Contacts of the helix formed by residues 514 - 562 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508H LEU* 4.2 9.9 - - + -
509H LEU* 3.6 7.4 + - + +
512H TYR* 3.2 23.6 - + + -
513H ALA* 1.3 88.2 - - - +
515H GLU* 1.3 60.3 + - - +
516H ASN 3.5 2.0 - - - -
517H ILE* 3.2 25.0 + - + +
518H PHE* 2.8 56.8 + + + -
1431H PHE* 4.7 2.9 - + - -
1438H ASN 4.6 2.7 - - - -
1439H LEU 3.9 8.3 - - - -
1441H PRO* 3.3 30.9 - - + +
1493H ARG* 3.4 48.2 - - + -
1497H ARG* 3.1 35.3 - - + +
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Residues in contact with GLU 515 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502H MET* 6.1 0.2 - - - -
506H ILE* 3.7 6.7 - - - +
509H LEU* 3.1 37.4 - - + +
510H LYS* 2.8 56.6 + - - +
513H ALA* 3.5 3.3 - - - -
514H TRP* 1.3 74.3 - - - +
516H ASN* 1.3 57.9 + - - +
517H ILE 3.2 0.9 - - - -
518H PHE 4.4 0.7 - - - +
519H ARG* 2.7 42.6 + - - +
1105H ILE* 3.6 30.8 - - + +
1325H TYR* 4.4 4.3 + - - -
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Residues in contact with ASN 516 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513H ALA 5.4 0.8 + - - -
514H TRP 3.5 0.2 - - - -
515H GLU* 1.3 77.4 - - - +
517H ILE* 1.3 62.0 + - + +
519H ARG* 3.3 28.5 + - - +
520H THR* 2.9 35.7 + - - +
1415H HIS* 5.1 16.8 + - + +
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Residues in contact with ILE 517 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513H ALA 4.4 3.4 - - - +
514H TRP* 3.2 38.8 + - + +
515H GLU 3.2 0.6 - - - -
516H ASN* 1.3 79.6 - - + +
518H PHE* 1.3 63.8 + - + +
520H THR* 3.1 11.2 - - + +
521H ARG* 2.9 28.9 + - + +
1437H PHE* 5.8 1.3 - - + -
1441H PRO* 3.6 40.2 - - + +
1442H GLU* 4.5 11.9 - - + +
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Residues in contact with PHE 518 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501H GLU* 5.8 1.1 - - - -
502H MET* 3.5 18.8 - - + -
509H LEU* 3.4 25.1 - - + -
514H TRP* 2.8 49.8 + + + +
515H GLU 4.5 0.2 - - - +
517H ILE* 1.3 75.4 - - + +
519H ARG* 1.3 57.8 + - - +
521H ARG* 3.3 8.1 + - - +
522H VAL* 2.9 35.0 + - + +
1431H PHE* 3.4 40.2 - + - -
1437H PHE* 3.5 35.7 - + - -
1441H PRO* 3.8 22.4 - - + -
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Residues in contact with ARG 519 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502H MET* 3.8 8.4 - - - +
515H GLU 2.7 24.3 + - - +
516H ASN* 3.3 29.8 + - - +
518H PHE* 1.3 78.2 - - - +
520H THR* 1.3 60.4 + - - +
522H VAL* 3.3 6.0 + - - +
523H GLU* 2.8 28.3 + - + +
1098H ARG* 6.3 0.2 - - - +
1101H LEU* 4.3 11.3 - - + +
1102H ASN* 2.9 32.0 + - - +
1105H ILE* 3.6 36.7 - - + +
1106H LEU* 5.1 9.2 - - - +
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Residues in contact with THR 520 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516H ASN* 2.9 23.4 + - - +
517H ILE* 3.1 20.2 - - + +
519H ARG* 1.3 78.5 - - - +
521H ARG* 1.3 66.8 + - - +
523H GLU* 3.1 10.8 + - - +
524H THR* 2.9 28.9 + - - +
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Residues in contact with ARG 521 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494H GLU* 5.1 4.2 + - - -
497H LYS* 5.1 3.6 - - - +
498H GLN* 3.0 35.8 + - - +
501H GLU* 5.8 2.0 + - - -
517H ILE* 2.9 15.7 + - + +
