Contacts of the helix formed by residues 67 - 97 (chain B) in PDB entry 6C3P


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LYS 67 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66B  LEU*     1.3    81.4    -      -       -      +
     68B  TRP*     1.3    72.5    +      -       +      +
     69B  PRO*     3.5    23.1    -      -       +      +
     70B  HIS*     3.2    35.5    +      -       +      +
     71B  THR*     3.1    18.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 68 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66B  LEU      3.4     2.0    +      -       -      -
     67B  LYS*     1.3    72.8    -      -       +      +
     69B  PRO*     1.3    72.6    -      -       +      +
     71B  THR*     3.1     4.4    +      -       +      -
     72B  LEU*     2.9    24.5    +      -       -      +
    167B  ILE*     5.4     7.9    -      -       +      -
    170B  LYS*     3.4    61.8    -      -       +      +
    171B  THR*     4.2     2.0    -      -       -      -
    173B  GLN*     5.5     3.8    -      -       +      -
     55C  PHE*     4.9    20.4    -      +       -      -
     56C  LEU*     5.3     9.8    +      -       +      -
     57C  GLN*     5.5     8.1    -      -       +      +
     60C  PHE*     3.4    39.0    -      +       -      -
    162C  ILE*     5.0     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with PRO 69 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67B  LYS*     3.5    34.5    -      -       +      +
     68B  TRP*     1.3    94.8    -      -       +      +
     70B  HIS*     1.3    61.0    +      -       +      +
     72B  LEU*     3.5    10.6    +      -       +      +
     73B  LEU*     2.9    31.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 70 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66B  LEU*     3.3    20.4    -      -       +      -
     67B  LYS*     3.2    47.0    +      -       +      +
     69B  PRO*     1.3    79.3    -      -       +      +
     71B  THR*     1.3    59.3    +      -       -      +
     73B  LEU*     3.3     8.1    +      -       +      +
     74B  ILE*     2.9    37.1    +      -       +      +
     52F  GLY*     3.6    41.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 71 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63B  LEU*     3.8    15.1    +      -       +      +
     66B  LEU*     3.1    27.9    -      -       -      +
     67B  LYS      3.1     6.2    +      -       -      -
     68B  TRP*     3.1     8.8    +      -       +      -
     70B  HIS*     1.3    73.2    -      -       -      +
     72B  LEU*     1.3    67.6    +      -       -      +
     74B  ILE*     3.1    10.2    +      -       -      +
     75B  PHE*     3.0    49.6    +      -       +      -
    166B  CYS      6.5     0.2    -      -       -      -
    167B  ILE*     5.0     3.6    -      -       +      -
    170B  LYS*     3.7    29.2    +      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 72 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68B  TRP*     2.9    13.2    +      -       +      +
     69B  PRO*     3.5    13.7    -      -       +      +
     71B  THR*     1.3    76.5    -      -       -      +
     73B  LEU*     1.3    70.2    +      -       +      +
     75B  PHE*     3.1     6.5    +      -       -      +
     76B  THR*     2.9    45.1    +      -       +      +
    154C  ILE*     5.3     0.9    -      -       +      -
    158C  MET*     3.6    34.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 73 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69B  PRO      2.9    20.4    +      -       -      +
     70B  HIS*     3.6     8.5    -      -       +      +
     72B  LEU*     1.3    79.9    -      -       +      +
     74B  ILE*     1.3    65.0    +      -       +      +
     76B  THR*     2.5    23.9    +      -       -      +
     77B  MET*     2.9    38.0    +      -       +      +
     48F  PHE*     4.7    18.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 74 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63B  LEU*     4.5    18.2    -      -       +      -
     66B  LEU*     4.8    11.9    -      -       +      -
     70B  HIS*     2.9    27.9    +      -       +      +
     71B  THR*     3.1    10.7    +      -       -      +
     73B  LEU*     1.3    81.9    -      -       +      +
