Contacts of the helix formed by residues 410 - 447 (chain C) in PDB entry 6E7P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 410 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427B ARG* 3.8 40.3 + - - +
408C PHE* 3.2 4.5 - - + +
409C HIS* 1.3 83.6 + - - +
411C TYR* 1.3 69.3 + - + +
412C ASN 3.2 2.0 - - - -
413C ILE* 3.3 23.0 + - - +
414C LEU* 4.3 6.4 + - - +
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Residues in contact with TYR 411 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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426B MET 5.6 0.2 + - - -
427B ARG* 3.6 51.7 + - + +
430B CYS* 5.2 9.8 - - + +
431B CYS* 4.7 7.7 - - - -
405C LEU* 3.3 62.6 - - + +
406C THR* 5.0 0.7 - - - -
408C PHE* 3.8 24.6 + + + +
410C ASN* 1.3 82.6 - - + +
412C ASN* 1.3 65.2 + - - +
413C ILE 3.2 0.6 + - - -
414C LEU* 3.5 10.1 + - + +
415C ILE* 3.4 25.5 + - + +
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Residues in contact with ASN 412 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405C LEU 4.5 0.8 + - - -
406C THR* 4.1 28.3 + - - +
408C PHE 3.5 17.3 + - - +
409C HIS* 4.4 8.1 - - - +
410C ASN 3.2 0.8 - - - -
411C TYR* 1.3 76.3 - - - +
413C ILE* 1.3 63.0 + - + +
415C ILE* 4.8 2.8 - - - +
416C ALA* 3.0 36.6 + - - +
419C ARG* 5.6 2.8 + - - -
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Residues in contact with ILE 413 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409C HIS 3.7 15.0 - - - +
410C ASN* 3.4 15.9 - - - +
411C TYR 3.2 0.6 - - - -
412C ASN* 1.3 82.5 - - + +
414C LEU* 1.3 58.0 + - + +
416C ALA* 5.1 0.2 - - - -
417C THR* 2.3 36.3 + - - +
521C TYR* 4.8 13.5 - - + +
524C ILE* 3.3 33.9 - - + +
525C LYS* 5.3 8.5 - - + -
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Residues in contact with LEU 414 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424B SER* 4.2 8.1 - - - +
427B ARG* 4.3 12.3 - - + -
428B PHE* 3.7 48.2 - - + +
431B CYS* 5.1 3.4 - - - -
512B LEU* 4.6 10.3 - - + +
516B LEU* 3.9 33.0 - - + -
410C ASN 4.7 10.3 - - - +
411C TYR* 3.5 10.0 + - - +
412C ASN 3.4 0.4 - - - -
413C ILE* 1.3 80.6 - - + +
415C ILE* 1.3 66.5 + - + +
417C THR* 3.4 16.8 - - - +
418C LEU* 3.4 17.0 + - - +
521C TYR* 4.5 10.5 - - + +
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Residues in contact with ILE 415 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B PHE* 5.3 5.2 - - + -
431B CYS* 4.3 25.1 - - + +
435B ILE* 6.5 0.7 - - + -
354C TRP* 5.7 6.3 - - + -
402C ILE* 3.8 30.5 - - + -
405C LEU* 5.8 1.3 - - + -
406C THR* 4.1 24.0 - - + -
411C TYR* 3.4 18.7 + - + +
412C ASN* 4.2 2.5 - - - +
413C ILE 3.4 0.4 - - - -
414C LEU* 1.3 76.9 - - + +
416C ALA* 1.3 61.6 + - - +
418C LEU* 3.0 27.2 + - + +
419C ARG* 3.1 12.2 + - + +
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Residues in contact with ALA 416 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412C ASN* 3.0 28.4 + - - +
415C ILE* 1.3 73.5 - - - +
417C THR* 1.3 60.4 + - - +
419C ARG* 3.6 33.8 - - - +
420C VAL* 3.0 34.6 + - + +
524C ILE* 3.5 14.5 - - + +
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Residues in contact with THR 417 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512B LEU* 4.6 12.8 - - + -
413C ILE 2.3 28.7 + - - -
414C LEU* 3.4 10.9 - - - -
415C ILE 3.1 0.2 - - - -
416C ALA* 1.3 77.4 - - - +