518H PHE* 3.4 14.9 - - - +
520H THR* 1.3 79.0 - - - +
522H VAL* 1.3 58.6 + - - +
524H THR* 2.2 34.4 + - - +
525H THR* 3.4 7.5 + - + +
1432H SER* 4.4 11.3 + - - -
1433H GLY* 5.7 1.6 - - - -
1437H PHE* 3.3 52.8 - - - -
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Residues in contact with VAL 522 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 4.2 15.9 - - + +
498H GLN* 3.4 39.7 - - + +
499H THR* 5.1 4.7 - - - +
502H MET* 3.6 21.3 - - + -
518H PHE* 2.9 21.6 + - + +
519H ARG* 3.7 5.4 - - - +
521H ARG* 1.3 72.0 - - - +
523H GLU* 1.3 59.7 + - - +
525H THR* 2.3 31.6 + - - +
526H ARG* 2.8 13.5 + - + +
1097H HIS* 5.3 1.1 - - + -
1101H LEU* 4.5 20.4 - - + -
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Residues in contact with GLU 523 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519H ARG* 2.8 18.4 + - + +
520H THR* 3.1 17.4 + - - +
522H VAL* 1.3 77.4 - - - +
524H THR* 1.3 57.5 + - + +
526H ARG* 3.6 8.6 - - - +
527H ARG* 2.8 29.3 + - - +
1101H LEU* 5.2 7.4 - - + +
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Residues in contact with THR 524 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520H THR* 2.9 23.5 + - + +
521H ARG* 2.2 33.6 + - - +
523H GLU* 1.3 77.4 - - - +
525H THR* 1.3 67.3 + - - +
527H ARG* 3.0 33.0 + - - +
528H LYS* 2.9 28.9 + - - +
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Residues in contact with THR 525 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H TYR* 4.6 4.3 - - - +
494H GLU* 3.9 30.3 - - + +
495H ARG* 4.1 10.4 - - - +
498H GLN* 4.0 19.8 - - + +
521H ARG* 3.6 12.6 - - + +
522H VAL* 2.3 35.9 + - - +
524H THR* 1.3 83.4 + - - +
526H ARG* 1.3 58.2 + - - +
528H LYS* 3.2 10.3 + - - +
529H GLU* 2.9 28.8 + - - +
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Residues in contact with ARG 526 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 4.3 11.7 - - + +
522H VAL 2.8 19.9 + - - +
523H GLU* 3.6 9.2 - - - +
525H THR* 1.3 74.6 + - - +
527H ARG* 1.3 57.6 + - - +
529H GLU* 3.5 38.0 + - - +
530H MET* 2.7 49.7 + - + +
533H LEU* 5.8 1.0 - - - +
1093H ALA* 4.3 7.1 + - - +
1097H HIS* 3.0 59.7 + - + +
1128H CYS* 3.4 17.8 - - - -
1132H ASP* 3.3 28.3 + - - +
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Residues in contact with ARG 527 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523H GLU 2.8 17.0 + - - +
524H THR* 3.0 31.2 + - - +
526H ARG* 1.3 75.4 - - - +
528H LYS* 1.3 79.6 + - + +
530H MET* 3.2 8.3 + - + +
531H THR* 2.9 37.8 + - - +
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Residues in contact with LYS 528 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491H TYR* 3.3 41.5 - - + +
524H THR* 2.9 18.9 + - - +
525H THR* 3.5 9.4 - - - +
527H ARG* 1.3 96.7 - - + +
529H GLU* 1.3 62.4 + - - +
531H THR* 3.2 8.6 + - - +
532H SER* 3.0 19.1 + - - -
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Residues in contact with GLU 529 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR* 4.4 10.9 - - + +
491H TYR* 3.5 16.6 - - + +
492H SER* 3.2 36.7 + - - +
495H ARG* 3.4 34.7 + - - +
525H THR 2.9 16.0 + - - +
526H ARG* 3.5 32.6 + - - +
528H LYS* 1.3 75.2 - - - +
530H MET* 1.3 57.6 + - - +
532H SER* 3.4 2.5 + - - -
533H LEU* 2.9 37.8 + - + +
