Contacts of the helix formed by residues 67 - 97 (chain C) in PDB entry 6C3P


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LYS 67 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66C  LEU*     1.3    82.5    -      -       -      +
     68C  TRP*     1.3    70.4    +      -       -      +
     69C  PRO*     3.5    22.2    -      -       +      +
     70C  HIS*     3.2    35.7    +      -       +      +
     71C  THR*     3.1    18.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 68 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66C  LEU      3.4     2.6    +      -       -      -
     67C  LYS*     1.3    72.1    -      -       -      +
     69C  PRO*     1.3    73.7    -      -       +      +
     71C  THR*     3.1     4.7    +      -       +      -
     72C  LEU*     2.9    24.3    +      -       -      +
    167C  ILE*     5.4     8.7    -      -       +      -
    170C  LYS*     3.4    62.2    -      -       +      +
    171C  THR*     4.2     2.2    -      -       -      -
    173C  GLN*     5.5     3.8    -      -       +      -
     55D  PHE*     5.0    19.5    -      +       -      -
     56D  LEU*     5.3    10.2    +      -       +      -
     57D  GLN*     5.6     7.0    -      -       +      +
     60D  PHE*     3.5    38.4    -      +       -      -
    162D  ILE*     5.0     9.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with PRO 69 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67C  LYS*     3.5    32.8    -      -       +      +
     68C  TRP*     1.3    94.2    -      -       +      +
     70C  HIS*     1.3    61.1    +      -       +      +
     72C  LEU*     3.5    10.6    -      -       +      +
     73C  LEU*     2.9    31.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 70 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66C  LEU*     3.3    20.6    -      -       +      -
     67C  LYS*     3.2    47.3    +      -       +      +
     69C  PRO*     1.3    79.8    -      -       +      +
     71C  THR*     1.3    58.5    +      -       -      +
     73C  LEU*     3.3     8.1    +      -       +      +
     74C  ILE*     2.9    38.1    +      -       +      +
     52G  GLY*     3.4    42.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 71 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  LEU*     3.8    14.1    +      -       +      +
     66C  LEU*     3.1    29.0    -      -       -      +
     67C  LYS      3.1     6.9    +      -       -      -
     68C  TRP*     3.6     7.4    -      -       +      -
     70C  HIS*     1.3    74.0    -      -       -      +
     72C  LEU*     1.3    66.7    +      -       -      +
     74C  ILE*     3.1    10.3    +      -       -      +
     75C  PHE*     3.0    51.1    +      -       +      -
    166C  CYS      6.5     0.2    -      -       -      -
    167C  ILE*     5.0     3.4    -      -       +      -
    170C  LYS*     3.7    28.2    +      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 72 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68C  TRP*     2.9    13.9    +      -       +      +
     69C  PRO*     3.5    14.8    -      -       +      +
     71C  THR*     1.3    77.1    -      -       -      +
     73C  LEU*     1.3    69.4    +      -       +      +
     75C  PHE*     3.1     6.0    +      -       -      +
     76C  THR*     2.9    47.4    +      -       +      +
    154D  ILE*     5.1     1.1    -      -       +      -
    158D  MET*     3.7    32.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 73 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69C  PRO      2.9    21.5    +      -       -      +
     70C  HIS*     3.6     8.1    -      -       +      +
     72C  LEU*     1.3    79.9    -      -       +      +
     74C  ILE*     1.3    63.8    +      -       +      +
     76C  THR*     2.5    24.2    +      -       -      +
     77C  MET*     2.9    38.9    +      -       +      +
     48G  PHE*     4.6    20.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 74 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  LEU*     4.5    12.8    -      -       +      -
     66C  LEU*     4.8    11.2    -      -       +      -
     70C  HIS*     2.9    27.7    +      -       +      +
     71C  THR*     3.1    11.0    +      -       -      +
     73C  LEU*     1.3    80.6    -      -       +      +
