Contacts of the strand formed by residues 210 - 224 (chain C) in PDB entry 6C3P


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ILE 210 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    177C  ARG*     4.2    12.9    -      -       +      +
    181C  LEU*     5.3    17.0    -      -       +      -
    204C  ASP*     4.7     9.4    -      -       -      +
    208C  SER      4.0     1.4    +      -       -      -
    209C  MET*     1.3    87.2    -      -       -      +
    211C  ILE*     1.3    61.9    +      -       -      +
    212C  SER      4.2     0.7    +      -       -      -
    213C  ALA*     3.6    25.3    +      -       +      +
    250C  PHE*     5.7     2.4    -      -       -      -
    251C  LEU*     4.8    18.4    +      -       +      +
    287C  LEU*     5.9     4.7    -      -       +      -
    288C  GLU      5.2     0.2    -      -       -      -
    289C  GLY*     3.4    33.2    -      -       -      +
    290C  VAL      3.2    18.8    -      -       -      +
    291C  VAL*     3.8     6.3    -      -       +      +
    298C  THR*     4.1    16.4    -      -       +      -
    288D  GLU*     5.1     0.3    -      -       -      +
    299D  GLN*     4.0     3.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 211 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209C  MET*     3.6     8.7    -      -       +      +
    210C  ILE*     1.3    71.8    -      -       -      +
    212C  SER*     1.3    77.8    +      -       -      +
    213C  ALA      3.1     1.8    -      -       -      -
    289C  GLY*     3.1     2.6    -      -       -      -
    290C  VAL*     2.7    56.9    +      -       +      +
    291C  VAL      4.0     2.9    -      -       -      +
    292C  GLU*     3.5    32.3    -      -       +      +
    288D  GLU*     3.7    21.3    -      -       +      +
    297D  THR*     3.7    33.0    -      -       +      +
    298D  THR*     5.7     0.2    -      -       -      -
    299D  GLN*     3.5    31.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 212 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210C  ILE      4.2     0.4    +      -       -      -
    211C  ILE*     1.3    82.4    -      -       -      +
    213C  ALA*     1.3    58.0    +      -       -      +
    214C  THR*     2.7    26.3    +      -       -      -
    248C  SER*     4.3    10.6    +      -       -      -
    249C  ILE      5.2     2.6    +      -       -      -
    288C  GLU      3.1     6.6    -      -       -      +
    289C  GLY*     4.0     1.4    -      -       -      -
    290C  VAL*     5.3     5.4    -      -       -      -
    216D  HIS*     6.3     0.4    -      -       -      -
    288D  GLU*     3.3    25.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 213 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210C  ILE*     3.6    30.0    +      -       +      +
    211C  ILE      3.1     3.9    -      -       -      -
    212C  SER*     1.3    72.7    -      -       -      +
    214C  THR*     1.3    56.7    +      -       -      +
    248C  SER*     3.2     2.8    -      -       -      -
    249C  ILE*     2.6    63.0    +      -       +      +
    250C  PHE*     5.5     0.2    -      -       -      -
    251C  LEU*     5.1     3.1    -      -       +      +
    287C  LEU*     4.2    11.4    -      -       +      -
    288C  GLU      3.4     7.2    -      -       -      -
    289C  GLY*     4.3     2.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 214 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    212C  SER*     2.7    23.4    +      -       -      -
    213C  ALA*     1.3    73.2    -      -       -      +
    215C  ILE*     1.3    65.6    +      -       -      +
    216C  HIS*     3.3    29.3    +      -       +      +
    247C  ASN*     3.2    23.3    -      -       +      +
    248C  SER*     3.5    12.3    +      -       -      +
    286C  ILE      3.4     5.5    -      -       -      +
    287C  LEU*     3.4     2.8    -      -       -      +
    288C  GLU*     2.8    38.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 215 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    183C  PHE*     5.7     1.1    -      -       +      -
    202C  VAL*     5.3     5.4    -      -       +      -
    214C  THR*     1.3    73.0    -      -       -      +
    216C  HIS*     1.3    66.7    +      -       -      +
    217C  MET*     3.8    27.6    -      -       +      +
    240C  MET*     3.6    16.3    -      -       +      +
    247C  ASN*     2.7    38.0    +      -       -      +
    249C  ILE*     3.9    28.0    -      -       +      -
    257C  ILE*     3.9    31.6    -      -       +      -
    285C  VAL*     5.0     9.9    -      -       +      -
    286C  ILE      3.3     7.4    -      -       -      +
    287C  LEU*     3.6    30.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 216 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    212B  SER*     6.1     1.1    -      -       -      -
    244B  VAL*     6.4     2.2    -      -       +      -
    248B  SER*     3.9    31.0    +      -       -      -
    249B  ILE      6.5     0.2    -      -       -      -
    250B  PHE*     6.2     1.3    -      -       +      -
    214C  THR*     3.3    32.6    +      -       +      +
    215C  ILE*     1.3    75.5    +      -       -      +
    217C  MET*     1.3    67.9    +      -       -      +
    218C  GLN*     4.1     4.9    -      -       -      +
    237C  ASP*     5.5    11.9    -      -       +      +
    238C  ILE      5.6     0.2    -      -       -      -
    247C  ASN*     4.5    14.7    +      -       -      +
    284C  ILE      3.2     4.7    -      -       -      +
    286C  ILE*     3.0    55.9    +      -       +      +