1132H ASP* 4.6 4.3 - - - +
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Residues in contact with MET 530 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526H ARG* 2.7 49.1 + - + +
527H ARG* 3.4 11.7 - - + +
529H GLU* 1.3 73.5 - - - +
531H THR* 1.3 57.3 + - - +
533H LEU* 3.7 9.9 - - - -
534H ARG* 2.8 33.3 + - + +
1090H LEU* 4.4 23.7 - - + +
1093H ALA* 4.8 2.7 - - + -
1094H LYS* 3.6 55.0 - - + +
1097H HIS* 5.5 0.9 - - + -
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Residues in contact with THR 531 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
527H ARG* 2.9 23.6 + - - +
528H LYS* 3.2 10.2 + - - +
530H MET* 1.3 77.0 - - - +
532H SER* 1.3 57.7 + - - +
534H ARG* 3.0 38.5 + - - +
535H ALA* 3.0 28.0 + - + +
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Residues in contact with SER 532 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484H ALA* 3.4 9.9 + - - +
487H SER* 3.7 7.5 - - - -
488H THR* 2.4 47.3 + - - -
491H TYR* 4.1 10.1 - - - -
528H LYS 3.0 15.8 + - - -
529H GLU 3.9 2.7 - - - -
531H THR* 1.3 77.1 - - - +
533H LEU* 1.3 56.7 - - - +
535H ALA* 3.3 8.0 + - - +
536H PHE* 2.9 26.3 + - - +
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Residues in contact with LEU 533 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR* 4.0 16.4 + - + -
526H ARG* 5.8 1.1 - - - +
529H GLU* 2.9 23.7 + - + +
530H MET* 3.9 10.3 - - - +
532H SER* 1.3 75.9 - - - +
534H ARG* 1.3 56.6 + - - +
536H PHE* 3.3 16.4 - - + +
537H ALA* 2.8 30.3 + - + +
1090H LEU* 4.4 22.7 - - + -
1093H ALA* 5.7 1.6 - - + -
1132H ASP* 3.2 54.1 - - + +
1133H GLN* 4.5 8.3 - - + +
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Residues in contact with ARG 534 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530H MET* 2.8 21.6 + - - +
531H THR* 3.0 38.1 + - - +
533H LEU* 1.3 75.3 - - - +
535H ALA* 1.3 60.5 + - - +
537H ALA* 3.2 2.4 + - - +
538H ILE* 2.9 45.9 + - + +
1090H LEU* 3.4 31.2 - - + -
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Residues in contact with ALA 535 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484H ALA* 5.0 6.1 - - + -
531H THR 3.0 11.5 + - - +
532H SER* 3.6 9.9 - - - +
534H ARG* 1.3 75.8 - - - +
536H PHE* 1.3 63.2 + - - +
538H ILE* 3.3 12.3 + - - +
539H TYR* 2.9 50.7 + - + +
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Residues in contact with PHE 536 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 3.5 35.1 - - + +
484H ALA* 5.0 6.8 - - + +
485H GLN* 3.1 27.4 - - - -
488H THR* 4.6 10.3 - - + +
532H SER 2.9 14.7 + - - +
533H LEU* 3.3 22.9 - - + +
535H ALA* 1.3 76.6 - - - +
537H ALA* 1.3 63.2 + - + +
539H TYR* 3.3 8.9 + - - +
540H THR* 2.9 32.5 + - + +
598H ARG* 3.3 43.3 - - + -
602H LYS* 5.3 8.3 - - + -
1133H GLN* 4.8 18.6 - - + -
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Residues in contact with ALA 537 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533H LEU* 2.8 25.4 + - + +
534H ARG 3.2 4.2 + - - +
536H PHE* 1.3 73.0 - - + +
538H ILE* 1.3 67.2 + - + +
540H THR* 3.1 12.3 - - + +
541H SER* 2.9 25.3 + - - -
1086H GLU* 3.8 22.0 - - + +
1090H LEU* 4.3 16.4 - - + -
1136H PRO* 6.5 1.3 - - + -
