Contacts of the helix formed by residues 1205 - 1255 (chain B) in PDB entry 6CSU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY1205 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1206B ALA* 1.3 65.7 + - - -
1207B LEU 3.2 2.4 + - - +
1208B GLU* 3.9 18.2 - - - +
1209B GLU* 3.0 38.5 + - - +
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Residues in contact with ALA1206 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1205B GLY* 1.3 72.4 - - - +
1207B LEU* 1.3 62.2 + - + +
1209B GLU* 3.8 7.7 + - - +
1210B LEU* 2.9 31.1 + - - +
1207D LEU* 6.6 0.2 - - + -
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Residues in contact with LEU1207 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1205B GLY 3.2 1.2 - - - +
1206B ALA* 1.3 82.8 - - + +
1208B GLU* 1.3 58.4 + - - +
1210B LEU* 3.4 5.2 + - + +
1211B ARG* 2.9 28.6 + - - +
534C VAL* 3.8 25.3 - - + +
537C PHE* 3.9 20.0 - - + +
538C THR* 4.6 12.8 - - - +
1206D ALA* 3.9 26.9 - - + -
1207D LEU* 3.6 30.1 - - + -
1210D LEU* 3.9 11.7 - - + +
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Residues in contact with GLU1208 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1205B GLY 3.3 20.7 + - - +
1207B LEU* 1.3 77.6 - - - +
1209B GLU* 1.3 59.2 + - + +
1211B ARG* 3.0 43.1 + - - +
1212B GLY* 2.9 27.2 + - - -
531C GLU* 5.6 1.7 - - - +
534C VAL* 3.8 21.3 - - + +
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Residues in contact with GLU1209 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1205B GLY* 3.0 29.6 + - - +
1206B ALA* 3.8 6.2 + - - +
1208B GLU* 1.3 75.1 - - + +
1210B LEU* 1.3 64.9 + - - +
1212B GLY* 3.0 3.7 + - - -
1213B GLN* 3.0 32.5 + - - +
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Residues in contact with LEU1210 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1206B ALA 2.9 18.5 + - - +
1207B LEU* 3.7 5.6 - - + +
1209B GLU* 1.3 76.1 - - - +
1211B ARG* 1.3 60.8 + - - +
1213B GLN* 3.4 18.9 + - + +
1214B TYR* 3.2 55.4 + - + +
1207D LEU* 4.2 30.1 - - + +
1210D LEU* 3.7 22.9 - - + -
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Residues in contact with ARG1211 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1207B LEU 2.9 14.9 + - - +
1208B GLU* 3.0 39.8 + - - +
1210B LEU* 1.3 73.5 - - - +
1212B GLY* 1.3 67.0 + - - +
1213B GLN 3.2 0.2 + - - -
1214B TYR* 3.3 7.7 + - - +
1215B ILE* 3.0 49.0 + - + +
527C LYS* 3.2 29.1 + - - +
530C SER* 2.8 37.8 + - - +
531C GLU* 3.3 30.2 + - - +
534C VAL* 4.0 9.2 - - + -
1210D LEU* 4.4 6.2 - - + +
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Residues in contact with GLY1212 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1208B GLU* 2.9 17.9 + - - -
1209B GLU* 3.0 5.5 + - - -
1211B ARG* 1.3 76.9 - - - +
1213B GLN* 1.3 57.1 + - - +
1215B ILE* 3.7 11.1 - - - +
1216B LYS* 2.9 31.4 + - - +
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Residues in contact with GLN1213 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526A LEU* 5.9 0.4 - - - -
1209B GLU* 3.0 19.9 + - + +
1210B LEU* 3.7 21.7 - - + +
1211B ARG 3.1 0.2 - - - -
1212B GLY* 1.3 75.4 - - - +
1214B TYR* 1.3 64.8 + - + +
1216B LYS* 3.2 35.9 + - + +
1217B ALA* 2.8 27.5 + - - +
