Contacts of the helix formed by residues 567 - 605 (chain A) in PDB entry 6DMY
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 567 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A LEU 3.8 4.7 - - - +
129A TRP* 3.2 44.6 - - + +
131A GLU* 3.8 22.7 - - + +
565A ILE* 5.6 1.1 - - + -
566A PRO* 1.3 87.0 - - + +
568A PRO* 1.3 63.1 - - - +
569A ALA 3.1 2.7 - - - +
570A LEU* 2.8 37.5 + - + +
571A ARG 3.4 1.0 + - - -
1020A GLN* 3.7 33.9 - - + +
1080A ALA* 3.2 31.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 568 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A GLU* 5.2 4.1 - - - +
127A GLU* 5.7 3.8 - - + +
128A LEU* 3.2 30.5 - - + +
130A VAL* 5.4 0.9 - - + -
131A GLU 4.1 11.9 - - - +
132A VAL* 3.9 24.5 - - + -
496A ASN* 4.5 1.3 + - - -
566A PRO 3.8 0.4 - - - -
567A ILE* 1.3 82.1 - - - +
569A ALA* 1.3 59.5 + - - +
570A LEU 3.2 0.4 - - - -
571A ARG* 3.8 22.9 - - + +
572A ALA* 2.9 31.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 569 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A LEU* 3.6 29.8 + - + +
129A TRP* 4.9 11.7 - - + -
496A ASN* 3.7 22.5 - - + +
498A ALA* 6.0 3.9 - - + +
567A ILE 2.9 1.4 + - - +
568A PRO* 1.3 78.1 - - - +
570A LEU* 1.3 66.3 + - + +
573A PHE* 2.9 29.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 570 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A TRP* 4.4 5.8 - - + -
498A ALA* 6.1 4.3 - - + -
562A ALA 5.6 0.2 - - - -
565A ILE* 4.1 13.7 - - + -
567A ILE* 2.8 27.1 + - + +
569A ALA* 1.3 82.0 - - + +
571A ARG* 1.3 58.2 + - - +
573A PHE* 3.6 10.5 - - + +
574A SER* 2.8 32.1 + - - -
1080A ALA* 2.3 53.6 - - + +
1081A VAL* 4.4 16.4 - - + -
1084A VAL* 3.9 25.1 - - + +
1147A PHE* 6.1 1.1 - - + -
1152A PHE* 5.5 6.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 571 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A VAL* 5.0 12.7 + - - +
563A ALA* 3.4 20.6 + - - +
564A LEU 3.4 10.7 + - - -
565A ILE* 2.7 40.0 + - - +
566A PRO* 3.6 13.5 + - - +
567A ILE 3.4 3.2 + - - -
568A PRO* 3.9 21.2 - - + +
570A LEU* 1.3 77.3 - - - +
572A ALA* 1.3 57.2 + - - +
574A SER* 3.4 5.1 + - - -
575A LEU* 3.0 52.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 572 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A GLU* 4.9 0.9 - - - +
493A ILE* 3.7 35.7 - - + +
494A SER 4.9 0.4 - - - +
496A ASN* 3.3 19.5 - - - +
568A PRO* 2.9 21.1 + - + +
571A ARG* 1.3 74.8 - - - +
573A PHE* 1.3 59.6 + - - +
575A LEU* 4.4 6.7 - - - +
576A GLN* 3.2 31.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 573 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498A ALA* 4.1 19.3 - - + -
499A THR* 3.6 28.9 - - + +
502A VAL* 3.9 20.0 - - + -
503A LEU* 3.9 35.8 - - + +
506A LEU* 5.1 8.7 - - + -
559A PHE* 6.4 2.0 - + - -
569A ALA 2.9 21.3 + - - +
570A LEU* 3.6 14.8 - - + +
571A ARG 3.2 0.4 - - - -
572A ALA* 1.3 77.4 - - - +
574A SER* 1.3 67.9 + - - +
576A GLN* 3.1 8.8 + - - +
577A ALA* 3.0 27.2 + - + +
1084A VAL* 4.5 19.7 - - + -
1085A ILE* 5.0 5.8 - - + -
1152A PHE* 4.6 13.5 - + - -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 574 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559A PHE* 3.8 24.6 - - - +