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Residues in contact with ILE 538 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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534H ARG* 2.9 37.3 + - + +
535H ALA* 3.5 12.1 - - + +
537H ALA* 1.3 76.6 - - + +
539H TYR* 1.3 65.6 + - + +
541H SER* 3.3 6.0 + - - -
542H ILE* 2.9 49.6 + - + +
1086H GLU* 5.4 1.1 - - - -
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Residues in contact with TYR 539 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477H VAL* 4.0 15.2 - - + +
480H LYS* 3.4 53.3 + - + +
481H LEU* 4.6 10.8 - - + -
484H ALA* 4.5 9.4 - - + -
535H ALA* 2.9 41.5 + - + +
536H PHE* 3.7 7.9 - - - +
538H ILE* 1.3 85.6 - - + +
540H THR* 1.3 59.3 + - - +
542H ILE* 3.2 21.8 + - + +
543H SER* 2.9 27.4 + - - -
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Residues in contact with THR 540 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 5.2 7.1 - - - +
536H PHE* 2.9 23.7 + - + +
537H ALA* 3.1 22.9 - - + +
539H TYR* 1.3 77.2 - - - +
541H SER* 1.3 58.3 + - - +
543H SER* 3.3 8.8 + - - -
544H ILE* 2.9 42.5 + - + +
594H SER* 5.2 1.7 + - - -
598H ARG* 3.3 41.5 + - - +
1086H GLU* 5.2 3.4 - - + -
1136H PRO* 6.2 4.3 - - + -
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Residues in contact with SER 541 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537H ALA 2.9 18.9 + - - -
538H ILE* 3.6 6.3 - - - -
540H THR* 1.3 75.9 - - - +
542H ILE* 1.3 60.2 + - - +
544H ILE* 3.2 11.0 + - - +
545H PHE* 2.9 30.5 + - - +
1082H SER* 3.1 29.8 + - - -
1083H VAL* 3.5 11.6 + - - +
1086H GLU* 3.6 18.2 - - - -
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Residues in contact with ILE 542 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473H VAL* 6.3 0.9 - - + -
477H VAL* 4.7 15.3 - - + -
538H ILE* 2.9 38.5 + - + +
539H TYR* 3.3 24.7 - - + +
541H SER* 1.3 77.5 - - - +
543H SER* 1.3 57.4 + - - +
545H PHE* 3.9 6.2 - - + +
546H MET* 2.9 37.8 + - + +
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Residues in contact with SER 543 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN* 4.2 17.2 + - - +
477H VAL* 3.9 22.5 - - - +
539H TYR 2.9 12.9 + - - -
540H THR* 3.6 12.3 - - - -
542H ILE* 1.3 77.7 - - - +
544H ILE* 1.3 56.7 + - - +
546H MET* 3.4 5.0 + - - +
547H ASN* 2.9 31.8 + - - +
594H SER* 3.6 23.8 + - - -
597H VAL* 5.2 3.2 - - - +
598H ARG* 6.5 0.9 - - - -
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Residues in contact with ILE 544 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540H THR* 2.9 35.5 + - + +
541H SER* 3.2 9.2 + - - +
543H SER* 1.3 75.5 - - - +
545H PHE* 1.3 63.7 + - - +
547H ASN* 3.2 7.8 - - - +
548H THR* 3.0 24.6 + - - +
594H SER* 4.1 15.0 - - - +
598H ARG* 5.8 2.0 - - - +
1078H CYS* 6.0 0.9 - - - -
1082H SER* 3.9 19.5 - - - +
1085H VAL* 5.5 6.1 - - + -
1136H PRO* 6.1 1.3 - - + -
1137H SER* 5.9 2.0 - - - -
1140H GLU* 4.1 29.6 - - + +
1144H ARG* 3.3 26.7 - - - +
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Residues in contact with PHE 545 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541H SER 2.9 12.8 + - - +
542H ILE* 4.0 5.8 - - + +
544H ILE* 1.3 76.0 - - - +
546H MET* 1.3 70.9 + - + +
548H THR 3.3 0.9 + - - -
549H ALA* 2.8 52.2 + - + +
1075H ILE* 3.1 47.3 - - + -
