Contacts of the helix formed by residues 574 - 615 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 574 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321H PHE* 3.1 32.9 - - - -
324H VAL* 3.5 39.9 - - - +
325H ASP* 4.4 8.7 - - - +
573H PRO* 1.3 81.5 - - - +
575H VAL* 1.3 68.9 + - - +
577H PHE* 3.4 3.0 + - - +
578H ALA* 2.8 28.4 + - - +
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Residues in contact with VAL 575 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321H PHE* 4.1 13.7 - - + -
456H LEU* 3.0 48.9 - - + +
562H HIS* 5.2 11.7 - - - +
573H PRO* 3.5 28.9 - - + -
574H SER* 1.3 77.9 + - - +
576H ALA* 1.3 74.0 + - + +
579H SER 3.0 19.6 + - - -
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Residues in contact with ALA 576 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 4.8 1.3 - - - -
559H PHE* 3.1 41.4 - - + -
562H HIS* 5.5 6.7 - - + +
573H PRO* 4.4 4.2 + - + +
574H SER 3.4 0.4 - - - -
575H VAL* 1.3 85.8 - - + +
577H PHE* 1.3 59.2 + - - +
579H SER* 3.3 0.8 + - - -
580H LEU 2.9 22.7 + - - -
1033H LEU* 4.8 10.8 - - + -
1036H TRP* 5.6 4.5 - - + +
1037H THR* 5.0 12.8 - - + -
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Residues in contact with PHE 577 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 4.6 4.9 - - + -
324H VAL* 5.8 2.7 - - + -
573H PRO 4.2 9.7 + - - +
574H SER* 3.4 6.4 + - - +
575H VAL 3.3 0.4 - - - -
576H ALA* 1.3 77.3 - - - +
578H ALA* 1.3 61.4 + - - +
580H LEU* 3.6 29.1 - - + +
581H SER* 2.8 36.8 + - - -
1030H ASP* 5.4 4.3 - - + -
1033H LEU* 4.8 11.6 - - + +
1034H ALA* 6.2 2.0 - - - -
1037H THR* 5.4 4.9 - - + +
1278H GLY* 5.1 5.6 - - - +
1281H GLY* 2.9 34.3 - - - -
1282H LEU* 3.3 37.0 - - + -
1285H THR* 3.0 31.4 - - + -
1286H TYR* 4.7 8.3 - + - -
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Residues in contact with ALA 578 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317H PRO* 4.2 10.9 - - + +
320H ILE* 4.7 7.2 - - + +
321H PHE* 4.1 30.1 - - + +
324H VAL* 6.2 0.4 - - + -
455H ILE* 6.2 0.2 - - + -
456H LEU* 3.7 16.2 - - + -
574H SER 2.8 19.4 + - - +
577H PHE* 1.3 78.2 - - - +
579H SER* 1.3 61.7 + - - +
581H SER* 3.2 9.0 + - - -
582H LEU* 3.0 22.3 + - - +
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Residues in contact with SER 579 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452H LEU* 3.8 14.1 - - - +
455H ILE* 6.0 0.9 - - - -
456H LEU* 3.6 29.2 - - - +
558H THR* 5.2 2.3 + - - +
559H PHE* 4.5 7.0 - - - -
575H VAL 3.0 6.7 + - - -
576H ALA 3.6 6.5 - - - -
578H ALA* 1.3 76.4 - - - +
580H LEU* 1.3 56.9 + - - +
582H LEU* 3.2 8.2 + - - +
583H PHE* 2.9 59.5 + - - -
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Residues in contact with LEU 580 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555H VAL* 4.6 16.2 - - + -
559H PHE* 3.8 14.1 - - + -
576H ALA 2.9 14.2 + - - +
577H PHE* 3.3 33.2 + - + +
579H SER* 1.3 76.0 - - - +
581H SER* 1.3 57.8 + - - +
583H PHE* 3.1 13.0 + - + +
584H HIS* 2.9 62.4 + - + +
1030H ASP* 4.3 17.7 - - + +
1033H LEU* 3.7 26.9 - - + -
1067H PHE* 6.0 1.1 - - + -