418C LEU* 1.3 63.2 + - - +
420C VAL* 3.4 6.3 - - - +
421C ALA* 3.3 23.0 + - - +
517C ILE* 4.7 9.4 - - + +
520C ALA* 4.5 4.9 - - + +
521C TYR* 4.0 42.2 - - + +
524C ILE* 3.4 17.8 - - + +
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Residues in contact with LEU 418 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B PHE* 4.6 11.2 - - + -
504B LEU* 6.5 0.4 - - + -
508B MET* 3.9 44.0 - - + +
509B VAL* 6.0 2.2 - - + -
512B LEU* 3.7 27.8 - - + -
414C LEU 3.4 14.8 + - - +
415C ILE* 3.0 16.8 + - + +
417C THR* 1.3 79.7 - - - +
419C ARG* 1.3 55.8 + - - +
421C ALA* 4.6 2.2 - - + -
422C LEU* 2.8 40.5 + - + +
517C ILE* 5.3 5.8 - - + -
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Residues in contact with ARG 419 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412C ASN* 5.6 3.2 + - - -
415C ILE* 3.1 13.5 + - + +
416C ALA* 3.8 28.9 + - - +
417C THR 3.3 0.2 - - - -
418C LEU* 1.3 77.4 - - - +
420C VAL* 1.3 68.2 + - + +
422C LEU* 4.3 7.0 - - - +
423C PRO* 3.3 18.5 - - - +
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Residues in contact with VAL 420 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416C ALA* 3.0 19.9 + - + +
417C THR* 3.4 15.7 - - - +
419C ARG* 1.3 86.8 - - + +
421C ALA* 1.3 55.9 + - - +
423C PRO* 4.0 10.0 - - - +
424C SER* 4.6 6.9 + - - -
520C ALA* 4.3 22.3 - - + +
523C THR* 4.7 5.6 - - - +
524C ILE* 5.1 9.9 - - + -
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Residues in contact with ALA 421 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508B MET* 5.7 0.7 - - - -
417C THR* 3.3 16.9 + - + +
418C LEU* 3.2 4.7 + - + +
420C VAL* 1.3 79.4 - - - +
422C LEU* 1.3 60.3 + - - +
423C PRO 3.3 2.2 - - - -
424C SER* 3.1 9.8 + - - +
425C VAL* 3.0 32.3 + - + +
516C LEU* 5.0 2.7 - - + +
517C ILE* 3.7 28.3 - - + -
520C ALA* 3.9 16.8 - - + -
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Residues in contact with LEU 422 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508B MET* 4.9 20.2 - - + -
418C LEU* 2.8 26.0 + - + +
419C ARG* 4.3 6.5 - - - +
421C ALA* 1.3 70.3 - - - +
423C PRO* 1.4 69.7 - - + +
425C VAL* 4.4 5.3 - - - +
426C MET* 3.3 42.3 + - + +
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Residues in contact with PRO 423 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419C ARG 3.3 19.3 - - - +
420C VAL* 4.0 8.7 - - - +
421C ALA 3.6 2.5 - - - -
422C LEU* 1.4 92.2 - - + +
424C SER* 1.3 57.4 + - - +
426C MET* 3.2 4.9 + - + +
427C ARG* 2.9 56.0 + - - +
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Residues in contact with SER 424 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420C VAL 4.6 6.4 + - - -
421C ALA* 3.1 12.2 + - - -
423C PRO* 1.3 78.4 - - - +
425C VAL* 1.3 61.7 + - - +
427C ARG* 3.6 20.8 + - - +
428C PHE* 3.4 21.3 + - - +
516C LEU* 3.7 28.0 - - - +
414D LEU* 4.2 5.5 - - - +
521D TYR* 5.7 0.7 + - - -
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Residues in contact with VAL 425 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
507B TYR* 5.1 4.9 - - + +
508B MET* 4.3 33.4 - - + -
421C ALA 3.0 16.8 + - - +
422C LEU 4.4 2.7 - - - +
424C SER* 1.3 78.2 - - - +
426C MET* 1.3 55.6 + - + +
428C PHE* 3.1 2.9 + - - +
429C CYS* 2.7 37.3 + - + +
513C PHE* 3.9 26.4 - - + +
516C LEU* 4.6 15.9 - - + -
517C ILE* 4.3 22.7 - - + -