1078H CYS* 3.5 15.0 - - + -
1079H LEU* 3.4 47.8 - - + -
1082H SER* 3.4 18.6 + - - +
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Residues in contact with MET 546 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470H LEU* 3.5 24.0 - - + -
473H VAL* 3.9 30.3 - - + -
474H GLN* 4.4 3.6 - - - +
477H VAL* 6.3 0.7 - - + -
542H ILE* 2.9 25.9 + - + +
543H SER* 3.8 5.4 - - - +
545H PHE* 1.3 85.3 - - + +
547H ASN* 1.3 65.7 + - - +
549H ALA* 4.2 4.5 - - - -
550H ILE* 3.0 48.3 + - - +
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Residues in contact with ASN 547 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470H LEU* 5.5 0.9 - - - -
474H GLN* 4.9 9.8 - - - +
543H SER* 2.9 19.7 + - - +
544H ILE* 3.2 9.1 - - - +
546H MET* 1.3 79.5 - - - +
548H THR* 1.3 62.6 + - - +
550H ILE* 3.3 8.3 - - - +
551H PRO* 3.1 18.2 - - - +
587H VAL* 4.6 5.0 + - - +
590H LEU* 2.7 52.3 - - - +
591H PHE* 3.1 16.5 - - - +
594H SER* 3.4 14.2 - - - -
1144H ARG* 4.8 2.7 + - - +
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Residues in contact with THR 548 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544H ILE* 3.0 15.4 + - - +
545H PHE 3.7 0.2 - - - -
547H ASN* 1.3 75.3 - - - +
549H ALA* 1.3 57.8 + - - +
551H PRO* 3.2 20.4 - - + +
552H ILE* 4.3 7.4 - - - +
1022H LYS* 3.4 29.4 - - - +
1023H HIS* 5.3 1.1 - - - +
1078H CYS* 3.6 17.3 - - - +
1144H ARG* 3.5 29.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 549 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545H PHE* 2.8 51.5 + - + +
546H MET* 3.8 5.6 - - - +
547H ASN 3.1 0.2 - - - -
548H THR* 1.3 76.7 - - - +
550H ILE* 1.3 67.4 + - + +
551H PRO* 3.2 2.9 - - - -
552H ILE* 3.1 26.6 - - - +
553H ALA* 3.2 8.2 + - - +
1075H ILE* 3.9 11.6 - - + +
1078H CYS* 4.9 2.2 - - - -
----------------------------------------------------------
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Residues in contact with ILE 550 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL* 4.4 20.6 - - + +
467H ILE* 4.7 11.4 - - + -
470H LEU* 3.7 29.4 - - + -
546H MET* 3.0 37.8 + - - +
547H ASN 3.3 14.4 - - - +
549H ALA* 1.3 78.4 - - + +
551H PRO* 1.3 68.0 - - + +
553H ALA* 3.4 7.7 + - + +
554H ALA* 2.9 29.9 + - + +
587H VAL* 5.5 0.4 - - + -
590H LEU* 3.7 29.8 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547H ASN 3.1 19.3 - - - +
548H THR* 3.2 23.8 - - + +
549H ALA 3.2 0.4 - - - -
550H ILE* 1.3 97.4 - - + +
552H ILE* 1.3 60.4 + - + +
554H ALA* 3.1 6.8 + - + +
555H VAL* 2.9 36.4 + - + +
583H PHE* 5.0 8.5 - - + +
587H VAL* 4.1 25.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 552 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548H THR 4.3 6.5 - - - +
549H ALA* 3.1 27.6 - - - +
551H PRO* 1.3 76.5 - - + +
553H ALA* 1.3 76.1 + - - +
555H VAL* 3.1 14.5 - - + +
556H LEU* 3.0 26.6 + - + +
1026H LEU* 3.9 29.8 - - + -
1029H ILE* 6.2 3.4 - - + -
1071H CYS* 4.2 22.2 - - + +
1074H GLY* 5.3 4.5 - - - -
1075H ILE* 3.5 41.1 - - + +
----------------------------------------------------------
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Residues in contact with ALA 553 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL* 4.4 14.6 - - + -
549H ALA 3.2 14.5 + - - +
550H ILE* 3.5 14.1 - - + +