     75C  PHE*     1.3    71.3    +      -       +      +
     77C  MET*     3.4     3.6    +      -       -      +
     78C  SER*     2.9    27.8    +      -       -      -
     45G  PRO*     4.8    18.1    -      -       +      +
     48G  PHE*     3.8    34.8    -      -       +      +
     49G  ILE*     4.2    25.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 75 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63C  LEU*     3.5    30.1    -      -       +      -
     71C  THR*     3.0    23.0    +      -       +      -
     72C  LEU*     3.7     6.1    -      -       -      +
     74C  ILE*     1.3    81.7    -      -       +      +
     76C  THR*     1.3    65.2    +      -       -      +
     78C  SER*     2.3    25.6    +      -       -      -
     79C  PHE*     3.0    13.7    +      -       +      -
    163C  MET*     3.3    39.5    -      -       +      -
    166C  CYS*     3.4    27.1    -      -       +      -
    167C  ILE*     3.4    42.4    -      -       +      -
    158D  MET*     4.2    21.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 76 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72C  LEU*     2.9    34.9    +      -       +      +
     73C  LEU*     2.5    30.3    +      -       -      +
     75C  PHE*     1.3    77.0    -      -       +      +
     77C  MET*     1.3    59.1    +      -       -      +
     79C  PHE*     3.1     7.6    +      -       -      +
     80C  LEU*     2.9    34.2    +      -       -      +
    154D  ILE*     3.5    41.1    -      -       +      -
    158D  MET*     5.4     1.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 77 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73C  LEU*     2.9    26.4    +      -       +      +
     74C  ILE*     4.0     3.6    -      -       -      +
     76C  THR*     1.3    79.0    +      -       -      +
     78C  SER*     1.3    60.5    +      -       -      +
     80C  LEU*     3.6     9.8    -      -       +      +
     81C  CYS*     2.9    32.1    +      -       +      +
     41G  PHE*     6.0     4.3    -      -       +      -
     44G  PHE*     3.4    38.8    -      -       +      -
     45G  PRO*     5.1     6.5    -      -       +      -
     48G  PHE*     3.5    35.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 78 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     74C  ILE*     2.9    15.6    +      -       -      -
     75C  PHE*     2.3    32.6    +      -       -      -
     77C  MET*     1.3    77.9    -      -       -      +
     79C  PHE*     1.3    58.9    +      -       -      +
     81C  CYS*     3.0    13.8    -      -       -      -
     82C  SER*     2.9    30.5    +      -       -      -
    159C  ILE*     4.0    17.4    -      -       -      +
    163C  MET*     3.6    18.0    -      -       -      -
     45G  PRO*     4.5    13.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 79 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75C  PHE      3.0    13.2    +      -       -      -
     76C  THR*     3.5    10.8    -      -       -      +
     78C  SER*     1.3    83.1    +      -       -      +
     80C  LEU*     1.3    58.9    +      -       +      +
     82C  SER*     3.4     2.1    +      -       -      -
     83C  TRP*     2.9    59.7    +      +       +      -
    128C  GLN*     4.8     7.6    -      -       -      -
    159C  ILE*     4.2    27.1    -      -       +      -
    160C  ASN*     4.8    12.1    -      -       +      -
    163C  MET*     3.8    32.3    -      -       +      -
    154D  ILE*     4.9    10.8    -      -       +      -
    157D  LEU*     3.5    39.7    -      -       +      -
    158D  MET*     4.7    13.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 80 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76C  THR*     2.9    22.5    +      -       -      +
     77C  MET*     3.6    15.3    -      -       +      +
     78C  SER      3.3     0.2    -      -       -      -
     79C  PHE*     1.3    78.6    -      -       -      +
     81C  CYS*     1.3    58.3    +      -       -      +
     83C  TRP*     3.2     8.3    +      -       +      +
     84C  LEU*     2.9    46.4    +      -       +      +
    121C  PHE*     4.6    11.2    -      -       +      -
    150D  ILE*     4.0    30.1    -      -       +      -
