Contacts of the helix formed by residues 574 - 615 (chain E) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 574 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321E PHE* 3.1 31.4 - - - -
324E VAL* 3.5 41.0 - - - +
325E ASP* 4.4 8.5 - - - +
573E PRO* 1.3 81.3 - - - +
575E VAL* 1.3 69.0 + - - +
577E PHE* 3.4 3.1 + - - +
578E ALA* 2.8 28.0 + - - +
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Residues in contact with VAL 575 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321E PHE* 4.1 13.9 - - + -
456E LEU* 3.0 49.1 - - + +
562E HIS* 5.2 11.4 - - + +
573E PRO* 3.5 28.0 - - + -
574E SER* 1.3 78.1 + - - +
576E ALA* 1.3 73.8 + - + +
579E SER 3.0 19.8 + - - -
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Residues in contact with ALA 576 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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456E LEU* 4.8 1.6 - - - -
559E PHE* 3.1 41.4 - - + -
562E HIS* 5.5 6.5 - - + -
573E PRO* 4.4 3.9 + - + +
574E SER 3.4 0.6 - - - -
575E VAL* 1.3 86.5 - - + +
577E PHE* 1.3 58.5 + - - +
579E SER* 3.3 1.6 + - - -
580E LEU 2.9 23.0 + - - -
1033E LEU* 4.8 11.0 - - + -
1036E TRP* 5.6 4.5 - - + -
1037E THR* 5.0 13.0 - - + -
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Residues in contact with PHE 577 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 4.6 5.2 - - + -
324E VAL* 5.8 2.7 - - + -
573E PRO 4.2 10.0 + - - +
574E SER* 3.4 5.7 + - - +
575E VAL 3.3 0.4 - - - -
576E ALA* 1.3 78.0 - - - +
578E ALA* 1.3 61.9 + - - +
580E LEU* 3.6 30.1 - - + +
581E SER* 2.8 36.9 + - - -
1030E ASP* 5.4 4.3 - - + -
1033E LEU* 4.8 11.0 - - + -
1034E ALA* 6.2 2.0 - - - -
1037E THR* 5.4 5.2 - - + -
1278E GLY* 5.1 5.6 - - - +
1281E GLY* 2.9 34.8 - - - -
1282E LEU* 3.3 36.3 - - + -
1285E THR* 3.0 30.7 - - + -
1286E TYR* 4.7 7.9 - + - -
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Residues in contact with ALA 578 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317E PRO* 4.2 10.2 - - + +
320E ILE* 4.7 7.4 - - + -
321E PHE* 4.1 30.3 - - + +
324E VAL* 6.2 0.2 - - + -
455E ILE* 6.2 0.2 - - + -
456E LEU* 3.7 15.3 - - + -
574E SER* 2.8 20.1 + - - +
577E PHE* 1.3 78.9 - - - +
579E SER* 1.3 62.1 + - - +
581E SER* 3.2 10.0 + - - -
582E LEU* 3.0 22.0 + - - +
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Residues in contact with SER 579 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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452E LEU* 3.8 13.9 - - - +
455E ILE* 6.1 1.1 - - - -
456E LEU* 3.6 30.0 - - - +
558E THR* 5.2 2.1 + - - +
559E PHE* 4.5 6.5 - - - -
575E VAL 3.0 5.5 + - - -
576E ALA 3.6 7.4 - - - -
578E ALA* 1.3 78.1 - - - +
580E LEU* 1.3 57.1 + - - +
582E LEU* 3.2 8.3 + - - +
583E PHE* 2.9 60.2 + - - -
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Residues in contact with LEU 580 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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555E VAL* 4.6 16.2 - - + -
559E PHE* 3.8 14.3 - - + -
576E ALA 2.9 13.4 + - - +
577E PHE* 3.3 34.1 + - + +
579E SER* 1.3 76.1 - - - +
581E SER* 1.3 56.5 + - - +
583E PHE* 3.1 13.8 + - - +
584E HIS* 2.9 63.2 + - + +
1030E ASP* 4.3 19.1 - - + +
1033E LEU* 3.7 26.5 - - + -