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Residues in contact with TYR1214 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526A LEU* 4.3 25.6 - - + -
530A SER* 4.1 10.6 + - - -
1210B LEU* 3.2 38.4 + - + +
1211B ARG* 3.8 7.9 - - - +
1213B GLN* 1.3 80.4 - - + +
1215B ILE* 1.3 63.5 + - + +
1217B ALA* 3.3 2.6 + - - +
1218B VAL* 3.0 31.3 + - - +
526C LEU* 4.4 9.4 - - + -
530C SER* 6.5 1.3 - - - -
1207D LEU 4.7 0.9 + - - -
1210D LEU* 3.4 46.7 - - + -
1211D ARG* 3.7 24.1 - - - +
1214D TYR* 3.8 31.2 - + + -
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Residues in contact with ILE1215 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1211B ARG* 3.0 63.9 + - + +
1212B GLY* 3.7 7.4 - - - +
1214B TYR* 1.3 75.5 - - + +
1216B LYS* 1.3 62.6 + - - +
1217B ALA 3.3 0.2 + - - -
1218B VAL* 3.3 2.9 + - - +
1219B LYS* 3.0 49.8 + - + +
523C ILE* 5.4 3.4 - - + +
526C LEU* 4.3 17.0 - - + -
527C LYS* 4.2 27.4 - - + -
530C SER* 4.4 3.8 - - - +
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Residues in contact with LYS1216 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526A LEU* 5.7 1.8 - - - +
1212B GLY 2.9 14.2 + - - +
1213B GLN* 3.2 47.3 + - + +
1215B ILE* 1.3 77.8 - - - +
1217B ALA* 1.3 69.0 + - - +
1219B LYS* 3.8 9.0 - - - +
1220B LYS* 3.2 53.5 + - + +
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Residues in contact with ALA1217 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526A LEU* 3.7 16.4 - - + -
1213B GLN 2.8 17.0 + - - +
1214B TYR 3.6 4.7 - - - +
1215B ILE 3.2 0.2 - - - -
1216B LYS* 1.3 83.7 - - - +
1218B VAL* 1.3 64.8 + - - +
1220B LYS* 3.3 15.4 + - - +
1221B ILE* 3.2 24.2 + - - +
1214D TYR* 3.7 19.5 - - + +
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Residues in contact with VAL1218 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1214B TYR 3.0 17.3 + - - +
1215B ILE 4.0 2.7 - - - +
1217B ALA* 1.3 73.1 - - - +
1219B LYS* 1.3 61.1 + - - +
1221B ILE* 3.1 10.3 + - + +
1222B LYS* 2.9 25.7 + - - +
523C ILE* 3.9 20.0 - - + +
526C LEU* 3.8 17.7 - - + -
1214D TYR* 3.4 24.9 - - + -
1217D ALA* 4.4 12.6 - - + -
1218D VAL* 3.9 10.8 - - + -
1221D ILE* 3.6 27.3 - - + +
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Residues in contact with LYS1219 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1215B ILE* 3.0 41.4 + - + +
1216B LYS* 3.8 8.3 - - - +
1217B ALA 3.3 0.2 - - - -
1218B VAL* 1.3 76.4 - - - +
1220B LYS* 1.3 56.8 + - - +
1222B LYS* 3.1 16.5 + - + +
1223B CYS* 2.9 33.6 + - - -
523C ILE* 4.6 24.0 - - + -
527C LYS* 4.8 10.1 - - - +
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Residues in contact with LYS1220 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1216B LYS* 3.2 55.6 + - + +
1217B ALA* 3.3 11.4 - - - +
1218B VAL 3.2 0.2 - - - -
1219B LYS* 1.3 73.2 - - - +
1221B ILE* 1.3 65.6 + - + +
1223B CYS* 2.9 21.1 + - - +
1224B ASP* 3.0 20.7 + - - +
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Residues in contact with ILE1221 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519A LEU* 3.7 31.0 - - + -
522A HIS* 4.1 30.1 - - + -
523A ILE* 5.7 1.1 - - + -
1217B ALA 3.2 13.6 + - - +
1218B VAL* 3.1 14.0 + - - +
1220B LYS* 1.3 75.3 - - + +
1222B LYS* 1.3 61.8 + - - +
1224B ASP* 3.3 10.8 + - - +
1225B MET* 3.1 32.1 + - + +