    154D  ILE*     3.7    24.9    -      -       +      -
     41G  PHE*     6.1     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with CYS 81 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77C  MET*     2.9    18.0    +      -       +      +
     78C  SER*     3.0    28.7    -      -       -      -
     80C  LEU*     1.3    75.5    -      -       -      +
     82C  SER*     1.3    59.5    +      -       -      +
     84C  LEU*     4.1     0.6    -      -       -      +
     85C  LEU*     2.9    34.2    +      -       -      +
    159C  ILE*     5.9     0.7    -      -       -      -
     41G  PHE*     3.4    57.3    -      -       +      +
     44G  PHE*     6.2     0.9    -      -       +      -
     45G  PRO*     4.2    11.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 82 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78C  SER      2.9    18.1    +      -       -      -
     79C  PHE      3.8     3.6    -      -       -      -
     81C  CYS*     1.3    80.6    -      -       -      +
     83C  TRP*     1.3    61.0    +      -       -      +
     85C  LEU*     4.1     4.0    -      -       -      +
     86C  PHE*     3.1    40.2    +      -       -      -
    128C  GLN*     2.7    34.8    +      -       -      +
    155C  VAL*     4.3     8.4    -      -       -      +
    159C  ILE*     4.2    13.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 83 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     79C  PHE*     2.9    46.7    +      +       +      +
     80C  LEU*     3.7    17.5    -      -       +      +
     82C  SER*     1.3    78.9    -      -       -      +
     84C  LEU*     1.3    57.7    +      -       -      +
     85C  LEU      3.3     0.2    +      -       -      -
     86C  PHE      3.5     0.2    +      -       -      -
     87C  ALA*     2.9    27.2    +      -       -      +
    121C  PHE*     3.9    14.4    -      +       +      -
    124C  SER*     3.6    13.5    -      -       -      -
    125C  ILE*     3.9    26.2    -      -       +      -
    128C  GLN*     2.9    46.6    -      -       +      +
    129C  VAL*     3.4    23.6    -      -       +      +
    150D  ILE*     3.9    31.0    -      -       +      -
    153D  ASN*     3.9    23.3    -      -       +      -
    154D  ILE*     4.4     9.2    -      -       +      -
    157D  LEU*     4.9     5.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 84 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80C  LEU*     2.9    30.8    +      -       +      +
     81C  CYS      4.1     2.7    -      -       -      +
     83C  TRP*     1.3    77.1    -      -       -      +
     85C  LEU*     1.3    62.2    +      -       -      +
     87C  ALA*     3.3     4.3    -      -       -      +
     88C  MET*     2.9    23.9    +      -       -      +
    117C  PHE*     4.3    21.0    -      -       +      -
    121C  PHE*     3.6    28.5    -      -       +      -
     37G  VAL*     4.9     2.6    -      -       -      +
     41G  PHE*     3.5    41.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 85 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     81C  CYS      2.9    18.6    +      -       -      +
     82C  SER*     4.1     5.2    -      -       -      +
     83C  TRP      3.3     0.4    -      -       -      -
     84C  LEU*     1.3    79.0    -      -       -      +
     86C  PHE*     1.3    82.3    +      -       +      +
     88C  MET*     3.2     4.9    +      -       -      +
     89C  ALA*     3.0    26.3    +      -       +      +
     37G  VAL*     4.6    13.7    -      -       +      +
     38G  PHE*     4.2    42.6    -      -       +      +
     41G  PHE*     4.9    10.5    -      -       +      -
     42G  ILE*     5.5     4.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 86 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82C  SER*     3.1    28.9    -      -       -      +
     83C  TRP      3.5     1.4    +      -       -      +
     85C  LEU*     1.3    90.5    -      -       +      +
     87C  ALA*     1.3    59.9    +      -       -      +
     89C  ALA*     3.3     7.9    -      -       +      +
     90C  TRP*     2.8    35.6    +      -       -      +
    124C  SER*     3.3     2.2    -      -       -      -
    148C  ILE*     4.5    15.5    -      -       +      -