1067E PHE* 6.0 1.3 - - + -
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Residues in contact with SER 581 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317E PRO* 4.9 0.4 - - - -
320E ILE* 3.6 19.2 - - - +
577E PHE* 2.8 27.9 + - - -
578E ALA* 3.4 9.9 - - - -
580E LEU* 1.3 73.2 - - - +
582E LEU* 1.3 66.7 + - - +
584E HIS* 3.2 7.6 + - - +
585E ILE* 3.0 27.5 + - - +
1285E THR* 2.7 44.9 + - - +
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Residues in contact with LEU 582 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314E PHE* 4.0 25.1 - - + +
317E PRO* 3.8 25.8 - - + +
448E GLY* 4.9 2.2 - - - +
451E LEU* 3.6 26.0 - - + -
452E LEU* 3.5 37.2 - - + -
455E ILE* 5.3 1.6 - - + -
578E ALA 3.0 12.5 + - - +
579E SER* 3.4 10.8 - - - +
581E SER* 1.3 76.2 - - - +
583E PHE* 1.3 67.3 + - + +
585E ILE* 3.2 4.4 + - + +
586E LEU* 2.8 39.5 + - + +
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Residues in contact with PHE 583 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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452E LEU* 4.3 16.4 - - + -
463E GLY 6.1 0.4 - - - -
464E ALA* 6.1 4.5 - - + -
551E PRO* 5.0 8.5 - - + +
554E ALA* 4.4 11.4 - - + -
555E VAL* 3.4 33.7 - - + -
558E THR* 3.7 38.1 - - + -
559E PHE* 5.0 1.6 - + - -
579E SER* 2.9 39.9 + - - -
580E LEU* 3.1 11.6 + - - +
582E LEU* 1.3 91.8 - - + +
584E HIS* 1.3 66.1 + - - +
586E LEU* 3.7 12.0 - - + +
587E VAL* 2.9 26.3 + - - +
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Residues in contact with HIS 584 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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580E LEU* 2.9 51.7 + - + +
581E SER* 3.4 10.8 - - - +
583E PHE* 1.3 75.1 - - - +
585E ILE* 1.3 65.0 + - + +
587E VAL* 3.2 6.4 + - - +
588E THR 3.0 18.5 + - - -
1026E LEU* 6.0 6.3 - - + -
1030E ASP* 4.3 13.7 + - - -
1148E LEU* 6.2 1.3 - - + -
1285E THR* 4.2 14.4 - - + -
1286E TYR* 4.4 9.6 - + - -
1289E MET* 3.9 34.0 - - + +
1293E TYR* 3.7 10.9 + - + +
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Residues in contact with ILE 585 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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313E GLY 4.9 12.1 - - - +
314E PHE* 5.4 12.3 - - + -
316E GLY* 4.9 0.2 - - - -
317E PRO* 3.6 36.3 - - + -
320E ILE* 5.3 0.9 - - + -
444E GLN* 4.2 9.5 + - - +
581E SER* 3.0 12.5 + - - +
582E LEU* 3.2 9.6 + - + +
584E HIS* 1.3 77.5 - - + +
586E LEU* 1.3 57.4 + - - +
588E THR* 3.4 9.9 - - - -
589E PRO* 3.1 21.8 - - - +
1285E THR* 6.5 0.2 - - + -
1288E LEU* 4.1 25.1 - - + -
1292E ASN* 5.3 5.2 - - - +
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Residues in contact with LEU 586 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314E PHE* 6.1 2.5 - - + -
441E MET* 4.9 4.3 - - + +
444E GLN* 4.7 17.5 - - + +
445E ILE* 3.4 43.5 - - + -
448E GLY* 5.5 9.6 - - - -
449E VAL* 6.1 1.1 - - + +
452E LEU* 6.1 0.7 - - + -
467E ILE* 4.3 17.7 - - + -
582E LEU* 2.8 31.9 + - + +
583E PHE* 3.8 14.1 - - + +
584E HIS 3.1 0.2 - - - -
585E ILE* 1.3 77.2 - - - +
587E VAL* 1.3 58.5 + - - +
589E PRO* 3.1 15.7 - - + +
590E LEU* 3.6 11.7 - - + +