562A ALA* 4.1 10.7 - - - -
563A ALA* 3.3 25.9 + - - +
570A LEU 2.8 19.0 + - - -
571A ARG 3.4 0.7 + - - -
573A PHE* 1.3 83.4 - - - +
575A LEU* 1.3 61.5 + - - +
577A ALA* 3.8 6.2 - - - -
578A ALA* 2.9 27.0 + - - +
1084A VAL* 4.6 6.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 575 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488A CYS* 5.0 1.1 - - - -
493A ILE* 5.9 10.8 - - + -
560A PHE* 4.2 24.7 - - + -
563A ALA* 3.8 20.4 - - + -
571A ARG* 3.0 36.4 + - + +
572A ALA* 4.8 4.5 - - - +
574A SER* 1.3 75.2 + - - +
576A GLN* 1.3 59.6 + - + +
578A ALA* 3.3 3.7 + - - +
579A VAL* 3.0 34.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 576 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485A LEU* 3.9 19.9 - - + +
488A CYS* 3.9 27.2 - - + +
493A ILE* 4.7 7.7 + - + +
494A SER 3.0 27.7 + - - -
495A PHE* 3.3 24.9 - - - +
496A ASN* 4.6 1.0 + - - -
499A THR* 3.3 28.8 + - - +
503A LEU* 4.8 4.6 - - + +
572A ALA 3.2 17.7 + - - +
573A PHE 3.1 8.1 + - - +
575A LEU* 1.3 75.0 - - + +
577A ALA* 1.3 59.4 + - - +
579A VAL* 3.3 2.3 + - - +
580A VAL* 3.0 34.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 577 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503A LEU* 3.8 25.4 - - + +
506A LEU* 5.1 3.4 - - + -
507A ALA* 5.9 1.5 - - + +
559A PHE* 3.6 27.6 - - + -
573A PHE* 3.0 18.3 + - + +
574A SER* 3.8 10.1 - - - +
575A LEU 3.3 0.4 - - - -
576A GLN* 1.3 75.8 - - - +
578A ALA* 1.3 57.7 + - - +
580A VAL* 3.5 4.4 + - - +
581A VAL* 3.0 33.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 578 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556A VAL* 4.8 6.5 - - + +
559A PHE* 3.6 21.2 - - + -
560A PHE* 3.6 32.3 - - + -
574A SER 2.9 18.3 + - - +
575A LEU* 3.6 5.8 - - - +
576A GLN 3.2 0.2 - - - -
577A ALA* 1.3 74.6 - - - +
579A VAL* 1.3 59.8 + - + +
581A VAL* 3.2 3.3 + - - +
582A VAL* 3.0 34.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 579 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484A GLY* 3.7 17.9 - - - +
487A LEU* 4.5 19.1 - - + -
488A CYS* 3.6 31.9 - - - -
560A PHE* 6.3 1.1 - - + -
575A LEU* 3.0 20.2 + - + +
576A GLN 3.8 0.9 - - - +
578A ALA* 1.3 76.1 - - + +
580A VAL* 1.3 58.2 + - - +
582A VAL* 4.1 3.9 - - - +
583A PHE* 3.0 38.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 580 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480A SER* 4.6 1.5 + - - +
481A VAL* 3.9 41.7 - - + +
484A GLY* 4.1 9.9 - - - -
485A LEU* 4.1 18.2 - - + +
503A LEU* 4.4 5.6 - - + -
507A ALA* 3.8 27.4 - - + -
576A GLN 3.0 17.6 + - - +
577A ALA* 3.9 6.7 - - - +
578A ALA 3.3 0.2 - - - -
579A VAL* 1.3 76.2 - - - +
581A VAL* 1.3 58.4 + - + +
583A PHE* 4.5 4.0 - - - -
584A ASN* 2.7 38.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 581 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
507A ALA* 5.9 5.4 - - + -
510A VAL* 4.9 14.1 - - + -
552A SER* 4.0 9.4 - - - +
555A ASN* 3.9 23.3 - - + +
556A VAL* 3.7 22.0 - - + +
559A PHE* 3.6 20.4 - - + -
577A ALA* 3.0 21.3 + - + +
578A ALA* 3.2 6.9 + - - +
580A VAL* 1.3 76.6 - - + +
582A VAL* 1.3 59.9 + - - +
584A ASN* 3.8 3.6 - - - +
585A PHE* 2.9 28.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 582 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552A SER* 5.0 0.4 - - - -