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Residues in contact with SER 581 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317H PRO* 4.9 0.9 - - - -
320H ILE* 3.6 18.6 - - - +
577H PHE* 2.8 26.9 + - - -
578H ALA* 3.2 10.4 + - - -
580H LEU* 1.3 74.2 - - - +
582H LEU* 1.3 65.2 + - - +
584H HIS* 3.2 7.7 + - - +
585H ILE* 3.0 28.3 + - - +
1285H THR* 2.7 44.2 + - - +
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Residues in contact with LEU 582 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314H PHE* 4.0 25.1 - - + +
317H PRO* 3.8 25.9 - - + +
448H GLY* 4.9 1.8 - - - +
451H LEU* 3.6 25.6 - - + -
452H LEU* 3.5 36.3 - - + -
455H ILE* 5.3 1.3 - - + -
578H ALA 3.0 13.5 + - - +
579H SER* 3.2 10.7 + - - +
581H SER* 1.3 75.2 - - - +
583H PHE* 1.3 67.0 + - + +
585H ILE* 3.2 4.6 + - + +
586H LEU* 2.8 40.0 + - + +
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Residues in contact with PHE 583 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452H LEU* 4.3 16.2 - - + -
463H GLY 6.1 0.2 - - - -
464H ALA* 6.1 4.3 - - + -
551H PRO* 5.0 8.1 - - + +
554H ALA* 4.4 11.4 - - + -
555H VAL* 3.4 33.4 - - + -
558H THR* 3.7 37.0 - - + -
559H PHE* 5.0 1.8 - + - -
579H SER* 2.9 39.7 + - - -
580H LEU* 3.1 12.7 + - - +
582H LEU* 1.3 90.4 - - + +
584H HIS* 1.3 66.6 + - - +
586H LEU* 3.7 12.8 - - + +
587H VAL* 2.9 26.0 + - - +
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Residues in contact with HIS 584 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580H LEU* 2.9 50.8 + - + +
581H SER* 3.4 11.2 - - - +
583H PHE* 1.3 75.9 - - - +
585H ILE* 1.3 64.3 + - + +
587H VAL* 3.2 6.0 + - - +
588H THR 3.0 19.2 + - - -
1026H LEU* 6.0 6.3 - - + -
1030H ASP* 4.3 14.3 + - - -
1148H LEU* 6.2 1.6 - - + -
1285H THR* 4.2 13.7 - - + -
1286H TYR* 4.4 9.5 - + - -
1289H MET* 3.9 33.7 - - + +
1293H TYR* 3.7 10.9 + - + -
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Residues in contact with ILE 585 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313H GLY 4.9 12.1 - - - +
314H PHE* 5.4 12.8 - - + -
316H GLY* 4.9 0.2 - - - -
317H PRO* 3.6 36.6 - - + -
320H ILE* 5.3 0.7 - - + -
444H GLN* 4.2 10.7 + - - +
581H SER 3.0 12.6 + - - +
582H LEU* 3.6 9.0 - - + +
584H HIS* 1.3 78.1 - - + +
586H LEU* 1.3 57.8 + - - +
588H THR* 3.4 8.9 - - - -
589H PRO* 3.1 21.7 - - - +
1285H THR* 6.6 0.2 - - + -
1288H LEU* 4.1 25.8 - - + -
1292H ASN* 5.3 5.4 - - - +
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Residues in contact with LEU 586 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314H PHE* 6.1 2.5 - - + -
441H MET* 5.0 4.0 - - + +
444H GLN* 4.7 17.7 - - + +
445H ILE* 3.4 43.1 - - + -
448H GLY* 5.5 9.0 - - - -
449H VAL* 6.3 0.4 - - + -
452H LEU* 6.2 0.9 - - + -
467H ILE* 4.3 17.5 - - + -
582H LEU* 2.8 31.7 + - + +
583H PHE* 3.8 14.4 - - + +
584H HIS 3.1 0.2 - - - -
585H ILE* 1.3 77.6 - - - +
587H VAL* 1.3 59.4 + - - +
589H PRO* 3.1 16.3 - - + +
590H LEU* 3.6 12.2 - - - +
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Residues in contact with VAL 587 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547H ASN* 4.6 3.6 + - - +