     75B  PHE*     1.3    70.5    +      -       +      +
     77B  MET*     3.8     3.4    -      -       -      +
     78B  SER*     2.9    27.8    +      -       -      -
     45F  PRO*     4.9    16.3    -      -       +      +
     48F  PHE*     4.0    32.8    -      -       +      +
     49F  ILE*     4.4    20.6    -      -       +      -
     52F  GLY*     6.1     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 75 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63B  LEU*     3.5    29.8    -      -       +      -
     71B  THR*     3.0    24.1    +      -       +      -
     72B  LEU*     3.7     6.1    -      -       -      +
     74B  ILE*     1.3    81.4    -      -       +      +
     76B  THR*     1.3    66.7    +      -       -      +
     78B  SER*     2.3    26.5    +      -       -      -
     79B  PHE*     3.0    13.4    +      -       +      -
    163B  MET*     3.3    39.7    -      -       +      -
    166B  CYS*     3.4    27.4    -      -       +      -
    167B  ILE*     3.4    43.5    -      -       +      -
    158C  MET*     4.1    20.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 76 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72B  LEU*     2.9    36.2    +      -       +      +
     73B  LEU*     2.5    30.1    +      -       -      +
     75B  PHE*     1.3    77.2    -      -       +      +
     77B  MET*     1.3    58.6    +      -       -      +
     79B  PHE*     3.1     8.9    +      -       -      +
     80B  LEU*     2.9    33.5    +      -       -      +
    154C  ILE*     3.6    38.4    -      -       +      -
    158C  MET*     5.2     2.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 77 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73B  LEU*     2.9    27.4    +      -       +      +
     74B  ILE*     4.0     3.6    -      -       -      +
     76B  THR*     1.3    78.6    +      -       -      +
     78B  SER*     1.3    59.3    +      -       -      +
     80B  LEU*     3.6    10.0    -      -       +      +
     81B  CYS*     2.9    32.5    +      -       +      +
     41F  PHE*     6.1     2.9    -      -       +      -
     44F  PHE*     3.6    36.6    -      -       +      -
     45F  PRO*     5.2     7.0    -      -       +      -
     48F  PHE*     3.6    34.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 78 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     74B  ILE*     2.9    14.9    +      -       -      -
     75B  PHE*     2.3    32.6    +      -       -      -
     77B  MET*     1.3    77.0    -      -       -      +
     79B  PHE*     1.3    59.0    +      -       -      +
     81B  CYS*     3.0    14.4    -      -       -      -
     82B  SER*     2.9    30.1    +      -       -      -
    159B  ILE*     4.0    18.0    -      -       -      +
    163B  MET*     3.6    17.3    -      -       -      -
     45F  PRO*     4.6    12.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 79 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75B  PHE      3.0    13.0    +      -       -      -
     76B  THR*     3.1    10.5    +      -       -      +
     78B  SER*     1.3    81.9    +      -       -      +
     80B  LEU*     1.3    59.3    +      -       +      +
     82B  SER*     3.4     2.1    +      -       -      -
     83B  TRP*     2.9    60.4    +      +       +      -
    128B  GLN*     4.8     7.2    -      -       -      -
    159B  ILE*     4.2    27.4    -      -       +      -
    160B  ASN*     4.8    12.6    -      -       +      -
    163B  MET*     3.8    31.6    -      -       +      -
    154C  ILE*     5.0     9.9    -      -       +      -
    157C  LEU*     3.5    39.9    -      -       +      -
    158C  MET*     4.5    15.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 80 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76B  THR*     2.9    21.4    +      -       -      +
     77B  MET*     3.6    15.3    -      -       +      +
     78B  SER      3.3     0.2    -      -       -      -
     79B  PHE*     1.3    77.3    -      -       -      +
     81B  CYS*     1.3    57.3    +      -       -      +
     83B  TRP*     3.2     9.4    +      -       +      +
     84B  LEU*     2.9    46.8    +      -       +      +
    121B  PHE*     4.6    10.5    -      -       +      -