1214D TYR* 4.9 11.2 - - - +
1218D VAL* 4.9 9.2 - - + -
1221D ILE* 3.9 33.4 - - + -
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Residues in contact with LYS1222 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1218B VAL 2.9 11.8 + - - +
1219B LYS* 3.3 15.1 - - + +
1221B ILE* 1.3 77.6 - - - +
1223B CYS* 1.3 60.4 + - - +
1225B MET* 3.2 1.9 + - - +
1226B LEU* 2.8 53.9 + - + +
516C LEU* 4.9 6.3 - - - -
519C LEU* 4.3 22.7 - - + -
520C ASP* 2.9 33.6 + - - +
523C ILE* 4.0 23.3 - - + +
1221D ILE* 5.2 2.4 - - + +
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Residues in contact with CYS1223 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1219B LYS* 2.9 21.8 + - - -
1220B LYS* 2.9 12.3 + - + +
1222B LYS* 1.3 79.7 - - - +
1224B ASP* 1.3 65.2 + - - +
1226B LEU* 3.1 10.7 + - - +
1227B ARG* 2.9 34.0 + - + +
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Residues in contact with ASP1224 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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515A ILE* 4.2 9.0 - - + +
522A HIS* 4.1 22.0 + - - -
1220B LYS* 3.0 19.5 + - - +
1221B ILE* 3.6 13.0 - - - +
1223B CYS* 1.3 76.9 - - - +
1225B MET* 1.3 76.8 + - + +
1227B ARG* 3.5 7.8 + - - +
1228B TYR* 3.1 22.5 + - - +
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Residues in contact with MET1225 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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515A ILE* 3.7 27.8 - - + +
519A LEU* 4.6 21.8 - - + -
1221B ILE* 3.1 21.1 + - + +
1222B LYS 3.7 5.8 - - - +
1224B ASP* 1.3 91.4 - - + +
1226B LEU* 1.3 57.2 + - - +
1228B TYR* 3.4 5.6 + - - +
1229B ILE* 2.9 36.3 + - + +
519C LEU* 3.8 26.2 - - + -
1221D ILE* 4.3 7.0 - - + -
1225D MET* 3.5 42.8 - - + -
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Residues in contact with LEU1226 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1222B LYS* 2.8 47.9 + - + +
1223B CYS* 3.4 10.3 - - - +
1225B MET* 1.3 74.9 - - - +
1227B ARG* 1.3 67.9 + - + +
1229B ILE* 2.9 12.0 + - + +
1230B GLN* 2.8 25.2 + - - +
516C LEU* 3.6 32.5 - - + -
519C LEU* 5.2 5.8 - - + -
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Residues in contact with ARG1227 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1223B CYS* 2.9 29.5 + - + +
1224B ASP* 3.9 6.3 - - - +
1226B LEU* 1.3 71.1 - - + +
1228B TYR* 1.3 61.9 + - - +
1230B GLN* 3.5 14.9 + - - +
1231B GLU* 3.0 23.2 + - - +
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Residues in contact with TYR1228 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508A GLU* 3.9 3.9 + - - -
511A ARG* 3.3 68.5 + - + -
512A SER* 3.4 24.2 - - - -
514A HIS* 6.0 0.7 - - - -
515A ILE* 4.0 29.8 - - + -
1224B ASP 3.1 14.5 + - - +
1225B MET* 3.4 9.2 - - - +
1226B LEU 3.1 0.2 - - - -
1227B ARG* 1.3 75.5 - - - +
1229B ILE* 1.3 61.1 + - + +
1231B GLU* 2.9 12.3 + - - +
1232B SER* 2.8 26.8 + - - -
1225D MET* 4.1 20.9 - - + -
1228D TYR* 3.8 21.8 - + - -
1229D ILE* 4.0 5.9 - - + +
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Residues in contact with ILE1229 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1225B MET* 2.9 28.8 + - + +
1226B LEU* 2.9 13.9 + - + +
1228B TYR* 1.3 78.5 - - + +
1230B GLN* 1.3 64.3 + - - +
