* 1.3 57.3 + - - +
528G LYS* 3.2 10.0 + - - +
529G GLU* 2.9 29.7 + - - +
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Residues in contact with ARG 526 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 4.3 11.8 - - + +
522G VAL 2.8 19.5 + - - +
523G GLU* 3.6 9.2 - - - +
525G THR* 1.3 73.6 + - - +
527G ARG* 1.3 57.8 + - - +
529G GLU* 3.5 37.6 + - - +
530G MET* 2.8 48.3 + - + +
533G LEU* 5.8 0.8 - - - +
1093G ALA* 4.3 6.9 + - - +
1097G HIS* 3.0 60.1 + - + +
1128G CYS* 3.4 18.0 - - - -
1132G ASP* 3.3 28.7 + - - +
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Residues in contact with ARG 527 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523G GLU 2.8 16.6 + - - +
524G THR* 3.0 30.4 + - - +
526G ARG* 1.3 75.2 - - - +
528G LYS* 1.3 79.2 + - + +
530G MET* 3.2 8.6 + - + +
531G THR* 2.9 37.6 + - - +
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Residues in contact with LYS 528 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491G TYR* 3.3 43.3 - - + +
524G THR* 2.9 19.6 + - - +
525G THR* 3.2 8.9 + - - +
527G ARG* 1.3 95.8 - - + +
529G GLU* 1.3 60.5 - - - +
531G THR* 3.2 8.8 + - - +
532G SER 3.0 19.6 + - - -
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Residues in contact with GLU 529 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488G THR* 4.4 10.7 - - + +
491G TYR* 3.5 16.8 - - + +
492G SER* 3.2 35.6 + - - +
495G ARG* 3.4 34.2 + - - +
525G THR 2.9 13.9 + - - +
526G ARG* 3.5 34.8 + - - +
528G LYS* 1.3 75.8 - - - +
530G MET* 1.3 57.4 + - - +
532G SER* 3.4 2.5 + - - -
533G LEU* 2.9 37.3 + - + +
1132G ASP* 4.6 3.8 - - - +
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Residues in contact with MET 530 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526G ARG* 2.8 49.5 + - + +
527G ARG* 3.2 11.6 + - + +
529G GLU* 1.3 73.9 - - - +
531G THR* 1.3 57.2 + - - +
533G LEU* 3.5 9.8 + - - -
534G ARG* 2.8 33.7 + - + +
1090G LEU* 4.4 23.6 - - + +
1093G ALA* 4.8 2.2 - - - -
1094G LYS* 3.6 56.3 - - + +
1097G HIS* 5.4 0.4 - - + -
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Residues in contact with THR 531 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
527G ARG* 2.9 21.9 + - - +
528G LYS* 3.2 9.5 + - - +
530G MET* 1.3 77.8 - - - +
532G SER* 1.3 59.2 + - - +
534G ARG* 3.0 37.5 + - - +
535G ALA* 3.0 27.8 + - + +
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Residues in contact with SER 532 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484G ALA* 3.3 9.7 + - - +
487G SER* 3.7 7.6 - - - -
488G THR* 2.4 47.8 + - - -
491G TYR* 4.1 10.1 - - - -
528G LYS 3.0 16.1 + - - -
529G GLU 3.9 2.0 - - - -
531G THR* 1.3 76.3 - - - +
533G LEU* 1.3 58.8 + - - +
535G ALA* 3.3 7.5 + - - +
536G PHE* 2.9 26.3 + - - +
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Residues in contact with LEU 533 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488G THR* 4.0 15.2 + - + -
526G ARG* 5.8 1.3 - - - +