    288C  GLU*     4.5    12.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 217 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    198C  PHE*     4.5    14.4    -      -       -      -
    200C  LEU*     3.9    15.9    -      -       -      -
    215C  ILE*     3.8    15.5    -      -       +      +
    216C  HIS*     1.3    74.3    -      -       -      +
    218C  GLN*     1.3    59.6    +      -       -      +
    237C  ASP*     3.7     4.0    -      -       -      +
    238C  ILE*     3.0    42.5    +      -       +      +
    239C  PRO      4.4     0.2    -      -       -      +
    240C  MET*     3.5    39.4    -      -       +      +
    247C  ASN*     5.9     0.4    -      -       -      +
    257C  ILE*     3.6    15.9    -      -       +      -
    258C  TYR      3.8     9.0    -      -       -      -
    259C  HIS*     3.7    24.7    -      -       +      -
    283C  ILE*     4.5     4.9    -      -       +      -
    284C  ILE      3.3     6.3    -      -       -      +
    285C  VAL*     4.4    14.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 218 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249B  ILE*     5.7     0.6    -      -       -      +
    250B  PHE*     3.1    39.4    +      -       -      +
    216C  HIS*     4.1     5.8    -      -       -      +
    217C  MET*     1.3    76.7    -      -       -      +
    219C  VAL*     1.3    60.7    +      -       -      +
    220C  VAL*     4.6     4.0    -      -       +      -
    235C  GLN*     3.1    40.9    +      -       +      +
    236C  VAL      3.4    16.8    -      -       -      +
    237C  ASP*     3.0    27.0    +      -       -      +
    238C  ILE*     3.7     0.8    -      -       -      +
    283C  ILE*     4.0     1.9    -      -       -      +
    284C  ILE*     2.2    54.0    +      -       +      +
    286C  ILE*     4.0     4.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 219 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    218C  GLN*     1.3    72.7    -      -       -      +
    220C  VAL*     1.3    65.8    +      -       -      +
    221C  ARG*     4.5     8.1    -      -       +      +
    234C  HIS      3.9     0.2    -      -       -      +
    235C  GLN*     3.6     0.3    -      -       -      -
    236C  VAL*     2.9    54.0    +      -       +      +
    238C  ILE*     4.0    10.1    -      -       +      +
    266C  PRO*     4.2    12.3    -      -       +      -
    267C  LEU*     3.9    26.7    -      -       +      -
    281C  LEU*     4.0    17.5    -      -       +      -
    282C  GLU      3.2    11.9    -      -       -      +
    283C  ILE*     3.7    21.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 220 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    250B  PHE*     6.6     0.2    -      -       +      -
     35C  PHE*     4.7    10.1    -      -       +      -
    218C  GLN*     4.0     4.5    -      -       +      +
    219C  VAL*     1.3    83.4    -      -       -      +
    221C  ARG*     1.3    63.2    -      -       -      +
    233C  LEU*     5.2    11.9    -      -       +      -
    234C  HIS      3.0    14.8    -      -       -      +
    235C  GLN*     3.6    24.2    -      -       +      +
    281C  LEU      3.9     1.2    -      -       -      -
    282C  GLU*     2.5    61.2    +      -       +      +
    284C  ILE*     3.6    31.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 221 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    219C  VAL*     4.5    11.5    -      -       -      +
    220C  VAL*     1.3    75.4    -      -       -      +
    222C  LYS*     1.3    62.5    +      -       -      +
    223C  THR*     3.8    26.9    -      -       +      +
    232C  PRO      3.4     5.8    -      -       -      -
    233C  LEU*     4.7     3.3    -      -       -      +
    234C  HIS*     2.8    35.1    +      -       +      +
    266C  PRO*     4.2    26.5    +      -       -      +
    267C  LEU*     4.8     6.3    -      -       -      +
    270C  LEU*     5.7     3.0    -      -       -      +
    280C  ASP*     3.2    30.4    +      -       -      +
    281C  LEU*     3.4    28.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 222 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    221C  ARG*     1.3    73.4    -      -       -      +
    223C  THR*     1.3    59.8    +      -       -      +
    224C  THR*     4.6     1.4    +      -       -      -
    230C  VAL*     3.5    34.0    -      -       +      +
    231C  VAL      3.4     8.1    -      -       -      +
    232C  PRO*     3.0    27.7    +      -       +      +
    280C  ASP*     2.7    23.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 223 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    221C  ARG*     3.3    22.5    +      -       +      +
    222C  LYS*     1.3    74.6    -      -       -      +
    224C  THR*     1.3    76.5    +      -       -      +
    229C  GLU      4.1     0.3    -      -       -      +
    230C  VAL*     3.2    15.1    -      -       -      +
    231C  VAL*     3.3    15.3    +      -       +      +
    234C  HIS*     3.3    41.3    -      -       +      +
    236C  VAL*     5.8     0.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 224 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    222C  LYS      4.6     1.0    +      -       -      -
    223C  THR*     1.3    89.8    +      -       -      +
    225C  SER*     1.3    76.4    +      -       -      +
    226C  PRO*     4.6     0.5    -      -       -      +
    228C  GLY*     3.1    30.1    -      -       -      +
    229C  GLU      3.3     5.4    -      -       -      +
    230C  VAL*     3.2    18.0    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il