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Residues in contact with MET 426 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508B MET* 5.7 9.2 - - + -
422C LEU* 3.3 32.8 + - + +
423C PRO* 3.2 4.9 + - + +
425C VAL* 1.3 78.0 - - + +
427C ARG* 1.3 64.5 + - - +
429C CYS* 4.0 16.8 - - - +
430C CYS* 3.8 14.6 + - - +
411D TYR* 5.6 0.3 + - - -
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Residues in contact with ARG 427 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423C PRO* 2.9 56.9 + - - +
424C SER* 3.4 20.2 + - - +
426C MET* 1.3 77.7 - - - +
428C PHE* 1.3 62.6 + - - +
430C CYS* 3.2 19.6 + - - +
431C CYS* 3.5 9.6 + - - -
410D ASN* 3.8 37.1 + - - +
411D TYR* 3.6 39.0 - - + +
414D LEU* 4.4 9.2 - - + -
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Residues in contact with PHE 428 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424C SER 3.4 9.3 + - - +
425C VAL 3.1 4.2 + - - +
427C ARG* 1.3 76.0 - - - +
429C CYS* 1.3 60.7 + - - +
431C CYS* 2.9 31.7 + - + +
432C VAL* 3.1 34.7 + - + +
509C VAL* 4.0 22.2 - - + -
512C LEU* 3.7 38.1 - - + -
513C PHE* 3.4 28.0 - + + -
516C LEU* 4.6 5.6 - - + -
414D LEU* 3.7 37.7 - - + +
415D ILE* 5.3 4.9 - - + -
418D LEU* 4.7 11.7 - - + -
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Residues in contact with CYS 429 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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503B SER* 5.8 3.8 - - - -
425C VAL* 2.7 23.1 + - + +
426C MET* 4.2 22.2 - - - +
427C ARG 3.3 0.2 - - - -
428C PHE* 1.3 72.9 - - - +
430C CYS* 1.3 59.8 + - - +
432C VAL* 4.2 6.4 - - - +
433C ALA* 3.2 25.5 + - - +
513C PHE* 4.8 13.2 - - + -
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Residues in contact with CYS 430 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426C MET 3.8 8.7 + - - +
427C ARG* 3.2 11.5 + - - +
428C PHE 3.1 0.4 - - - -
429C CYS* 1.3 78.0 - - - +
431C CYS* 1.3 62.7 + - - +
432C VAL 3.2 1.0 + - - -
433C ALA* 4.2 5.0 - - - +
434C VAL* 3.3 29.7 + - - +
405D LEU* 4.6 16.1 - - + +
411D TYR* 5.2 9.0 - - - +
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Residues in contact with CYS 431 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427C ARG 3.9 11.7 - - - -
428C PHE* 2.9 30.7 + - + +
430C CYS* 1.3 79.1 - - - +
432C VAL* 1.3 62.0 + - - +
434C VAL* 4.2 4.6 + - - +
435C ILE* 3.7 22.9 + - - +
402D ILE* 4.8 7.0 - - + +
405D LEU* 3.7 26.0 - - - -
411D TYR* 4.7 13.9 - - - -
414D LEU* 5.2 3.8 - - - -
415D ILE* 4.4 27.6 - - + -
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Residues in contact with VAL 432 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428C PHE* 3.1 47.0 + - + +
429C CYS* 3.6 6.3 + - - +
430C CYS 3.2 0.2 - - - -
431C CYS* 1.3 78.5 - - - +
433C ALA* 1.3 52.8 + - - +
434C VAL 3.1 2.0 - - - -
435C ILE* 3.0 11.1 + - + +
436C TYR* 2.7 34.3 + - + +
505C PHE* 3.7 32.8 - - + -
509C VAL* 3.8 17.0 - - + -
513C PHE* 5.1 4.3 - - + -
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Residues in contact with ALA 433 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429C CYS* 3.2 19.2 + - - +
430C CYS* 3.7 6.9 + - - +
432C VAL* 1.3 79.2 - - - +
434C VAL* 1.3 57.7 + - + +
436C TYR* 3.8 12.5 - - + +
437C LEU* 3.0 39.4 + - + +
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Residues in contact with VAL 434 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430C CYS* 3.3 25.3 + - - +