550H ILE* 5.5 0.2 - - + -
551H PRO* 4.1 27.6 - - + -
583H PHE 2.9 17.2 + - - +
584H HIS* 3.9 5.4 - - - +
586H LEU* 1.3 73.7 - - - +
588H THR* 1.3 67.1 + - - +
589H PRO 3.4 0.2 - - - -
590H LEU* 3.3 24.9 + - + +
591H PHE* 3.4 13.0 + - - +
1293H TYR* 4.4 2.2 - - - +
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Residues in contact with THR 588 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584H HIS 3.0 8.9 + - - -
585H ILE* 3.4 11.0 - - - -
586H LEU 3.2 0.2 - - - -
587H VAL* 1.3 78.2 - - - +
589H PRO* 1.3 70.2 - - - +
591H PHE* 3.5 9.2 + - - +
592H LEU 3.9 0.9 + - - -
1292H ASN* 3.5 21.1 - - - -
1293H TYR* 3.3 24.8 + - - -
1296H TRP* 3.5 25.1 - - - -
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Residues in contact with PRO 589 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437H ASN* 4.6 11.8 + - - +
441H MET* 4.2 21.4 - - + +
444H GLN* 3.2 37.5 - - - +
585H ILE 3.1 11.4 - - - +
586H LEU* 3.1 25.1 - - + +
588H THR* 1.3 84.7 - - - +
590H LEU* 1.3 55.3 + - - +
592H LEU* 3.2 9.0 + - + +
593H LEU* 2.9 26.7 + - - +
1296H TRP* 5.4 0.7 - - + -
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Residues in contact with LEU 590 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441H MET* 3.5 25.4 - - + -
467H ILE* 3.7 24.5 - - + -
470H LEU* 4.1 19.5 - - + -
474H GLN* 5.4 3.6 - - + +
547H ASN* 2.7 32.0 - - - +
550H ILE* 3.7 21.8 - - + -
586H LEU 3.6 17.3 - - - +
587H VAL* 3.3 13.7 + - + +
588H THR 3.3 0.8 - - - -
589H PRO* 1.3 73.7 - - - +
591H PHE* 1.3 61.7 + - - +
593H LEU* 3.0 20.2 + - + +
594H SER 3.0 17.0 + - - -
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Residues in contact with PHE 591 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547H ASN* 3.1 13.2 - - - +
587H VAL 3.4 8.3 + - - +
588H THR* 3.8 10.5 - - - +
589H PRO 3.3 0.6 - - - -
590H LEU* 1.3 78.7 - - - +
592H LEU* 1.3 58.7 + - - +
594H SER* 3.4 15.6 - - - -
595H SER* 4.4 2.1 + - - -
1140H GLU* 5.7 1.2 - - - +
1141H CYS* 5.8 3.5 - - - -
1144H ARG* 3.6 29.8 + - - +
1293H TYR* 5.7 3.4 - - + -
1296H TRP* 4.6 12.3 - - + -
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Residues in contact with LEU 592 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306H ARG* 5.6 3.6 - - - +
434H LEU* 4.1 25.4 - - + -
437H ASN* 3.6 23.3 - - + +
588H THR 3.9 3.9 + - - +
589H PRO* 3.2 10.5 + - + +
590H LEU 3.1 0.4 - - - -
591H PHE* 1.3 77.4 - - - +
593H LEU* 1.3 64.2 + - - +
594H SER 3.0 2.5 - - - -
595H SER* 3.0 14.4 + - - +
596H VAL* 2.9 21.3 + - - +
1296H TRP* 4.8 18.8 - - + -
1299H ARG* 5.7 8.1 - - - +
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Residues in contact with LEU 593 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437H ASN* 4.7 3.8 - - - +
438H LEU* 5.3 10.8 - - + -
441H MET* 4.0 24.9 - - + -
474H GLN* 4.5 24.7 - - + +
589H PRO 2.9 15.7 + - - +
590H LEU* 3.0 25.8 + - + +
592H LEU* 1.3 76.2 - - - +
594H SER* 1.3 62.0 + - - +
596H VAL* 3.6 25.0 - - + +
597H VAL* 3.0 32.6 + - + +