    150C  ILE*     4.0    29.8    -      -       +      -
    154C  ILE*     3.5    27.1    -      -       +      -
     41F  PHE*     6.3     0.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with CYS 81 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77B  MET*     2.9    18.2    +      -       +      +
     78B  SER*     3.0    29.4    -      -       -      -
     80B  LEU*     1.3    76.9    -      -       -      +
     82B  SER*     1.3    60.0    +      -       -      +
     84B  LEU*     4.1     0.7    -      -       -      +
     85B  LEU*     2.9    33.8    +      -       -      +
    159B  ILE*     5.9     0.7    -      -       -      -
     41F  PHE*     3.5    55.0    -      -       +      +
     44F  PHE*     6.2     0.9    -      -       +      -
     45F  PRO*     4.2    13.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 82 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78B  SER      2.9    18.1    +      -       -      -
     79B  PHE*     3.8     3.6    -      -       -      -
     81B  CYS*     1.3    80.7    -      -       -      +
     83B  TRP*     1.3    60.6    +      -       -      +
     85B  LEU*     4.1     3.8    -      -       -      +
     86B  PHE*     3.1    40.8    +      -       -      -
    128B  GLN*     2.7    35.7    +      -       -      +
    155B  VAL*     4.3     7.8    -      -       -      +
    159B  ILE*     4.2    12.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 83 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     79B  PHE*     2.9    41.8    +      +       +      +
     80B  LEU*     3.7    14.1    -      -       +      +
     81B  CYS      3.2     0.2    -      -       -      -
     82B  SER*     1.3    78.5    -      -       -      +
     84B  LEU*     1.3    56.9    +      -       -      +
     85B  LEU      3.3     0.2    +      -       -      -
     86B  PHE*     3.5     0.5    +      -       -      -
     87B  ALA*     2.9    27.4    +      -       -      +
    121B  PHE*     3.9    14.8    -      +       +      -
    124B  SER*     3.6    15.4    -      -       -      -
    125B  ILE*     3.9    26.5    -      -       +      -
    128B  GLN*     2.9    45.3    -      -       +      +
    129B  VAL*     3.4    23.1    -      -       +      +
    150C  ILE*     3.9    30.7    -      -       +      -
    153C  ASN*     3.9    24.0    -      -       +      -
    154C  ILE*     4.3    16.2    -      -       +      -
    157C  LEU*     4.7     6.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 84 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80B  LEU*     2.9    31.9    +      -       +      +
     81B  CYS      4.1     1.8    -      -       -      +
     83B  TRP*     1.3    76.0    -      -       -      +
     85B  LEU*     1.3    63.9    +      -       -      +
     87B  ALA*     3.3     4.1    -      -       -      +
     88B  MET*     2.9    24.6    +      -       -      +
    117B  PHE*     4.3    21.6    -      -       +      -
    121B  PHE*     3.6    28.3    -      -       +      -
     37F  VAL*     5.0     2.7    -      -       +      +
     41F  PHE*     3.7    39.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 85 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     81B  CYS      2.9    19.4    +      -       -      +
     82B  SER*     4.1     5.4    -      -       -      +
     84B  LEU*     1.3    77.7    -      -       -      +
     86B  PHE*     1.3    82.5    +      -       +      +
     88B  MET*     3.2     7.4    +      -       -      +
     89B  ALA*     3.0    26.3    +      -       +      +
     37F  VAL*     4.8     9.8    -      -       +      +
     38F  PHE*     4.4    41.7    -      -       +      +
     41F  PHE*     4.8    12.0    -      -       +      -
     42F  ILE*     5.5     4.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 86 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82B  SER*     3.1    28.9    -      -       -      +
     83B  TRP      3.5     1.2    +      -       -      +
     84B  LEU      3.4     0.2    -      -       -      -
     85B  LEU*     1.3    91.1    -      -       +      +
     87B  ALA*     1.3    60.0    +      -       -      +
     89B  ALA*     3.3     8.3    -      -       +      +
     90B  TRP*     2.8    35.7    +      -       -      +
    124B  SER*     3.3     2.0    -      -       -      +