    151C  VAL*     3.7    17.5    -      -       +      -
    152C  GLN*     3.3    68.4    -      -       +      +
    155C  VAL*     4.0    34.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 87 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83C  TRP      2.9    15.8    +      -       -      +
     84C  LEU*     3.1    10.0    +      -       -      +
     86C  PHE*     1.3    73.7    -      -       -      +
     88C  MET*     1.3    66.0    +      -       -      +
     90C  TRP*     3.3     0.4    +      -       -      -
     91C  TRP*     2.9    25.6    +      -       -      +
    117C  PHE*     3.7    10.8    -      -       +      -
    120C  ALA*     3.5     7.2    -      -       -      +
    121C  PHE*     3.6    39.9    -      -       +      -
    124C  SER*     3.0    10.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 88 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84C  LEU      2.9    12.6    +      -       -      +
     85C  LEU      3.4     9.0    -      -       -      +
     87C  ALA*     1.3    74.8    -      -       -      +
     89C  ALA*     1.3    58.2    +      -       -      +
     91C  TRP*     3.5    34.3    -      -       +      +
     92C  LEU*     2.9    33.4    +      -       -      +
    117C  PHE*     3.6    22.5    -      -       +      -
     30G  ALA      5.4     2.0    -      -       -      +
     33G  VAL*     4.4    13.0    -      -       +      -
     34G  VAL*     4.0    29.4    -      -       +      -
     37G  VAL*     3.9    36.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 89 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85C  LEU*     3.0    16.1    +      -       +      +
     86C  PHE*     3.3    17.7    -      -       +      +
     87C  ALA      3.1     0.2    -      -       -      -
     88C  MET*     1.3    77.4    -      -       -      +
     90C  TRP*     1.3    65.3    +      -       -      +
     92C  LEU*     3.2     6.3    +      -       -      +
     93C  ILE*     2.9    29.9    +      -       +      +
    148C  ILE*     4.5    24.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 90 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86C  PHE*     2.8    29.7    +      -       +      +
     87C  ALA      3.9     2.7    -      -       -      +
     89C  ALA*     1.3    73.5    -      -       -      +
     91C  TRP*     1.3    64.2    +      -       -      +
     93C  ILE*     3.1     9.9    +      -       +      +
     94C  ALA*     2.9    24.3    +      -       -      +
    110C  CYS*     6.2     0.4    -      -       +      -
    111C  VAL*     4.9    12.5    -      -       +      +
    114C  ILE*     4.3     6.0    -      -       +      +
    120C  ALA*     4.1    12.1    -      -       +      -
    123C  PHE*     3.3    38.9    -      +       +      -
    124C  SER*     3.1    16.6    -      -       -      +
    127C  VAL*     5.1     0.2    -      -       +      -
    138C  VAL*     4.4     9.0    -      -       +      -
    145C  ALA*     3.1    47.8    -      -       +      -
    148C  ILE*     3.4    23.5    -      -       +      +
    149C  LEU*     3.5    26.7    -      -       +      -
    152C  GLN*     2.8    24.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 91 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     87C  ALA      2.9    17.1    +      -       -      +
     88C  MET*     3.5    33.4    -      -       +      +
     90C  TRP*     1.3    77.1    -      -       -      +
     92C  LEU*     1.3    74.5    +      -       +      +
     94C  ALA*     3.3     6.5    +      -       +      +
     95C  PHE*     2.9    32.1    +      +       +      +
    100C  LEU*     3.7    26.2    -      -       +      +
    114C  ILE*     4.8     2.0    -      -       +      -
    116C  SER*     4.2     5.7    -      -       -      +
    117C  PHE*     3.7    44.3    -      +       +      +
    120C  ALA*     3.5    14.0    -      -       +      +
      5G  PHE*     3.8    42.8    -      +       +      -
     16G  ARG*     6.2     0.7    -      -       -      -
     30G  ALA*     3.9    25.4    -      -       +      -
     33G  VAL*     6.4     0.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 92 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     88C  MET      2.9    19.2    +      -       -      +