552H ILE* 1.3 84.0 - - + +
554H ALA* 1.3 55.1 + - - +
556H LEU* 3.3 6.3 + - - +
557H ILE* 2.9 39.9 + - + +
1075H ILE* 5.4 4.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463H GLY 4.0 22.2 - - - +
466H VAL* 4.8 5.4 - - + +
467H ILE* 6.0 2.2 - - + +
550H ILE* 2.9 18.6 + - + +
551H PRO* 3.1 8.0 + - + +
553H ALA* 1.3 77.2 - - - +
555H VAL* 1.3 59.8 + - - +
557H ILE* 3.3 3.2 + - - +
558H THR* 2.9 33.6 + - - +
583H PHE* 4.6 16.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551H PRO* 2.9 13.9 + - + +
552H ILE* 3.1 28.0 - - + +
554H ALA* 1.3 75.0 - - - +
556H LEU* 1.3 67.5 + - + +
558H THR* 2.7 20.2 + - - -
559H PHE* 2.9 34.3 + - + -
580H LEU* 4.6 18.2 - - + -
583H PHE* 3.4 32.3 - - + -
1029H ILE* 6.2 1.1 - - + -
1067H PHE* 5.4 3.1 - - + -
1071H CYS* 4.8 8.1 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552H ILE* 3.0 18.8 + - + +
553H ALA* 3.6 7.0 - - - +
555H VAL* 1.3 79.6 - - - +
557H ILE* 1.3 73.3 + - + +
559H PHE* 3.8 0.3 - - - +
560H VAL* 2.9 47.0 + - + +
1067H PHE* 4.3 9.6 - - + -
1068H THR* 3.7 26.7 - - + +
1071H CYS* 3.7 35.4 - - + -
1072H SER 5.7 0.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 557 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE* 3.9 25.4 - - + +
463H GLY* 3.9 12.8 - - - -
466H VAL* 4.6 12.8 - - + -
553H ALA* 2.9 22.6 + - + +
554H ALA* 4.0 2.7 - - - +
556H LEU* 1.3 87.1 - - + +
558H THR* 1.3 65.3 + - - +
560H VAL* 3.5 6.3 + - + +
561H GLY* 2.9 20.6 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452H LEU* 6.1 0.2 - - + -
460H ALA 5.1 4.4 - - - +
461H LEU* 3.8 20.0 - - + +
462H ILE* 5.6 0.9 - - - +
463H GLY* 3.7 22.7 - - - +
554H ALA 2.9 18.0 + - - +
555H VAL* 2.7 25.8 + - - -
557H ILE* 1.3 75.4 - - - +
559H PHE* 1.3 68.6 + - - -
561H GLY* 2.8 20.3 + - - -
562H HIS* 3.4 13.0 + - - -
579H SER* 5.3 1.8 - - - +
583H PHE* 3.7 26.9 - - + -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 6.1 0.4 - - + -
555H VAL* 2.9 23.3 + - + +
556H LEU 4.1 1.3 - - - +
558H THR* 1.3 95.6 + - - +
560H VAL* 1.3 59.7 + - - +
562H HIS* 3.2 30.9 + + + +
563H VAL* 4.7 2.9 + - - +
576H ALA* 3.1 47.8 - - + -
579H SER* 4.5 9.9 - - - -
580H LEU* 3.8 24.7 - - + -
583H PHE* 5.0 0.9 - + - -
1033H LEU* 3.6 27.4 - - + -
1036H TRP* 6.0 4.6 + - - +
1067H PHE* 3.9 31.0 - + + -
----------------------------------------------------------
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Residues in contact with VAL 560 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556H LEU* 2.9 43.5 + - + +
557H ILE* 4.0 6.5 - - + +
559H PHE* 1.3 73.9 - - + +
561H GLY* 1.3 55.4 + - - +
562H HIS 3.1 2.9 - - - -
563H VAL* 2.7 46.4 + - + +
1067H PHE* 5.7 2.5 - - + -
1068H THR* 4.5 11.9 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460H ALA* 5.0 18.1 - - - +
462H ILE* 5.5 6.7 - - - -
557H ILE 2.9 12.5 + - - -
558H THR* 2.8 12.9 + - - -
560H VAL* 1.3 76.8 - - - +
562H HIS* 1.3 62.0 + - - +
563H VAL 3.0 9.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 5.8 7.0 + - + +
558H THR* 3.4 13.3 + - - -
559H PHE* 3.2 36.3 + + + +
560H VAL 3.1 0.4 + - - -
561H GLY* 1.3 75.1 - - - +
563H VAL* 1.3 69.5 + - + +
575H VAL* 5.2 12.7 - - + +
576H ALA* 5.5 6.7 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il