    148B  ILE*     4.5    16.2    -      -       +      -
    151B  VAL*     3.7    18.2    -      -       +      -
    152B  GLN*     3.3    66.9    -      -       +      +
    155B  VAL*     4.0    35.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 87 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83B  TRP      2.9    16.0    +      -       -      +
     84B  LEU*     3.1    10.3    +      -       -      +
     86B  PHE*     1.3    74.5    -      -       -      +
     88B  MET*     1.3    65.6    +      -       -      +
     90B  TRP*     3.3     0.4    +      -       -      -
     91B  TRP*     2.9    25.5    +      -       -      +
    117B  PHE*     3.7    10.8    -      -       +      -
    120B  ALA*     3.5     8.0    -      -       -      +
    121B  PHE*     3.6    39.5    -      -       +      -
    124B  SER*     3.0    10.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 88 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84B  LEU      2.9    12.6    +      -       -      +
     85B  LEU      3.4     9.2    -      -       -      +
     87B  ALA*     1.3    75.5    -      -       -      +
     89B  ALA*     1.3    57.9    -      -       -      +
     91B  TRP*     3.5    33.6    -      -       +      +
     92B  LEU*     2.9    33.2    +      -       -      +
    117B  PHE*     3.6    22.1    -      -       +      -
     30F  ALA      5.6     0.7    -      -       -      +
     33F  VAL*     4.5    12.1    -      -       +      -
     34F  VAL*     4.2    28.9    -      -       +      -
     37F  VAL*     4.0    37.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 89 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85B  LEU*     3.0    16.2    +      -       +      +
     86B  PHE*     3.3    18.2    -      -       +      +
     87B  ALA      3.1     0.2    -      -       -      -
     88B  MET*     1.3    77.7    -      -       -      +
     90B  TRP*     1.3    63.9    +      -       -      +
     92B  LEU*     3.2     7.6    +      -       -      +
     93B  ILE*     2.9    29.1    +      -       +      +
    148B  ILE*     4.5    25.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 90 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86B  PHE      2.8    31.2    +      -       -      +
     87B  ALA      3.9     2.9    -      -       -      +
     89B  ALA*     1.3    72.5    -      -       -      +
     91B  TRP*     1.3    63.7    +      -       -      +
     93B  ILE*     3.1    10.0    +      -       +      +
     94B  ALA*     2.9    24.4    +      -       -      +
    110B  CYS*     6.2     0.7    -      -       +      -
    111B  VAL*     4.9    12.7    -      -       +      +
    114B  ILE*     4.3     6.1    -      -       +      +
    120B  ALA*     4.1    11.9    -      -       +      -
    123B  PHE*     3.3    40.3    -      +       +      -
    124B  SER*     3.1    16.3    +      -       -      +
    138B  VAL*     4.4     9.2    -      -       +      -
    145B  ALA*     3.1    48.0    -      -       +      -
    148B  ILE*     3.4    23.1    -      -       +      +
    149B  LEU*     3.5    27.6    -      -       +      -
    152B  GLN*     2.8    23.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 91 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     87B  ALA      2.9    19.0    +      -       -      +
     88B  MET*     3.5    33.7    -      -       +      +
     90B  TRP*     1.3    77.0    -      -       -      +
     92B  LEU*     1.3    75.0    +      -       +      +
     94B  ALA*     3.3     5.7    +      -       +      +
     95B  PHE*     2.9    31.8    +      +       +      +
    100B  LEU*     3.7    27.8    -      -       +      +
    114B  ILE*     4.8     2.7    -      -       +      -
    116B  SER*     4.2     5.5    -      -       -      +
    117B  PHE*     3.7    43.5    -      +       +      +
    120B  ALA*     3.5    13.1    -      -       +      +
      5F  PHE*     3.9    41.3    -      +       +      -
     16F  ARG*     6.3     0.2    -      -       -      -
     30F  ALA*     4.1    24.0    -      -       +      -
     33F  VAL*     6.5     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 92 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     88B  MET*     2.9    19.0    +      -       +      +