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Residues in contact with VAL 587 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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547E ASN* 4.6 3.9 + - - +
550E ILE* 5.5 0.4 - - + -
551E PRO* 4.1 27.8 - - + -
583E PHE 2.9 17.0 + - - +
584E HIS* 3.2 5.8 + - - +
586E LEU* 1.3 75.4 - - - +
588E THR* 1.3 66.9 + - - +
589E PRO 3.4 0.4 - - - -
590E LEU* 3.3 25.2 + - + +
591E PHE* 3.4 12.6 + - - +
1293E TYR* 4.4 2.5 - - - +
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Residues in contact with THR 588 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E HIS 3.0 7.8 + - - -
585E ILE* 3.4 11.2 - - - -
587E VAL* 1.3 78.1 - - - +
589E PRO* 1.3 68.5 - - - +
590E LEU 3.3 0.2 + - - -
591E PHE* 3.5 9.3 + - - +
592E LEU 3.9 0.9 + - - -
1292E ASN* 3.5 21.5 - - - -
1293E TYR* 3.3 25.3 + - - -
1296E TRP* 3.5 25.9 - - - -
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Residues in contact with PRO 589 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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437E ASN* 4.6 12.5 + - - +
441E MET* 4.2 20.1 - - + +
444E GLN* 3.2 38.1 - - - +
585E ILE 3.1 12.6 - - - +
586E LEU* 3.1 25.1 - - + +
588E THR* 1.3 83.6 - - - +
590E LEU* 1.3 56.7 + - - +
592E LEU* 3.2 9.0 + - + +
593E LEU* 2.9 26.5 + - - +
1296E TRP* 5.4 1.1 - - + -
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Residues in contact with LEU 590 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441E MET* 3.5 25.4 - - + -
467E ILE* 3.7 24.2 - - + -
470E LEU* 4.1 19.7 - - + -
474E GLN* 5.4 3.1 - - + +
547E ASN* 2.7 31.4 - - - +
550E ILE* 3.7 21.3 - - + -
586E LEU* 3.6 17.3 - - + +
587E VAL* 3.3 13.2 + - + +
588E THR 3.3 0.8 - - - -
589E PRO* 1.3 74.4 - - - +
591E PHE* 1.3 62.2 + - - +
593E LEU* 3.0 19.4 + - + +
594E SER 3.0 17.0 + - - -
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Residues in contact with PHE 591 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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547E ASN* 3.1 14.0 + - - +
587E VAL 3.4 8.7 + - - +
588E THR* 3.8 10.1 - - - +
589E PRO 3.3 0.4 - - - -
590E LEU* 1.3 78.0 - - - +
592E LEU* 1.3 60.0 + - - +
594E SER* 3.4 15.2 - - - -
595E SER* 4.4 2.1 + - - -
1140E GLU* 5.7 0.7 - - - +
1141E CYS* 5.8 3.5 - - - -
1144E ARG* 3.6 29.7 + - - +
1293E TYR* 5.7 3.1 - - + -
1296E TRP* 4.6 13.2 - - + -
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Residues in contact with LEU 592 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306E ARG* 5.6 3.4 - - - +
434E LEU* 4.1 24.0 - - + -
437E ASN* 3.6 24.0 - - + +
588E THR 3.9 3.7 + - - +
589E PRO* 3.2 10.1 + - + +
590E LEU 3.1 0.6 - - - -
591E PHE* 1.3 76.8 - - - +
593E LEU* 1.3 64.5 + - - +
594E SER 3.0 1.8 - - - -
595E SER* 3.0 14.8 + - - -
596E VAL* 2.9 21.6 + - - +
1296E TRP* 4.8 20.1 - - + -
1299E ARG* 5.7 8.3 - - - +
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Residues in contact with LEU 593 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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437E ASN* 4.7 4.0 - - - +
438E LEU* 5.3 10.3 - - + -
441E MET* 4.0 26.2 - - + -
474E GLN* 4.5 26.2 - - + +
589E PRO 2.9 14.5 + - - +
590E LEU* 3.4 24.9 - - + +
592E LEU* 1.3 75.5 - - - +