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Residues in contact with SER 594 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN* 5.3 3.6 + - - -
540H THR* 5.2 2.9 + - - -
543H SER* 3.6 22.8 + - - -
544H ILE* 4.1 20.7 + - - +
547H ASN* 3.4 16.6 - - - -
590H LEU 3.0 6.2 + - - -
591H PHE 3.4 16.4 - - - -
593H LEU* 1.3 76.0 - - - +
595H SER* 1.3 56.9 + - - +
597H VAL* 3.1 21.5 - - - +
598H ARG* 3.4 14.3 - - - +
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Residues in contact with SER 595 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434H LEU* 4.0 10.3 - - - +
591H PHE 4.4 1.5 + - - -
592H LEU* 3.0 16.0 + - - -
594H SER* 1.3 77.2 - - - +
596H VAL* 1.3 66.7 - - - +
597H VAL 3.3 0.7 - - - -
598H ARG* 3.3 19.1 + - - +
599H SER* 2.9 25.6 + - - -
1137H SER* 5.6 6.7 + - - -
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Residues in contact with VAL 596 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431H PHE* 5.5 0.2 - - - -
434H LEU* 3.6 47.5 - - + +
437H ASN* 3.7 22.0 - - - +
438H LEU* 5.0 18.8 - - + +
592H LEU 2.9 19.3 + - - +
593H LEU* 3.0 24.4 + - + +
595H SER* 1.3 78.0 - - - +
597H VAL* 1.3 52.9 + - - +
599H SER* 3.4 2.3 + - - -
600H THR* 2.6 42.8 + - - +
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Residues in contact with VAL 597 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN* 4.7 16.2 - - + +
477H VAL* 6.2 3.6 - - + -
478H ALA* 3.4 37.7 - - + +
481H LEU* 6.1 2.0 - - + -
543H SER* 5.2 4.5 - - - +
593H LEU* 3.0 18.8 + - + +
594H SER* 3.1 22.9 - - - +
596H VAL* 1.3 74.6 - - - +
598H ARG* 1.3 70.2 + - + +
600H THR* 3.2 10.6 + - + -
601H VAL* 3.0 25.1 + - + +
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Residues in contact with ARG 598 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 3.7 29.3 - - + +
536H PHE* 3.3 35.7 - - + -
540H THR* 3.3 31.2 + - - +
543H SER* 6.5 0.9 - - - -
544H ILE* 5.8 2.4 - - - +
594H SER* 3.4 19.3 - - - +
595H SER* 3.3 19.2 + - - +
597H VAL* 1.3 79.7 - - + +
599H SER* 1.3 62.2 + - - +
601H VAL* 3.2 4.7 + - - +
602H LYS* 3.0 35.1 + - + +
1133H GLN 3.5 19.4 + - - -
1134H HIS* 5.6 1.6 - - - -
1137H SER* 2.4 33.0 + - - -
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Residues in contact with SER 599 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427H GLN 4.3 3.1 + - - +
430H TRP* 3.9 6.6 - - - +
431H PHE* 3.4 31.6 + - - +
434H LEU* 3.8 15.7 - - - -
595H SER* 2.9 17.6 + - - -
596H VAL 3.8 4.3 - - - -
598H ARG* 1.3 76.0 - - - +
600H THR* 1.3 57.4 + - - +
602H LYS* 3.4 9.0 + - - +
603H ALA* 2.9 31.0 + - - +
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Residues in contact with THR 600 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431H PHE* 3.6 25.4 - - + -
438H LEU* 5.4 12.4 - - + +
596H VAL* 2.6 29.4 + - - +
597H VAL* 3.3 15.5 - - + -
599H SER* 1.3 77.1 - - - +
601H VAL* 1.3 64.1 + - + +
603H ALA* 3.2 1.9 + - - +
604H LEU* 2.9 44.6 + - + +
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Residues in contact with VAL 601 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478H ALA* 3.8 24.9 - - + +