556A VAL* 3.6 30.5 - - + -
560A PHE* 5.7 3.6 - - + -
578A ALA* 3.0 18.7 + - + +
579A VAL* 4.1 3.8 - - - +
581A VAL* 1.3 74.9 - - - +
583A PHE* 1.3 65.2 + - - +
585A PHE* 3.0 20.8 + - + +
586A ALA* 3.1 16.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 583 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A PHE* 3.5 46.9 - + - -
112A PHE* 3.9 23.3 - + - -
480A SER* 3.2 45.8 - - - -
483A ALA* 3.5 22.9 - - + -
484A GLY* 3.8 11.4 - - - -
487A LEU* 5.9 3.8 - - + -
579A VAL* 3.0 24.9 + - + +
580A VAL* 4.2 2.2 - - - +
582A VAL* 1.3 78.5 - - - +
584A ASN* 1.3 55.5 + - - +
586A ALA* 3.6 6.1 + - + +
587A MET* 3.0 28.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 584 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A VAL* 3.8 19.6 + - - +
480A SER* 3.2 24.0 + - - +
481A VAL* 4.8 6.3 - - - +
507A ALA 4.1 7.3 + - - -
511A GLY* 3.7 27.9 - - - -
580A VAL* 2.7 26.3 + - + +
581A VAL* 3.8 5.4 - - - +
583A PHE* 1.3 74.0 - - - +
585A PHE* 1.3 60.6 + - - +
587A MET* 3.9 1.1 - - - +
588A VAL* 2.9 41.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 585 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514A ASP* 5.5 5.6 - - - -
548A VAL* 3.8 12.6 - - + -
549A ALA* 3.6 36.1 - - + -
552A SER* 3.3 34.1 - - - +
553A ILE* 6.1 7.2 - - + -
581A VAL 2.9 9.1 + - - +
582A VAL* 3.3 15.5 - - + +
584A ASN* 1.3 77.2 - - - +
586A ALA* 1.3 70.5 + - + +
588A VAL* 3.3 4.4 + - - +
589A LEU* 3.0 51.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 586 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A PHE* 5.5 6.7 - - + -
582A VAL* 3.1 12.3 + - + +
583A PHE* 4.1 6.1 - - + +
585A PHE* 1.3 88.7 - - + +
587A MET* 1.3 57.9 + - - +
589A LEU* 5.2 0.7 - - - -
590A LEU* 3.0 52.3 + - + +
591A ILE* 4.7 1.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 587 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A LEU* 5.6 6.3 - - + -
109A PHE* 3.5 43.7 - - + -
476A LEU* 3.4 57.6 - - + +
477A VAL* 4.5 1.1 - - - -
479A LEU* 4.7 10.3 - - + -
480A SER* 3.7 20.2 - - - +
583A PHE* 3.0 21.4 + - + +
584A ASN* 3.5 7.0 - - - +
586A ALA* 1.3 76.8 - - - +
588A VAL* 1.3 57.5 + - - +
591A ILE* 3.0 43.5 + - + +
592A PHE 3.6 1.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 588 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476A LEU* 4.8 3.8 - - + -
477A VAL* 4.1 9.2 - - + -
511A GLY 4.7 6.1 - - - +
514A ASP* 4.3 18.2 - - + +
515A VAL* 3.8 34.5 - - + +
518A LEU* 4.3 18.3 - - + +
548A VAL* 5.2 2.9 - - + -
584A ASN* 2.9 34.9 + - - +
585A PHE* 3.9 4.3 - - - +
587A MET* 1.3 74.2 - - + +
589A LEU* 1.3 63.2 + - + +
592A PHE* 2.9 38.9 + - + +
593A PRO* 3.3 2.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 589 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A LEU* 4.7 10.8 - - + -
90A LEU* 4.7 12.8 - - + -
94A ILE* 6.0 0.9 - - - +
518A LEU* 4.9 5.8 - - + -
541A LEU* 4.6 16.7 - - + +
545A GLY* 4.3 20.2 - - - +
548A VAL* 4.1 18.6 - - + -
549A ALA* 5.3 1.1 - - + -
585A PHE* 3.0 45.7 + - + +
586A ALA* 5.2 0.4 - - - -
588A VAL* 1.3 80.2 - - - +
590A LEU* 1.3 77.3 + - + +