431C CYS* 4.3 7.2 - - - +
432C VAL 3.1 0.4 - - - -
433C ALA* 1.3 79.4 - - + +
435C ILE* 1.3 62.1 + - + +
437C LEU* 3.5 6.3 + - - +
438C GLY* 3.3 14.7 + - - -
398D TRP* 3.3 45.1 - - + +
399D VAL* 5.0 0.2 - - - -
401D VAL* 3.9 24.5 - - + -
402D ILE* 4.5 13.0 - - + -
405D LEU* 5.2 7.2 - - + -
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Residues in contact with ILE 435 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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431C CYS 3.7 16.4 - - - +
432C VAL* 3.0 9.7 + - + +
434C VAL* 1.3 74.4 - - + +
436C TYR* 1.3 60.8 + - - +
438C GLY* 3.0 16.5 + - - +
439C TYR* 3.3 35.2 + - + +
504C LEU* 4.8 14.1 - - + -
505C PHE* 4.9 10.5 - - + -
395D LEU* 5.1 0.6 - - + +
399D VAL* 4.4 21.8 - - + -
402D ILE* 3.7 30.1 - - + -
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Residues in contact with TYR 436 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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499B TYR* 5.5 0.2 - - - -
432C VAL* 2.7 23.2 + - + +
433C ALA* 3.8 12.1 - - + +
434C VAL 3.3 0.2 - - - -
435C ILE* 1.3 74.4 - - - +
437C LEU* 1.3 70.2 + - + +
439C TYR* 3.6 5.1 + - - +
440C CYS* 3.2 38.9 + - - -
461C SER* 2.8 43.3 + - - -
464C LEU* 4.2 19.0 - - + +
465C PHE* 3.4 26.4 + + + +
468C ILE* 5.9 1.8 - - + -
501C PHE* 4.3 8.3 - + - -
505C PHE* 3.9 28.6 - + + -
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Residues in contact with LEU 437 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
433C ALA* 3.0 25.1 + - + +
434C VAL* 4.0 5.8 - - - +
436C TYR* 1.3 85.8 - - + +
438C GLY* 1.3 62.9 - - - +
440C CYS* 3.8 12.0 - - + +
441C PHE* 3.1 45.5 + - + -
398D TRP* 4.9 23.3 - - + -
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Residues in contact with GLY 438 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434C VAL 3.3 9.5 + - - -
435C ILE* 3.0 11.4 + - - -
437C LEU* 1.3 79.0 - - - +
439C TYR* 1.3 61.2 + - - +
441C PHE* 3.4 2.9 + - - +
442C CYS* 3.1 23.9 + - - +
394D THR 4.7 1.5 - - - +
395D LEU* 3.6 22.0 + - - +
398D TRP* 4.4 17.5 - - - -
399D VAL* 6.1 0.7 - - - -
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Residues in contact with TYR 439 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435C ILE* 3.3 35.8 + - + -
436C TYR 3.6 4.5 + - - +
438C GLY* 1.3 73.1 - - - +
440C CYS* 1.3 59.8 + - - +
441C PHE 3.3 0.2 - - - -
442C CYS* 4.4 1.6 - - - -
443C GLY* 2.9 14.7 + - - -
464C LEU* 4.2 5.5 - - + +
497C TYR* 2.3 52.5 + + + +
500C SER* 4.1 24.4 + - - -
501C PHE* 3.7 46.9 - + + -
504C LEU* 4.3 12.4 - - + +
505C PHE* 5.5 0.9 - + - -
395D LEU* 3.8 30.5 - - + +
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Residues in contact with CYS 440 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
436C TYR* 3.2 47.0 + - - +
437C LEU* 3.9 14.6 - - + +
438C GLY 3.3 0.8 - - - -
439C TYR* 1.3 77.7 - - - +
441C PHE* 1.3 64.0 + - + +
444C TRP* 3.3 23.6 + - - +
457C LEU* 5.1 11.6 - - + +
460C VAL* 3.9 15.3 - - + +
461C SER* 4.3 15.5 - - - +
464C LEU* 3.8 17.7 - - - -
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Residues in contact with PHE 441 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437C LEU* 3.1 43.3 + - + +
438C GLY 4.1 2.2 - - - +
440C CYS* 1.3 78.5 - - + +
442C CYS* 1.3 64.8 + - - +