594E SER* 1.3 63.5 + - - +
596E VAL* 3.6 24.9 - - + +
597E VAL* 3.0 33.1 + - + +
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Residues in contact with SER 594 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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474E GLN* 5.3 3.1 - - - -
540E THR* 5.1 3.1 + - - -
543E SER* 3.6 23.2 + - - -
544E ILE* 4.1 20.0 + - - +
547E ASN* 3.4 16.6 - - - -
590E LEU 3.0 6.2 + - - -
591E PHE 3.4 16.2 - - - -
593E LEU* 1.3 76.0 - - - +
595E SER* 1.3 56.1 + - - +
597E VAL* 3.1 21.8 - - - +
598E ARG* 3.4 13.6 - - - +
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Residues in contact with SER 595 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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434E LEU* 4.0 10.5 - - - +
591E PHE 4.4 1.3 + - - -
592E LEU* 3.0 15.6 + - - -
594E SER* 1.3 77.4 + - - +
596E VAL* 1.3 66.3 + - - +
597E VAL 3.3 0.9 - - - -
598E ARG* 3.3 19.5 + - - +
599E SER* 2.9 25.1 + - - -
1137E SER* 5.6 5.4 + - - -
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Residues in contact with VAL 596 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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431E PHE* 5.5 0.2 - - - -
434E LEU* 3.6 44.7 - - + +
437E ASN* 3.7 25.4 - - - +
438E LEU* 5.0 19.1 - - + +
592E LEU 2.9 19.5 + - - +
593E LEU* 3.4 24.5 - - + +
595E SER* 1.3 77.7 - - - +
597E VAL* 1.3 52.8 - - - +
599E SER* 3.4 2.3 + - - -
600E THR* 2.6 42.7 + - - +
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Residues in contact with VAL 597 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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474E GLN* 4.7 16.2 - - + +
477E VAL* 6.2 3.4 - - + -
478E ALA* 3.4 37.5 - - + +
481E LEU* 6.1 2.2 - - + -
543E SER* 5.2 4.0 - - - +
593E LEU* 3.0 17.8 + - + +
594E SER* 3.1 22.2 - - - +
596E VAL* 1.3 75.1 - - - +
598E ARG* 1.3 69.6 + - + +
600E THR* 3.2 9.9 + - + -
601E VAL* 3.0 25.1 + - + +
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Residues in contact with ARG 598 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481E LEU* 3.7 29.3 - - + +
536E PHE* 3.3 37.2 - - + -
540E THR* 3.3 29.6 + - - +
543E SER* 6.5 1.1 - - - -
544E ILE* 5.8 2.4 - - - +
594E SER* 3.4 19.5 - - - +
595E SER* 3.3 17.9 + - - +
597E VAL* 1.3 80.3 - - + +
599E SER* 1.3 62.8 + - - +
601E VAL* 3.2 5.0 + - - +
602E LYS* 3.0 35.4 + - + +
1133E GLN 3.5 18.8 + - - -
1134E HIS* 5.6 2.0 - - - -
1137E SER* 2.4 33.1 + - - +
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Residues in contact with SER 599 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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427E GLN 4.3 3.1 + - - +
430E TRP* 3.9 6.8 - - - +
431E PHE* 3.4 31.0 + - - +
434E LEU* 3.8 16.6 - - - -
595E SER* 2.9 17.0 + - - -
596E VAL 3.8 3.6 - - - -
598E ARG* 1.3 76.6 - - - +
600E THR* 1.3 57.2 + - - +
602E LYS* 3.8 8.5 - - - +
603E ALA* 2.9 31.0 + - - +
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Residues in contact with THR 600 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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431E PHE* 3.6 25.1 - - + -
438E LEU* 5.4 12.5 - - + +
596E VAL* 2.6 29.8 + - - +