593A PRO* 3.3 20.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 590 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A LEU* 4.3 23.3 - - + -
94A ILE* 4.6 23.5 - - + +
101A PHE* 5.3 2.9 - - - +
586A ALA* 3.0 32.8 + - + +
589A LEU* 1.3 100.6 - - + +
591A ILE* 1.3 71.7 + - + +
593A PRO* 4.2 3.7 - - - +
594A ALA* 5.0 4.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 591 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A PHE* 3.5 26.9 - - + +
102A LEU* 4.6 21.5 - - + +
105A GLY* 3.8 17.5 - - - -
106A LEU* 5.2 4.3 - - + +
109A PHE* 4.3 21.1 - - + -
476A LEU* 5.0 8.9 - - + +
586A ALA 4.7 0.2 - - - +
587A MET* 3.0 33.8 + - + +
590A LEU* 1.3 90.4 - - + +
592A PHE* 1.3 65.3 + - - +
593A PRO 3.4 1.6 - - - -
594A ALA* 3.1 19.8 + - - +
595A ILE* 3.5 5.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 592 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457A MET* 6.6 0.2 - - - -
469A VAL* 4.2 11.0 - - + -
470A GLY* 5.9 2.2 - - - -
473A GLY* 4.0 12.8 - - - -
476A LEU* 4.0 22.4 - - + +
515A VAL* 3.6 43.5 - - + -
518A LEU* 4.1 26.0 - - + -
519A ALA* 4.6 9.0 - - + -
587A MET 3.6 1.4 + - - -
588A VAL* 2.9 28.7 + - + +
591A ILE* 1.3 78.8 - - - +
593A PRO* 1.3 55.1 - - - +
595A ILE* 3.3 26.0 + - + +
596A LEU* 3.0 47.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 593 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A ILE* 4.0 22.4 - - + +
518A LEU* 5.1 2.7 - - + -
537A THR* 4.2 10.9 - - + +
541A LEU* 3.7 33.7 - - + -
588A VAL 3.3 6.7 - - - +
589A LEU* 3.3 28.3 - - - +
590A LEU 4.2 0.9 - - - -
591A ILE 3.8 2.7 - - - +
592A PHE* 1.3 88.1 - - + +
594A ALA* 1.3 58.8 + - - +
596A LEU* 3.5 18.0 - - + +
597A SER* 2.9 26.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 594 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A ILE* 4.3 10.7 - - + +
97A ASN 5.2 0.4 - - - +
98A CYS* 3.7 22.0 - - - +
101A PHE* 4.8 8.1 - - + -
102A LEU* 4.3 21.5 - - + +
590A LEU 5.0 1.3 + - - +
591A ILE* 3.1 18.8 + - - +
593A PRO* 1.3 77.3 - - - +
595A ILE* 1.3 59.1 + - - +
597A SER* 3.0 8.4 + - - -
598A MET* 2.9 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 595 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102A LEU* 5.2 18.1 - - + +
469A VAL* 3.7 28.2 - - + +
472A ALA* 4.9 13.9 - - + -
476A LEU* 4.8 9.9 - - + -
591A ILE 3.5 4.0 + - - +
592A PHE* 3.3 36.9 + - + +
594A ALA* 1.3 75.2 - - - +
596A LEU* 1.3 59.8 + - - +
598A MET* 4.4 13.7 - - + +
599A ASP* 2.9 30.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 596 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A GLN* 6.3 1.1 - - + -
469A VAL* 4.8 8.5 - - + -
518A LEU* 4.8 9.0 - - + +
519A ALA* 5.6 2.7 - - - -
522A PHE* 4.0 40.0 - - + -
537A THR* 5.0 9.4 + - + +
540A CYS* 4.3 23.8 - - + -
541A LEU* 6.0 2.0 - - + -
592A PHE* 3.0 43.8 + - + +
593A PRO* 3.5 25.1 - - + +
594A ALA 3.2 0.2 - - - -
595A ILE* 1.3 78.1 - - - +
597A SER* 1.3 57.1 + - - +
599A ASP* 3.7 5.0 - - - +
600A LEU* 2.9 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 597 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A ILE 4.8 4.9 - - - -
95A GLN* 2.9 33.1 + - - +
98A CYS* 3.3 24.3 - - - +
537A THR* 4.4 9.4 - - - -
593A PRO 2.9 14.3 + - - -