481H LEU* 3.6 22.0 - - + -
482H SER* 3.6 33.2 - - - +
485H GLN* 4.1 12.3 - - + -
597H VAL* 3.0 25.7 + - + +
598H ARG 3.2 6.5 + - - +
600H THR* 1.3 74.6 - - + +
602H LYS* 1.3 63.9 + - - +
604H LEU* 3.1 16.3 + - + +
605H VAL* 3.1 24.9 + - + +
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Residues in contact with LYS 602 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427H GLN* 3.4 39.8 - - + +
430H TRP* 5.6 0.8 - - - -
481H LEU* 5.4 1.3 - - + -
485H GLN* 4.0 34.3 - - + +
489H LEU* 5.8 2.0 - - - +
536H PHE* 5.3 9.7 - - + -
598H ARG* 3.0 25.8 + - + +
599H SER* 3.9 7.2 - - - +
601H VAL* 1.3 78.5 - - + +
603H ALA* 1.3 58.3 + - - +
605H VAL* 3.4 5.0 + - - +
606H SER* 2.9 30.7 + - - -
1133H GLN* 3.5 20.8 + - - +
1134H HIS* 3.4 35.2 + - - -
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Residues in contact with ALA 603 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288H TRP* 5.4 0.4 - - - -
427H GLN* 4.8 6.0 - - - +
428H LEU* 3.9 12.8 - - + -
431H PHE* 3.4 39.3 - - + -
599H SER 2.9 18.9 + - - +
600H THR 3.7 1.1 - - - +
602H LYS* 1.3 72.5 - - - +
604H LEU* 1.3 67.0 - - - +
606H SER* 3.7 6.2 - - - -
607H VAL* 2.9 31.6 + - + +
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Residues in contact with LEU 604 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288H TRP* 3.5 38.1 - - + -
431H PHE* 5.5 6.1 - - + -
482H SER* 5.8 4.0 - - - +
600H THR* 2.9 40.1 + - + +
601H VAL* 3.4 17.0 - - + +
603H ALA* 1.3 79.2 - - + +
605H VAL* 1.3 65.7 + - + +
607H VAL* 3.9 2.3 - - - +
608H GLN* 3.0 21.7 + - - +
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Residues in contact with VAL 605 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482H SER* 5.1 8.3 - - - +
485H GLN* 4.8 12.1 - - + -
486H ARG* 5.2 16.6 - - + +
489H LEU* 4.0 25.8 - - + -
601H VAL* 3.1 24.9 + - + +
602H LYS* 4.0 4.7 - - - +
604H LEU* 1.3 78.6 - - + +
606H SER* 1.3 57.9 + - - +
608H GLN* 3.2 12.1 + - - +
609H LYS* 3.0 39.5 + - + +
----------------------------------------------------------
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Residues in contact with SER 606 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424H ASP* 2.0 57.7 + - - +
427H GLN* 3.7 13.2 - - - -
428H LEU* 4.8 3.6 - - - -
489H LEU* 5.6 3.8 - - - +
602H LYS 2.9 18.7 + - - -
603H ALA* 3.7 7.9 - - - -
604H LEU 3.2 0.2 - - - -
605H VAL* 1.3 78.1 - - - +
607H VAL* 1.3 58.3 + - - +
609H LYS* 3.2 10.5 + - - +
610H LEU* 2.9 22.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 607 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286H ALA* 6.1 1.8 - - + -
287H ILE* 3.6 30.1 - - + -
288H TRP* 3.2 37.7 - - + +
291H LEU* 6.6 0.7 - - + -
428H LEU* 3.6 24.5 - - + -
603H ALA* 2.9 21.0 + - + +
604H LEU 4.0 2.7 - - - +
606H SER* 1.3 73.0 - - - +
608H GLN* 1.3 66.0 + - - +
610H LEU* 3.3 12.5 - - + +
611H SER* 2.9 24.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 608 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288H TRP* 5.9 0.2 - - - -
604H LEU 3.0 14.2 + - - +
605H VAL* 3.2 15.6 + - + +
607H VAL* 1.3 77.6 - - - +