1232B SER* 3.1 18.5 + - - -
1233B LYS* 3.1 19.5 + - - +
512C SER* 3.5 35.2 - - - +
515C ILE* 3.6 31.4 - - + -
516C LEU* 5.3 5.2 - - + +
519C LEU* 5.7 2.2 - - + -
1225D MET* 4.8 4.0 - - + -
1228D TYR* 3.8 23.3 - - + +
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Residues in contact with GLN1230 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1226B LEU 2.8 15.6 + - - +
1227B ARG* 3.7 15.5 - - - +
1229B ILE* 1.3 77.7 - - - +
1231B GLU* 1.3 61.8 + - - +
1233B LYS* 3.2 29.9 + - - +
1234B GLU* 3.1 54.9 + - - +
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Residues in contact with GLU1231 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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511A ARG* 3.2 31.6 + - - +
1227B ARG 3.0 13.1 + - - +
1228B TYR* 2.9 15.9 + - - +
1230B GLN* 1.3 74.2 - - - +
1232B SER* 1.3 65.5 + - - +
1234B GLU* 3.4 14.2 + - + +
1235B ARG* 3.0 44.1 + - + +
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Residues in contact with SER1232 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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504A PHE* 5.2 0.9 - - - -
508A GLU* 4.1 3.9 + - - -
511A ARG* 2.1 37.7 + - - +
1228B TYR* 2.8 12.6 + - - -
1229B ILE 3.1 11.0 + - - -
1231B GLU* 1.3 75.9 - - - +
1233B LYS* 1.3 62.7 + - - +
1235B ARG* 3.1 8.0 + - - +
1236B ALA* 2.9 24.1 + - - +
508C GLU* 3.8 15.6 - - - -
1228D TYR* 3.3 24.1 + - - -
1232D SER* 5.4 0.2 + - - -
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Residues in contact with LYS1233 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1229B ILE* 3.1 20.1 + - - +
1230B GLN* 3.2 31.1 + - - +
1232B SER* 1.3 77.5 - - - +
1234B GLU* 1.3 58.9 + - + +
1236B ALA* 3.4 1.3 + - - -
1237B ALA* 2.8 30.9 + - - +
505C LEU* 3.4 15.2 - - + +
508C GLU* 5.1 9.4 - - + +
509C GLU* 3.2 32.7 + - - +
512C SER* 3.7 33.4 - - - +
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Residues in contact with GLU1234 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1230B GLN* 3.1 46.0 + - - +
1231B GLU* 3.8 15.2 - - + +
1233B LYS* 1.3 76.4 - - + +
1235B ARG* 1.3 52.1 + - + +
1237B ALA* 3.2 6.6 + - - +
1238B GLU* 2.7 36.0 + - - +
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Residues in contact with ARG1235 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503A ARG* 5.1 2.2 + - - +
504A PHE* 3.0 58.8 + - + -
507A GLU* 3.7 18.4 + - - +
508A GLU* 3.3 21.8 - - - +
511A ARG* 3.0 39.9 - - - +
1231B GLU* 3.0 42.0 + - + +
1232B SER* 3.5 4.4 + - - +
1234B GLU* 1.3 77.0 - - + +
1236B ALA* 1.3 56.7 + - - +
1238B GLU* 3.1 8.4 + - - +
1239B MET* 2.9 30.5 + - - +
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Residues in contact with ALA1236 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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504A PHE* 4.0 10.6 - - + -
1232B SER 2.9 14.5 + - - +
1235B ARG* 1.3 75.7 - - - +
1237B ALA* 1.3 61.2 + - - +
1239B MET* 3.3 18.5 - - - +
1240B VAL* 3.4 11.4 + - - +
501C ASN 4.8 2.3 - - - +
504C PHE* 3.6 33.4 - - + -
505C LEU* 3.6 22.1 - - + +
508C GLU* 4.2 8.3 - - + -
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Residues in contact with ALA1237 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1233B LYS 2.8 20.2 + - - +