529G GLU* 2.9 24.8 + - + +
530G MET* 3.9 9.4 - - - +
532G SER* 1.3 76.8 - - - +
534G ARG* 1.3 57.2 + - - +
536G PHE* 3.3 17.2 - - + +
537G ALA* 2.8 30.1 + - + +
1090G LEU* 4.4 22.7 - - + -
1093G ALA* 5.7 2.7 - - + -
1132G ASP* 3.2 54.3 - - + +
1133G GLN* 4.5 8.1 - - + +
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Residues in contact with ARG 534 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530G MET* 2.8 22.0 + - - +
531G THR* 3.2 37.1 + - - +
533G LEU* 1.3 75.4 - - - +
535G ALA* 1.3 59.6 + - - +
537G ALA* 3.2 2.8 + - - +
538G ILE* 2.9 46.3 + - + +
1090G LEU* 3.4 31.2 - - + +
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Residues in contact with ALA 535 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484G ALA* 5.0 5.8 - - + -
531G THR* 3.0 12.4 + - + +
532G SER* 3.6 9.6 - - - +
534G ARG* 1.3 76.2 - - - +
536G PHE* 1.3 63.5 + - - +
538G ILE* 3.3 12.8 + - - +
539G TYR* 2.9 50.8 + - + +
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Residues in contact with PHE 536 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481G LEU* 3.5 35.3 - - + +
484G ALA* 5.0 6.0 - - + +
485G GLN* 3.1 27.6 - - - -
488G THR* 4.6 10.8 - - + +
532G SER 2.9 14.9 + - - +
533G LEU* 3.3 23.3 - - + +
535G ALA* 1.3 76.7 - - - +
537G ALA* 1.3 59.9 + - + +
539G TYR* 3.3 9.1 + - - +
540G THR* 2.9 32.5 + - + +
598G ARG* 3.3 42.4 - - + -
602G LYS* 5.3 8.5 - - + -
1132G ASP 5.9 0.2 - - - -
1133G GLN* 4.8 17.9 - - + -
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Residues in contact with ALA 537 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533G LEU* 2.8 25.6 + - + +
534G ARG 3.2 4.0 + - - +
536G PHE* 1.3 73.1 - - + +
538G ILE* 1.3 67.6 + - + +
540G THR* 3.1 12.2 - - + +
541G SER* 2.9 25.6 + - - -
1086G GLU* 3.8 21.7 - - + +
1090G LEU* 4.3 16.2 - - + -
1136G PRO* 6.5 0.9 - - + -
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Residues in contact with ILE 538 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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534G ARG* 2.9 36.4 + - + +
535G ALA* 3.5 11.7 - - - +
537G ALA* 1.3 78.3 - - + +
539G TYR* 1.3 66.3 + - + +
541G SER* 3.6 6.3 - - - -
542G ILE* 2.9 49.2 + - + +
1086G GLU* 5.4 1.1 - - - -
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Residues in contact with TYR 539 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477G VAL* 4.0 16.5 - - + +
480G LYS* 3.4 52.9 + - + +
481G LEU* 4.6 12.1 - - + -
484G ALA* 4.5 9.2 - - + -
535G ALA* 2.9 40.7 + - + +
536G PHE* 3.7 7.4 - - - +
538G ILE* 1.3 86.1 - - + +
540G THR* 1.3 57.2 - - - +
542G ILE* 3.2 22.4 + - + +
543G SER* 2.9 26.9 + - - -
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Residues in contact with THR 540 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481G LEU* 5.2 6.9 - - - +
536G PHE* 2.9 23.2 + - + +
537G ALA* 3.1 22.7 - - + +
539G TYR* 1.3 77.1 - - - +
541G SER* 1.3 58.9 + - - +
543G SER* 3.3 7.9 + - - -