     89B  ALA*     3.6     7.2    -      -       -      +
     91B  TRP*     1.3    84.7    -      -       +      +
     93B  ILE*     1.3    63.5    +      -       +      +
     95B  PHE*     3.2     7.7    +      -       +      +
     96B  ALA*     2.8    28.8    +      -       +      +
     27F  PHE*     4.0    25.6    -      -       +      -
     30F  ALA*     4.8     9.4    -      -       +      -
     31F  LEU*     4.2    26.0    -      -       +      +
     34F  VAL*     3.7    33.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 93 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     89B  ALA      2.9    22.5    +      -       -      +
     90B  TRP*     3.1    13.9    +      -       +      +
     92B  LEU*     1.3    81.6    -      -       +      +
     94B  ALA*     1.3    66.4    +      -       -      +
     96B  ALA*     3.2     7.6    +      -       +      +
     97B  HIS*     2.9    23.0    +      -       -      +
    110B  CYS*     3.7    26.9    -      -       +      -
    142B  CYS*     5.1     0.4    -      -       +      -
    144B  LEU*     3.7    28.9    -      -       +      -
    145B  ALA*     4.5    15.7    -      -       +      +
    148B  ILE*     4.6    13.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 94 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     90B  TRP      2.9     7.5    +      -       -      +
     91B  TRP*     3.7     7.0    -      -       +      +
     93B  ILE*     1.3    78.8    -      -       -      +
     95B  PHE*     1.3    59.7    +      -       -      +
     97B  HIS*     3.5     4.9    +      -       -      -
     99B  ASP*     3.0    43.7    +      -       +      +
    100B  LEU*     4.0    10.0    +      -       +      -
    110B  CYS*     5.1     4.9    -      -       +      -
    111B  VAL*     5.0     5.1    -      -       +      +
    114B  ILE*     3.4    37.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 95 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     91B  TRP*     2.9    28.0    +      +       +      +
     92B  LEU*     3.7     8.5    -      -       +      +
     93B  ILE      3.1     0.2    -      -       -      -
     94B  ALA*     1.3    76.8    -      -       -      +
     96B  ALA*     1.3    62.6    -      -       -      +
     98B  GLY*     3.2    10.3    +      -       -      -
     99B  ASP      4.8     0.7    -      -       -      +
    100B  LEU*     3.5    29.1    -      -       +      +
      5F  PHE*     5.4     4.5    -      +       -      -
      6F  CYS*     5.1     0.7    -      -       -      -
     16F  ARG*     3.3    43.0    -      -       +      +
     18F  ASP*     3.6     9.8    -      -       -      +
     24F  ASN*     3.7    21.3    -      -       -      -
     26F  CYS*     3.9    12.8    -      -       +      -
     27F  PHE*     3.5    49.2    -      +       +      -
     30F  ALA*     5.1     9.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 96 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     92B  LEU*     2.8    18.1    +      -       +      +
     93B  ILE*     3.8     9.2    -      -       +      +
     95B  PHE*     1.3    71.4    -      -       -      +
     97B  HIS*     1.3    58.0    +      -       -      +
     98B  GLY      3.0     5.4    -      -       -      -
     18F  ASP*     3.0    16.9    -      -       -      +
     21F  VAL*     4.1    16.2    -      -       +      +
     27F  PHE*     3.6    28.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 97 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93B  ILE      2.9    17.3    +      -       -      +
     94B  ALA      3.8     5.4    -      -       -      +
     95B  PHE      3.3     0.2    -      -       -      -
     96B  ALA*     1.3    75.7    -      -       -      +
     98B  GLY*     1.3    61.9    +      -       -      +
     99B  ASP*     3.6    17.8    -      -       +      +
    107B  ALA*     4.9    12.3    -      -       +      -
    108B  GLU      3.1    27.9    +      -       -      -
    109B  PRO*     4.1     4.9    -      -       +      -
    110B  CYS*     3.5    13.9    +      -       -      -
    141B  GLU*     4.7     7.5    +      -       -      +
    142B  CYS*     3.3    26.5    -      -       -      -
     18F  ASP*     4.1     0.4    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il