594A ALA* 3.0 11.8 + - - -
596A LEU* 1.3 76.4 - - - +
598A MET* 1.3 59.0 + - - +
600A LEU* 3.2 4.3 + - - +
601A TYR* 2.9 32.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 598 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98A CYS* 3.7 40.6 - - + +
99A GLY* 4.5 5.4 - - - +
102A LEU* 6.2 2.9 - - + -
594A ALA 2.9 17.3 + - - +
595A ILE* 4.4 15.0 - - + +
597A SER* 1.3 72.4 - - - +
599A ASP* 1.3 60.9 + - - +
601A TYR* 4.0 11.6 - - + +
602A ARG* 3.0 58.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 599 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A GLN* 4.7 15.1 + - - +
469A VAL* 3.0 32.5 - - + +
522A PHE* 3.9 20.4 - - - -
595A ILE* 2.9 22.9 + - - +
596A LEU* 3.7 7.9 - - + +
597A SER 3.3 0.2 - - - -
598A MET* 1.3 78.1 - - - +
600A LEU* 1.3 57.9 + - - +
602A ARG* 4.8 2.7 - - - -
603A ARG* 2.9 50.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 600 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A GLN* 5.6 6.5 - - - +
522A PHE* 3.6 31.2 - - + -
526A GLY 5.0 7.2 - - - +
527A GLN* 6.1 0.2 - - + -
532A PRO* 5.6 2.7 - - + -
533A PHE* 3.5 35.3 - - + +
536A ARG* 4.9 14.6 - - + +
537A THR* 5.7 2.9 - - - +
596A LEU 2.9 17.9 + - - +
597A SER* 3.9 4.5 - - - +
598A MET 3.2 0.2 - - - -
599A ASP* 1.3 77.0 - - - +
601A TYR* 1.3 63.3 + - + +
603A ARG 5.4 0.4 - - - -
604A GLU* 2.7 61.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 601 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A GLN* 3.8 31.7 + - - +
96A LYS* 5.2 10.0 + - - +
98A CYS* 3.9 30.3 - - + -
533A PHE* 3.9 45.1 + + + -
597A SER 2.9 19.6 + - - +
598A MET* 4.0 13.2 - - - +
600A LEU* 1.3 79.4 - - + +
602A ARG* 1.3 80.3 + - - +
604A GLU 4.3 0.7 + - - -
605A ASP* 4.7 3.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 602 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598A MET* 3.0 43.7 + - + +
599A ASP* 4.2 2.2 - - - +
601A TYR* 1.3 93.9 + - - +
603A ARG* 1.3 66.8 + - + +
604A GLU 3.3 4.7 + - - -
605A ASP* 3.9 3.5 + - - +
607A ARG* 3.0 46.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 603 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462A CYS* 5.8 1.6 - - - +
463A SER* 3.8 37.6 + - - +
465A SER* 3.4 35.1 + - - +
466A GLN* 4.9 5.5 - - - +
467A GLY 6.2 0.2 - - - -
468A ALA* 6.1 5.4 - - - -
469A VAL* 5.7 0.4 - - - -
527A GLN* 4.7 0.3 + - - -
599A ASP* 2.9 39.9 + - - +
600A LEU* 5.1 1.3 - - - -
602A ARG* 1.3 78.7 - - + +
604A GLU* 1.3 62.6 + - - +
606A ARG* 4.1 6.2 + - - +
607A ARG* 3.0 41.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 604 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A SER* 4.4 2.8 + - - -
526A GLY 4.5 2.4 - - - +
527A GLN* 3.7 40.0 + - - +
532A PRO* 5.2 14.1 - - + +
533A PHE* 3.6 28.7 - - + -
600A LEU* 2.7 46.6 + - + +
602A ARG 3.3 0.6 + - - -
603A ARG* 1.3 80.3 - - - +
605A ASP* 1.3 61.1 + - + +
606A ARG 3.1 4.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 605 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A PHE* 4.9 12.7 - - + -
601A TYR 4.7 3.9 + - - +
602A ARG 3.9 4.1 + - - +
604A GLU* 1.3 81.0 - - + +
606A ARG* 1.3 69.4 + - - +
607A ARG 3.6 7.4 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il