544G ILE* 2.9 44.3 + - + +
594G SER* 5.2 1.7 + - - -
598G ARG* 3.3 41.3 + - - +
1086G GLU* 5.2 3.4 - - + -
1136G PRO* 6.2 4.9 - - + -
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Residues in contact with SER 541 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537G ALA 2.9 18.8 + - - -
538G ILE* 3.6 5.8 - - - -
540G THR* 1.3 77.7 - - - +
542G ILE* 1.3 60.0 + - - +
544G ILE* 3.2 10.4 + - - +
545G PHE* 2.9 31.0 + - - +
1082G SER* 3.1 29.9 + - - -
1083G VAL* 3.5 10.8 + - - +
1086G GLU* 3.6 17.7 - - - -
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Residues in contact with ILE 542 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473G VAL* 6.3 0.7 - - + -
477G VAL* 4.7 15.3 - - + -
538G ILE* 2.9 39.3 + - + +
539G TYR* 3.3 24.9 - - + +
541G SER* 1.3 76.1 - - - +
543G SER* 1.3 58.3 + - - +
545G PHE* 3.4 6.6 + - + +
546G MET* 2.9 37.6 + - + +
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Residues in contact with SER 543 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474G GLN* 4.2 17.7 + - - +
477G VAL* 3.9 23.4 - - - +
539G TYR 2.9 13.1 + - - -
540G THR* 3.6 11.9 - - - -
542G ILE* 1.3 79.5 - - - +
544G ILE* 1.3 57.1 + - - +
546G MET* 3.8 4.2 - - - +
547G ASN* 2.9 31.6 + - - +
594G SER* 3.6 22.9 + - - -
597G VAL* 5.2 3.5 - - - +
598G ARG* 6.5 1.1 - - - -
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Residues in contact with ILE 544 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540G THR* 2.9 34.4 + - + +
541G SER* 3.2 9.2 + - - +
543G SER* 1.3 76.8 - - - +
545G PHE* 1.3 62.9 + - - +
547G ASN* 3.2 7.6 - - - +
548G THR* 3.0 25.1 + - - +
594G SER* 4.1 15.5 - - - +
598G ARG* 5.8 2.2 - - - +
1078G CYS* 6.0 1.1 - - - -
1082G SER* 3.9 18.6 - - - +
1085G VAL* 5.5 6.7 - - + -
1086G GLU* 6.6 0.4 - - + -
1136G PRO* 6.1 1.6 - - + -
1137G SER* 5.9 1.6 - - - -
1140G GLU* 4.1 29.6 - - + +
1144G ARG* 3.3 26.5 - - - +
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Residues in contact with PHE 545 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541G SER 2.9 12.6 + - - +
542G ILE* 4.0 6.5 - - + +
544G ILE* 1.3 75.2 - - - +
546G MET* 1.3 70.8 + - + +
548G THR 3.3 0.3 + - - -
549G ALA* 2.8 52.1 + - + +
1075G ILE* 3.1 47.8 - - + -
1078G CYS* 3.5 14.4 - - + -
1079G LEU* 3.4 47.6 - - + -
1082G SER* 3.4 18.8 - - - +
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Residues in contact with MET 546 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470G LEU* 3.5 25.1 - - + -
473G VAL* 3.9 28.9 - - + -
474G GLN* 4.4 4.3 - - - +
477G VAL* 6.3 0.7 - - + -
542G ILE* 2.9 25.9 + - + +
543G SER* 3.8 4.9 - - - +
545G PHE* 1.3 84.6 - - + +
547G ASN* 1.3 63.4 + - - +
549G ALA* 4.2 5.4 - - - -
550G ILE* 3.0 49.6 + - - +
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Residues in contact with ASN 547 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470G LEU* 5.5 1.3 - - - -
474G GLN* 4.9 10.0 - - - +
543G SER 2.9 20.0 + - - +