597E VAL* 3.3 14.8 - - + -
598E ARG 3.2 0.2 - - - -
599E SER* 1.3 78.0 - - - +
601E VAL* 1.3 65.1 + - + +
603E ALA* 3.7 1.9 - - - +
604E LEU* 2.9 44.3 + - + +
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Residues in contact with VAL 601 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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478E ALA* 3.8 25.4 - - + +
481E LEU* 3.6 21.1 - - + -
482E SER* 3.6 33.9 - - - +
485E GLN* 4.1 11.9 - - + -
597E VAL* 3.0 25.0 + - + +
598E ARG 3.5 6.3 - - - +
600E THR* 1.3 75.6 - - + +
602E LYS* 1.3 65.0 + - - +
604E LEU* 3.1 16.3 + - + +
605E VAL* 3.1 24.7 + - + +
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Residues in contact with LYS 602 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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427E GLN* 3.4 39.1 - - + +
430E TRP* 5.6 0.8 - - - -
481E LEU* 5.4 1.3 - - + -
485E GLN* 4.0 35.0 - - + +
489E LEU* 5.8 2.2 - - - +
536E PHE* 5.3 8.9 - - + -
598E ARG* 3.0 26.0 + - + +
599E SER* 3.9 7.0 - - - +
601E VAL* 1.3 78.1 - - + +
603E ALA* 1.3 57.3 + - - +
605E VAL* 3.4 5.5 + - - +
606E SER* 2.9 30.1 + - - -
1133E GLN* 3.5 21.2 + - - +
1134E HIS* 3.4 35.4 + - - -
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Residues in contact with ALA 603 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288E TRP* 5.4 0.2 - - - -
427E GLN* 4.8 5.1 - - - +
428E LEU* 3.9 12.8 - - + -
431E PHE* 3.4 39.5 - - + -
599E SER 2.9 18.1 + - - +
600E THR 3.7 1.1 - - - +
602E LYS* 1.3 73.7 - - - +
604E LEU* 1.3 67.4 + - + +
606E SER* 4.1 6.1 - - - -
607E VAL* 2.9 31.2 + - + +
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Residues in contact with LEU 604 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288E TRP* 3.5 37.9 - - + -
431E PHE* 5.5 5.8 - - + -
482E SER* 5.8 3.8 - - - +
600E THR* 2.9 40.4 + - + +
601E VAL* 3.1 17.2 + - + +
603E ALA* 1.3 79.0 - - + +
605E VAL* 1.3 65.5 + - + +
607E VAL* 3.3 2.4 + - - +
608E GLN* 3.0 21.2 + - - +
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Residues in contact with VAL 605 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482E SER* 5.1 8.5 - - - +
485E GLN* 4.8 11.9 - - + -
486E ARG* 5.2 16.4 - - + +
489E LEU* 4.0 26.0 - - + -
601E VAL* 3.1 24.5 + - + +
602E LYS* 4.0 4.9 - - - +
604E LEU* 1.3 78.1 - - + +
606E SER* 1.3 56.8 + - - +
608E GLN* 3.2 10.5 - - - +
609E LYS* 3.0 38.7 + - + +
----------------------------------------------------------
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Residues in contact with SER 606 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424E ASP* 2.0 58.2 + - - +
427E GLN* 3.7 13.2 - - - -
428E LEU* 4.8 3.4 - - - -
489E LEU* 5.6 4.2 - - - +
602E LYS 2.9 18.8 + - - -
603E ALA* 3.7 8.1 - - - -
605E VAL* 1.3 78.7 - - - +
607E VAL* 1.3 58.1 + - - +
609E LYS* 3.2 10.2 + - - +
610E LEU* 2.9 21.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 607 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286E ALA* 6.1 1.8 - - + -
287E ILE* 3.6 28.9 - - + -
288E TRP* 3.2 37.5 - - + +
291E LEU* 6.6 0.4 - - + -
428E LEU* 3.6 24.5 - - + -
603E ALA* 2.9 21.0 + - + +
604E LEU 4.0 2.5 - - - +
606E SER* 1.3 73.7 - - - +
608E GLN* 1.3 66.4 + - - +