1234B GLU* 3.5 7.4 - - - +
1236B ALA* 1.3 75.0 - - - +
1238B GLU* 1.3 65.0 + - - +
1240B VAL* 3.0 20.7 + - - +
1241B LYS* 3.5 5.5 + - - +
505C LEU* 3.5 21.0 - - + +
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Residues in contact with GLU1238 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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503A ARG* 5.7 10.1 - - - +
1234B GLU 2.7 19.7 + - - +
1235B ARG* 3.1 10.3 + - - +
1237B ALA* 1.3 69.7 - - - +
1239B MET* 1.3 66.1 + - - +
1241B LYS* 3.3 29.6 + - - +
1242B ALA* 3.0 28.6 + - + +
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Residues in contact with MET1239 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500A LEU* 4.3 25.6 - - + +
501A ASN* 3.4 28.5 - - - +
503A ARG* 3.9 12.8 - - - +
504A PHE* 3.4 51.4 - - + -
1235B ARG 2.9 7.3 + - - +
1236B ALA* 3.3 12.3 - - - +
1237B ALA 3.2 0.2 - - - -
1238B GLU* 1.3 77.8 - - - +
1240B VAL* 1.3 61.9 + - - +
1242B ALA* 3.0 9.9 + - - +
1243B GLU* 2.9 25.3 + - + +
501C ASN* 3.7 22.2 - - + +
504C PHE* 6.0 3.4 - - + -
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Residues in contact with VAL1240 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1236B ALA 3.4 11.9 + - - +
1237B ALA* 3.0 14.8 + - - +
1239B MET* 1.3 78.2 - - - +
1241B LYS* 1.3 64.3 + - - +
1243B GLU* 3.3 3.6 + - - +
1244B VAL* 3.1 35.2 + - + +
498C ALA 5.1 1.9 + - - +
501C ASN* 3.9 13.9 - - + +
502C THR* 3.9 42.0 - - + +
505C LEU* 4.8 8.5 - - + -
----------------------------------------------------------
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Residues in contact with LYS1241 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1237B ALA 3.5 5.5 + - - +
1238B GLU* 3.3 31.2 + - - +
1240B VAL* 1.3 81.0 - - - +
1242B ALA* 1.3 63.7 + - - +
1244B VAL* 3.2 8.2 + - + +
1245B LEU* 3.0 51.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA1242 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500A LEU* 3.7 32.1 - - + +
1238B GLU* 3.0 20.8 + - + +
1239B MET* 3.0 18.0 + - - +
1241B LYS* 1.3 78.5 - - - +
1243B GLU* 1.3 59.4 + - - +
1245B LEU* 3.4 10.2 + - - +
1246B ARG* 3.3 16.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU1243 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500A LEU* 4.1 8.2 - - + +
501A ASN* 6.4 0.2 - - - +
1239B MET* 2.9 14.3 + - + +
1240B VAL 3.8 3.6 - - - +
1242B ALA* 1.3 73.9 - - - +
1244B VAL* 1.3 67.3 + - - +
1246B ARG* 2.9 41.0 + - + +
1247B GLU* 3.2 20.6 + - - +
498C ALA* 2.1 46.5 + - - +
501C ASN* 3.2 28.1 - - - +
1243D GLU* 5.8 3.4 - - - +
1246D ARG* 3.6 22.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL1244 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1240B VAL* 3.1 25.8 + - + +
1241B LYS* 3.2 11.2 + - + +
1243B GLU* 1.3 75.6 - - - +
1245B LEU* 1.3 68.3 + - + +
1247B GLU* 3.2 33.7 + - + +
1248B ARG* 3.4 5.9 + - - +
498C ALA* 4.9 5.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU1245 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1241B LYS* 3.0 49.1 + - + +
1242B ALA* 3.7 9.2 - - - +
1243B GLU 3.1 0.6 - - - -
1244B VAL* 1.3 85.9 - - + +
1246B ARG* 1.3 57.0 + - - +
1248B ARG* 3.1 50.4 - - - +