544G ILE* 3.2 9.2 - - - +
546G MET* 1.3 78.6 - - - +
548G THR* 1.3 63.4 + - - +
550G ILE* 3.3 9.2 - - - +
551G PRO* 3.1 18.5 - - - +
587G VAL* 4.6 3.9 + - - +
590G LEU* 2.7 51.4 - - - +
591G PHE* 3.1 16.3 - - - +
594G SER* 3.4 14.8 - - - -
1144G ARG* 4.8 3.1 + - - +
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Residues in contact with THR 548 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 3.0 15.2 + - - +
547G ASN* 1.3 74.2 - - - +
549G ALA* 1.3 57.3 + - - +
551G PRO* 3.2 20.6 - - + +
552G ILE* 4.3 7.4 - - - +
1022G LYS* 3.4 29.6 - - - +
1023G HIS* 5.3 0.7 - - - +
1078G CYS* 3.6 18.7 - - - +
1144G ARG* 3.5 29.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 549 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545G PHE* 2.8 51.3 + - + +
546G MET* 3.8 5.4 - - - +
547G ASN 3.1 0.2 - - - -
548G THR* 1.3 75.9 - - - +
550G ILE* 1.3 67.1 + - + +
551G PRO* 3.2 2.5 - - - -
552G ILE* 3.1 26.8 - - - +
553G ALA* 3.2 8.0 + - - +
1075G ILE* 3.9 12.2 - - + +
1078G CYS* 4.9 2.0 - - - -
----------------------------------------------------------
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Residues in contact with ILE 550 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466G VAL* 4.4 19.2 - - + +
467G ILE* 4.7 10.8 - - + -
470G LEU* 3.7 30.3 - - + -
546G MET* 3.0 37.2 + - - +
547G ASN* 3.3 13.9 - - - +
549G ALA* 1.3 78.3 - - - +
551G PRO* 1.3 69.6 - - + +
553G ALA* 3.5 8.2 - - + +
554G ALA* 2.9 29.7 + - + +
587G VAL* 5.5 0.4 - - + -
590G LEU* 3.7 29.4 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547G ASN 3.1 19.1 - - - +
548G THR* 3.2 24.2 - - + +
549G ALA 3.2 0.2 - - - -
550G ILE* 1.3 97.6 - - + +
552G ILE* 1.3 59.2 + - + +
554G ALA* 3.1 6.8 + - + +
555G VAL* 2.9 36.3 + - + +
583G PHE* 5.0 8.7 - - + +
587G VAL* 4.1 26.0 - - + -
----------------------------------------------------------
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Residues in contact with ILE 552 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548G THR 4.3 6.3 - - - +
549G ALA* 3.1 27.8 - - - +
551G PRO* 1.3 77.1 - - + +
553G ALA* 1.3 75.9 + - - +
555G VAL* 3.1 13.9 - - + +
556G LEU* 3.0 26.0 + - + +
1026G LEU* 3.9 29.6 - - + -
1029G ILE* 6.2 3.4 - - + -
1071G CYS* 4.2 22.5 - - + +
1074G GLY* 5.3 4.9 - - - -
1075G ILE* 3.5 42.0 - - + +
----------------------------------------------------------
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Residues in contact with ALA 553 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466G VAL* 4.4 14.4 - - + -
549G ALA 3.2 14.3 + - - +
550G ILE* 3.5 13.7 - - + +
551G PRO 3.2 0.2 - - - -
552G ILE* 1.3 82.6 - - + +
554G ALA* 1.3 57.4 + - - +
556G LEU* 3.6 6.6 - - - +
557G ILE* 2.9 38.7 + - + +
1075G ILE* 5.4 5.6 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463G GLY 4.0 22.9 - - - +
466G VAL* 4.8 6.0 - - + +
467G ILE* 6.0 2.5 - - + +
550G ILE* 2.9 18.5 + - + +
551G PRO* 3.1 8.0 + - + +