609H LYS* 1.3 92.7 + - - +
611H SER* 3.4 5.1 + - - -
612H GLU* 2.9 38.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 609 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420H LEU* 5.5 7.0 - - + +
424H ASP* 6.5 0.2 - - + -
489H LEU* 3.8 30.0 - - + +
490H GLU* 6.2 2.4 - - - +
493H ASN* 5.3 2.7 - - - +
605H VAL* 3.0 26.5 + - + +
606H SER* 3.5 9.9 - - - +
608H GLN* 1.3 88.4 - - - +
610H LEU* 1.3 62.0 + - - +
612H GLU* 3.1 29.8 + - - +
613H PHE* 2.9 22.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287H ILE* 4.5 12.6 - - + -
391H ILE* 5.6 5.2 - - + -
395H ILE* 4.2 21.8 - - + -
420H LEU* 4.4 12.3 - - + -
424H ASP* 3.1 45.5 - - + +
428H LEU* 3.5 18.4 - - + -
606H SER 2.9 7.9 + - - +
607H VAL* 3.1 21.3 + - + +
609H LYS* 1.3 75.0 - - - +
611H SER* 1.3 59.9 + - - +
613H PHE* 2.8 21.4 + - + +
614H LEU* 2.9 27.7 + - + +
----------------------------------------------------------
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Residues in contact with SER 611 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286H ALA* 5.4 8.6 - - - +
287H ILE* 4.7 23.1 - - - +
607H VAL* 2.9 17.5 + - - -
608H GLN* 3.9 5.2 - - - -
610H LEU* 1.3 73.4 - - - +
612H GLU* 1.3 63.2 + - - +
614H LEU* 4.0 8.7 - - - +
615H SER* 3.3 25.3 + - - -
----------------------------------------------------------
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Residues in contact with GLU 612 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
411H GLU* 5.5 9.9 - - - +
412H MET* 5.9 0.2 - - - +
608H GLN* 2.9 27.6 + - - +
609H LYS* 3.1 43.2 + - - +
611H SER* 1.3 75.9 - - - +
613H PHE* 1.3 60.4 + - - +
615H SER* 3.0 19.4 + - - -
616H SER* 4.2 4.0 + - - -
----------------------------------------------------------
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Residues in contact with PHE 613 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395H ILE* 4.4 15.9 - - + -
398H LYS* 4.0 23.3 - - + -
399H ILE* 3.4 34.1 - - + -
402H LEU* 4.9 5.8 - - + -
412H MET* 3.7 33.2 - - + -
417H ILE* 3.5 26.2 - - + -
420H LEU* 3.8 25.4 - - + -
609H LYS 2.9 11.3 + - - +
610H LEU* 2.8 15.4 + - - +
612H GLU* 1.3 72.0 - - - +
614H LEU* 1.3 72.8 + - + +
616H SER* 2.5 27.4 + - - -
----------------------------------------------------------
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Residues in contact with LEU 614 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287H ILE* 5.7 13.0 - - + -
394H LYS* 4.5 27.4 - - + +
395H ILE* 4.8 15.0 - - + -
398H LYS* 3.4 37.3 - - + +
610H LEU* 2.9 38.0 + - + +
611H SER* 4.0 8.7 - - - +
612H GLU 3.4 0.4 - - - -
613H PHE* 1.3 88.6 - - + +
615H SER* 1.3 55.7 + - - +
616H SER 3.2 6.1 + - - +
618H GLU* 5.0 0.5 - - - +
----------------------------------------------------------
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Residues in contact with SER 615 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611H SER* 3.3 11.7 + - - -
612H GLU* 3.0 17.9 + - - -
613H PHE 3.1 0.6 + - - -
614H LEU* 1.3 76.8 - - - +
616H SER* 1.3 62.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il