610E LEU* 3.8 12.3 - - + -
611E SER* 2.9 24.3 + - - -
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Residues in contact with GLN 608 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604E LEU 3.0 13.3 + - - +
605E VAL* 3.2 15.4 + - + +
607E VAL* 1.3 77.9 - - - +
609E LYS* 1.3 93.1 + - - +
611E SER* 3.4 5.1 + - - -
612E GLU* 2.9 38.8 + - - +
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Residues in contact with LYS 609 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420E LEU* 5.5 7.3 - - + +
424E ASP* 6.5 0.2 - - + -
489E LEU* 3.8 30.0 - - + +
490E GLU* 6.2 2.2 - - - +
493E ASN* 5.3 2.9 - - - +
605E VAL* 3.0 26.4 + - + +
606E SER* 3.2 9.6 + - - +
608E GLN* 1.3 88.4 - - - +
610E LEU* 1.3 63.0 + - + +
612E GLU* 3.1 30.5 + - - +
613E PHE* 2.9 22.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287E ILE* 4.5 13.2 - - + -
391E ILE* 5.6 4.9 - - + -
395E ILE* 4.2 22.4 - - + -
420E LEU* 4.4 11.9 - - + -
424E ASP* 3.1 47.8 - - + +
428E LEU* 3.5 17.9 - - + -
606E SER 2.9 7.5 + - - +
607E VAL* 3.3 21.5 - - + +
609E LYS* 1.3 75.9 - - - +
611E SER* 1.3 58.2 + - - +
613E PHE* 2.8 21.8 + - + +
614E LEU* 2.9 27.0 + - + +
----------------------------------------------------------
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Residues in contact with SER 611 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286E ALA* 5.4 7.8 - - - +
287E ILE* 4.7 23.1 - - - +
607E VAL* 2.9 17.6 + - - -
608E GLN* 3.9 5.2 - - - -
610E LEU* 1.3 72.9 - - - +
612E GLU* 1.3 61.8 + - - +
614E LEU* 4.0 9.1 - - - +
615E SER* 3.3 25.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU 612 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
411E GLU* 5.5 10.7 - - - +
608E GLN* 2.9 26.0 + - - +
609E LYS* 3.1 45.3 + - - +
610E LEU 3.0 0.2 - - - -
611E SER* 1.3 77.2 - - - +
613E PHE* 1.3 58.8 + - - +
615E SER* 3.0 20.4 + - - -
616E SER* 4.2 4.0 + - - -
----------------------------------------------------------
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Residues in contact with PHE 613 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395E ILE* 4.4 15.7 - - + -
398E LYS* 4.0 22.5 - - + -
399E ILE* 3.4 33.4 - - + -
402E LEU* 4.9 5.6 - - + -
412E MET* 3.7 34.3 - - + -
417E ILE* 3.5 26.7 - - + -
420E LEU* 3.8 26.5 - - + -
609E LYS 2.9 11.5 + - - +
610E LEU* 2.8 16.0 + - + +
612E GLU* 1.3 71.0 - - - +
614E LEU* 1.3 71.6 + - + +
616E SER* 2.5 28.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 614 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287E ILE* 5.7 12.8 - - + -
394E LYS* 4.5 28.5 - - + +
395E ILE* 4.8 13.7 - - + -
398E LYS* 3.4 37.3 - - + +
610E LEU* 2.9 37.4 + - + +
611E SER* 3.5 8.5 + - - +
612E GLU 3.4 0.4 - - - -
613E PHE* 1.3 88.1 - - + +
615E SER* 1.3 54.9 + - - +
616E SER 3.2 5.7 + - - +
618E GLU* 5.0 0.9 - - - +
----------------------------------------------------------
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Residues in contact with SER 615 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611E SER* 3.3 11.8 + - - -
612E GLU* 3.0 17.7 + - - -
613E PHE 3.1 0.4 + - - -
614E LEU* 1.3 77.2 - - - +
616E SER* 1.3 61.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il