553G ALA* 1.3 76.0 - - - +
555G VAL* 1.3 61.6 + - - +
557G ILE* 3.9 2.8 - - - +
558G THR* 2.9 33.8 + - - +
583G PHE* 4.6 16.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551G PRO* 2.9 14.6 + - + +
552G ILE* 3.1 27.1 - - + +
554G ALA* 1.3 75.5 - - - +
556G LEU* 1.3 67.8 + - + +
558G THR* 2.7 20.3 + - - -
559G PHE* 2.9 34.8 + - + -
580G LEU* 4.6 16.4 - - + -
583G PHE* 3.4 32.5 - - + -
1029G ILE* 6.2 0.9 - - + -
1067G PHE* 5.4 2.9 - - + -
1071G CYS* 4.8 7.9 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G ILE* 3.0 19.5 + - + +
553G ALA* 3.6 6.7 - - - +
555G VAL* 1.3 80.0 - - - +
557G ILE* 1.3 73.9 + - + +
559G PHE* 4.1 0.3 - - - +
560G VAL* 2.9 48.8 + - + +
1067G PHE* 4.3 10.1 - - + -
1068G THR* 3.7 26.2 - - + +
1071G CYS* 3.7 37.0 - - + -
1072G SER 5.7 0.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 557 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462G ILE* 3.9 25.3 - - + +
463G GLY* 3.9 12.8 - - - -
466G VAL* 4.6 12.3 - - + -
553G ALA* 2.9 21.8 + - + +
554G ALA* 4.0 2.9 - - - +
556G LEU* 1.3 86.6 - - + +
558G THR* 1.3 64.9 + - - +
560G VAL* 3.8 5.4 - - + +
561G GLY* 2.9 21.1 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452G LEU* 6.1 0.2 - - + -
460G ALA 5.1 4.4 - - - +
461G LEU* 3.8 19.3 - - + +
462G ILE* 5.6 0.7 - - - +
463G GLY* 3.7 22.4 - - - +
554G ALA 2.9 18.5 + - - +
555G VAL* 2.7 26.0 + - - -
557G ILE* 1.3 73.9 - - - +
559G PHE* 1.3 68.4 + - - -
561G GLY* 2.8 20.9 + - - -
562G HIS* 3.4 12.9 + - - -
579G SER* 5.3 1.8 - - - -
583G PHE* 3.7 26.5 - - + -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456G LEU* 6.1 0.4 - - + -
555G VAL* 2.9 24.0 + - + +
556G LEU 4.1 1.8 - - - +
558G THR* 1.3 95.3 + - - +
560G VAL* 1.3 58.8 + - + +
562G HIS* 3.2 30.2 + + - +
563G VAL* 4.7 2.9 + - - +
576G ALA* 3.1 47.1 - - + -
579G SER* 4.5 10.3 - - - -
580G LEU* 3.8 24.2 - - + -
583G PHE* 5.0 0.9 - + - -
1033G LEU* 3.6 26.7 - - + -
1036G TRP* 6.0 4.8 + - + +
1067G PHE* 3.9 28.9 - + + -
----------------------------------------------------------
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Residues in contact with VAL 560 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556G LEU* 2.9 43.3 + - + +
557G ILE* 4.0 6.3 - - + +
559G PHE* 1.3 73.3 - - + +
561G GLY* 1.3 56.0 + - - +
562G HIS 3.1 2.7 - - - -
563G VAL* 2.7 47.1 + - + +
1067G PHE* 5.7 2.5 - - + -
1068G THR* 4.5 11.2 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460G ALA* 5.0 17.8 - - - +
462G ILE* 5.5 6.7 - - - -
557G ILE 2.9 11.7 + - - -
558G THR* 2.8 12.3 + - - -
560G VAL* 1.3 75.7 - - - +
562G HIS* 1.3 62.5 + - - +
563G VAL 3.0 8.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456G LEU* 5.8 7.3 - - + +
558G THR* 3.4 12.9 + - - -
559G PHE* 3.2 36.3 + + - +
560G VAL 3.1 0.4 + - - -
561G GLY* 1.3 75.5 - - - +
563G VAL* 1.3 68.8 + - + +
575G VAL* 5.2 12.1 - - + +
576G ALA* 5.5 7.0 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il