     89C  ALA*     3.6     6.5    -      -       -      +
     91C  TRP*     1.3    83.6    -      -       +      +
     93C  ILE*     1.3    63.7    +      -       +      +
     95C  PHE*     3.2     7.1    +      -       +      +
     96C  ALA*     2.8    28.6    +      -       +      +
     27G  PHE*     3.9    28.5    -      -       +      -
     30G  ALA*     4.7     9.2    -      -       +      -
     31G  LEU*     4.0    32.5    -      -       +      +
     34G  VAL*     3.7    28.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 93 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     89C  ALA*     2.9    22.1    +      -       -      +
     90C  TRP*     3.1    14.6    +      -       +      +
     92C  LEU*     1.3    80.9    -      -       +      +
     94C  ALA*     1.3    65.6    +      -       -      +
     96C  ALA*     3.2     8.0    +      -       +      +
     97C  HIS*     2.9    23.2    +      -       -      +
    110C  CYS*     3.7    27.1    -      -       +      -
    142C  CYS*     5.1     0.4    -      -       +      -
    144C  LEU*     3.7    29.4    -      -       +      -
    145C  ALA*     4.5    15.0    -      -       +      +
    148C  ILE*     4.6    12.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 94 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     90C  TRP      2.9     7.2    +      -       -      +
     91C  TRP*     3.7     6.7    -      -       +      +
     93C  ILE*     1.3    78.6    -      -       -      +
     95C  PHE*     1.3    61.2    +      -       -      +
     97C  HIS*     3.5     5.1    +      -       -      -
     99C  ASP*     3.0    43.9    +      -       +      +
    100C  LEU*     4.0    10.4    +      -       +      -
    110C  CYS*     5.1     5.2    -      -       +      -
    111C  VAL*     5.0     4.5    -      -       +      +
    114C  ILE*     3.4    37.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 95 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     91C  TRP*     2.9    26.7    +      +       +      +
     92C  LEU*     3.7     8.1    -      -       +      +
     93C  ILE      3.1     0.2    -      -       -      -
     94C  ALA*     1.3    76.1    -      -       -      +
     96C  ALA*     1.3    62.3    +      -       -      +
     98C  GLY*     3.2    10.6    +      -       -      +
     99C  ASP      4.8     0.7    -      -       -      +
    100C  LEU*     3.5    28.7    -      -       +      +
      5G  PHE*     5.4     4.0    -      +       -      -
      6G  CYS*     5.1     0.2    -      -       -      -
     16G  ARG*     3.3    41.4    -      -       +      +
     18G  ASP*     3.4    10.7    -      -       -      +
     24G  ASN*     3.5    20.0    -      -       -      -
     26G  CYS*     3.8    16.8    -      -       +      -
     27G  PHE*     3.4    51.9    -      +       +      -
     30G  ALA*     5.1     9.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 96 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     92C  LEU*     2.8    17.9    +      -       +      +
     93C  ILE*     3.8     9.4    -      -       +      +
     95C  PHE*     1.3    73.1    -      -       -      +
     97C  HIS*     1.3    58.1    +      -       -      +
     98C  GLY      3.0     5.3    +      -       -      -
     18G  ASP*     2.9    16.1    -      -       -      +
     21G  VAL*     3.9    18.8    -      -       +      +
     27G  PHE*     3.5    29.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 97 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     93C  ILE*     2.9    17.1    +      -       +      +
     94C  ALA      3.8     6.1    -      -       -      +
     95C  PHE      3.3     0.2    -      -       -      -
     96C  ALA*     1.3    74.8    -      -       -      +
     98C  GLY*     1.3    61.4    +      -       -      +
     99C  ASP*     3.6    17.6    +      -       +      +
    107C  ALA*     4.9    12.1    -      -       +      -
    108C  GLU      3.1    28.9    +      -       -      -
    109C  PRO*     4.1     4.5    -      -       +      -
    110C  CYS*     3.5    14.1    +      -       -      -
    141C  GLU*     4.7     6.8    +      -       -      +
    142C  CYS*     3.3    26.9    -      -       -      -
     18G  ASP*     3.9     0.4    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il