1249B GLN* 3.8 2.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG1246 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500A LEU* 4.4 13.2 - - + -
1242B ALA 3.3 7.7 + - - +
1243B GLU* 2.9 41.0 + - + +
1245B LEU* 1.3 73.4 - - - +
1247B GLU* 1.3 78.5 + - - +
1248B ARG 3.0 1.3 - - - -
1249B GLN* 3.2 35.5 + - + +
1250B GLU* 3.6 31.1 + - - +
1243D GLU* 5.2 7.3 + - - +
1246D ARG* 4.5 20.7 - - - +
1250D GLU* 5.4 1.4 + - - -
----------------------------------------------------------
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Residues in contact with GLU1247 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1243B GLU* 3.2 19.5 + - - +
1244B VAL* 3.2 22.3 + - + +
1246B ARG* 1.3 95.1 - - - +
1248B ARG* 1.3 62.2 + - - +
1250B GLU* 3.1 6.8 + - + +
1251B THR* 3.0 24.8 + - - +
498C ALA* 3.6 33.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG1248 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1244B VAL 3.4 5.3 + - - +
1245B LEU* 3.1 42.1 + - - +
1246B ARG 3.0 0.8 - - - -
1247B GLU* 1.3 79.6 - - - +
1249B GLN* 1.3 61.1 + - - +
1251B THR* 3.1 25.6 - - + +
1252B ALA* 3.1 12.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN1249 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1245B LEU 3.8 1.6 + - - +
1246B ARG* 3.2 24.1 + - + +
1247B GLU 3.2 0.6 - - - -
1248B ARG* 1.3 81.1 - - - +
1250B GLU* 1.3 92.7 + - - +
1252B ALA* 3.6 7.5 + - - +
1253B ARG* 3.3 20.7 + - - +
1250D GLU* 5.2 5.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU1250 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1246B ARG* 3.6 27.6 + - - +
1247B GLU* 3.1 9.4 + - + +
1249B GLN* 1.3 102.5 + - - +
1251B THR* 1.3 61.2 + - - +
1253B ARG* 3.2 41.6 + - - +
1254B LYS* 3.1 29.3 + - - +
1250D GLU* 2.8 28.0 - - - +
----------------------------------------------------------
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Residues in contact with THR1251 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1247B GLU 3.0 14.2 + - - +
1248B ARG* 3.1 26.0 - - + +
1250B GLU* 1.3 74.2 - - - +
1252B ALA* 1.3 65.2 + - - +
1253B ARG 3.2 0.2 - - - -
1254B LYS* 3.4 11.6 + - - +
1255B MET* 3.3 40.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA1252 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1248B ARG* 3.1 14.0 + - + +
1249B GLN* 3.7 10.5 - - - +
1251B THR* 1.3 76.2 - - + +
1253B ARG* 1.3 66.1 + - - +
1255B MET* 3.3 28.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG1253 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1249B GLN* 3.3 16.1 + - - +
1250B GLU* 3.2 39.2 + - - +
1252B ALA* 1.3 79.9 - - - +
1254B LYS* 1.3 86.2 + - - +
1255B MET 3.2 7.8 + - - +
1250D GLU* 5.9 0.7 - - - -
1253D ARG* 3.9 41.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS1254 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1250B GLU* 3.1 15.7 + - - +
1251B THR* 3.4 11.2 + - - +
1252B ALA 3.3 0.2 - - - -
1253B ARG* 1.3 102.9 - - - +
1255B MET* 1.3 62.7 + - + +
----------------------------------------------------------
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Residues in contact with MET1255 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1251B THR* 3.3 37.8 + - + +
1252B ALA* 3.7 18.9 - - - +
1253B ARG 3.2 9.6 + - - +
1254B LYS* 1.3 82.0 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il