444C TRP* 3.7 7.6 + + - +
445C ILE* 3.3 26.3 - - - +
457C LEU* 3.7 30.5 - - + -
77D THR* 4.3 15.9 - - + -
80D LEU* 3.7 28.7 - - + +
81D ILE* 3.9 22.9 - - + -
394D THR* 4.2 12.8 - - + -
398D TRP* 4.4 23.8 - + - -
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Residues in contact with CYS 442 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438C GLY 3.1 18.2 + - - +
439C TYR* 4.1 2.5 - - - +
440C CYS 3.4 0.2 - - - -
441C PHE* 1.3 79.1 - - - +
443C GLY* 1.3 61.4 + - - +
444C TRP 3.4 0.5 + - - -
445C ILE* 3.6 1.4 + - - +
446C VAL* 3.4 24.4 + - - +
493C PHE* 4.0 24.0 - - - -
497C TYR* 4.2 8.1 - - + -
391D GLY* 3.6 38.3 - - - +
392D THR 4.0 0.7 - - - -
395D LEU* 3.8 25.5 - - + +
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Residues in contact with GLY 443 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439C TYR 2.9 12.0 + - - -
440C CYS 4.4 0.2 - - - -
442C CYS* 1.3 78.0 - - - +
444C TRP* 1.3 61.1 + - - +
445C ILE 3.3 0.4 - - - -
446C VAL* 4.8 0.9 - - - -
447C LEU* 3.3 33.0 + - - +
448C GLY 3.8 1.2 + - - -
454C PHE* 4.3 8.3 - - - +
460C VAL* 5.1 6.7 - - - -
497C TYR* 3.4 27.3 + - - -
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Residues in contact with TRP 444 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440C CYS 3.3 20.0 + - - +
441C PHE* 4.1 6.5 - + - +
442C CYS 3.2 1.0 - - - -
443C GLY* 1.3 77.6 - - - +
445C ILE* 1.3 81.7 + - + +
448C GLY* 3.3 17.4 - - - -
449C PRO* 5.0 0.2 - - - +
454C PHE 3.8 7.6 - - - -
455C ARG 2.5 36.5 + - - -
456C SER* 3.6 13.5 - - - +
457C LEU* 3.5 33.0 - - + -
460C VAL* 4.4 7.2 - - + -
80D LEU* 4.8 3.4 - - + -
81D ILE* 4.3 24.7 - - + -
84D GLY* 4.2 21.5 - - - -
85D LEU* 4.2 23.6 - - + -
88D GLN* 3.8 19.1 + - + +
----------------------------------------------------------
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Residues in contact with ILE 445 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C PHE 3.3 23.8 - - - +
442C CYS 3.6 3.2 + - - +
443C GLY 3.3 0.2 - - - -
444C TRP* 1.3 103.1 - - + +
446C VAL* 1.3 67.0 + - + +
449C PRO* 3.4 18.2 - - - +
80D LEU* 3.6 30.1 - - + +
83D PHE* 4.5 16.2 - - + -
84D GLY* 4.6 15.9 - - - -
87D ASN* 5.5 4.3 + - - +
387D SER* 3.7 38.4 - - - +
390D LEU* 5.6 2.7 - - + -
391D GLY* 5.2 4.9 - - - +
----------------------------------------------------------
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Residues in contact with VAL 446 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442C CYS* 3.4 21.9 + - - +
443C GLY* 5.1 0.2 - - - -
445C ILE* 1.3 80.5 - - + +
447C LEU* 1.3 64.6 + - + +
448C GLY 3.3 0.8 + - - -
449C PRO* 3.8 7.1 - - - +
450C TYR* 4.0 13.7 - - - -
490C VAL* 4.1 19.8 - - + +
493C PHE* 3.5 41.3 - - + -
387D SER* 4.0 26.5 + - - +
388D ILE* 4.1 24.9 - - + +
391D GLY* 5.0 1.6 - - - -
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Residues in contact with LEU 447 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443C GLY* 3.3 16.2 + - - +
446C VAL* 1.3 86.7 - - + +
448C GLY* 1.3 62.8 + - - +
449C PRO 3.7 0.7 - - - -
450C TYR* 4.3 3.4 - - - +
451C HIS* 3.6 27.7 + - + +
454C PHE* 3.5 42.8 - - + +
480C MET* 4.2 12.1 - - - -
490C VAL* 4.2 16.2 - - + +
493C PHE* 5.3 1.1 - - + -
494C SER* 3.8 31.9 - - - -
497C TYR* 4.0 28.9 - - + -
498C LEU* 5.3 2.5 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il