Contacts of the helix formed by residues 410 - 447 (chain D) in PDB entry 6E7P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 410 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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427C ARG* 3.8 38.1 + - - +
408D PHE* 3.2 4.8 - - + +
409D HIS* 1.3 82.2 + - - +
411D TYR* 1.3 70.6 + - + +
412D ASN 3.2 1.8 - - - -
413D ILE* 3.3 23.2 + - - +
414D LEU* 4.3 6.1 + - - +
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Residues in contact with TYR 411 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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427C ARG* 3.6 52.0 + - + +
430C CYS* 5.2 9.4 - - + +
431C CYS* 4.7 8.2 - - - -
405D LEU* 3.3 61.0 - - + +
406D THR* 5.0 0.7 - - - -
408D PHE* 3.8 25.4 + + + +
409D HIS 3.7 0.2 - - - -
410D ASN* 1.3 83.6 - - + +
412D ASN* 1.3 61.7 + - - +
413D ILE 3.2 0.8 + - - -
414D LEU* 3.5 9.9 + - + +
415D ILE* 3.4 26.0 + - - +
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Residues in contact with ASN 412 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405D LEU 4.5 0.6 + - - -
406D THR* 4.1 27.6 + - - +
408D PHE 3.5 17.3 + - - +
409D HIS* 4.4 8.5 - - - +
410D ASN 3.2 0.8 - - - -
411D TYR* 1.3 76.6 - - - +
413D ILE* 1.3 63.4 + - + +
415D ILE* 4.7 3.5 - - - +
416D ALA* 3.0 36.5 + - - +
419D ARG* 5.6 3.6 + - - -
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Residues in contact with ILE 413 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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409D HIS 3.7 15.3 - - - +
410D ASN* 3.4 16.8 - - - +
411D TYR 3.2 0.6 - - - -
412D ASN* 1.3 84.6 - - + +
414D LEU* 1.3 58.1 + - + +
417D THR* 2.3 36.4 + - - +
521D TYR* 4.8 13.7 - - + +
524D ILE* 3.3 34.8 - - + +
525D LYS* 5.3 8.7 - - + -
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Residues in contact with LEU 414 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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424C SER* 4.2 9.2 - - - +
427C ARG* 4.4 11.7 - - + -
428C PHE* 3.7 48.6 - - + +
431C CYS* 5.2 3.6 - - - -
512C LEU* 4.5 11.0 - - + +
516C LEU* 3.9 32.8 - - + -
410D ASN 4.7 9.9 - - - +
411D TYR* 3.5 9.9 + - + +
412D ASN 3.4 0.2 - - - -
413D ILE* 1.3 81.9 - - + +
415D ILE* 1.3 65.1 + - + +
417D THR* 3.4 15.9 - - - -
418D LEU* 3.4 17.0 + - - +
521D TYR* 4.5 10.5 - - + +
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Residues in contact with ILE 415 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428C PHE* 5.3 5.2 - - + -
431C CYS* 4.4 24.9 - - + +
435C ILE* 6.5 0.7 - - + -
354D TRP* 5.7 6.3 - - + -
402D ILE* 3.8 30.3 - - + -
405D LEU* 5.8 1.3 - - + -
406D THR* 4.1 23.6 - - + -
411D TYR* 3.4 18.8 + - + +
412D ASN* 4.2 2.5 - - - +
413D ILE 3.4 0.2 - - - -
414D LEU* 1.3 77.1 - - + +
416D ALA* 1.3 60.1 + - - +
418D LEU* 3.0 27.2 + - + +
419D ARG* 3.1 12.0 + - + +
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Residues in contact with ALA 416 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412D ASN* 3.0 27.9 + - - +
415D ILE* 1.3 74.4 - - - +
417D THR* 1.3 60.5 + - - +
419D ARG* 3.6 33.2 - - - +
420D VAL* 3.1 33.8 + - + +
524D ILE* 3.5 15.2 - - + +
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Residues in contact with THR 417 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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512C LEU* 4.6 12.6 - - + -
413D ILE 2.3 28.2 + - - -
414D LEU* 3.4 10.8 - - - -
415D ILE 3.1 0.4 - - - -
416D ALA* 1.3 76.8 - - - +
418D LEU* 1.3 62.8 + - - +
420D VAL* 3.4 6.3 - - - +
421D ALA* 3.3 22.7 + - - +
517D ILE* 4.7 10.0 - - + +
520D ALA* 4.5 5.4 - - + +
521D TYR* 4.0 42.1 - - + +
524D ILE* 3.4 17.2 - - + +
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Residues in contact with LEU 418 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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428C PHE* 4.7 11.0 - - + -
504C LEU* 6.4 0.2 - - + -
508C MET* 3.9 44.4 - - + +
509C VAL* 6.1 1.6 - - + -
512C LEU* 3.7 27.4 - - + -
414D LEU 3.4 14.3 + - - +
415D ILE* 3.0 17.0 + - + +
417D THR* 1.3 81.7 - - - +
419D ARG* 1.3 56.0 - - - +
421D ALA* 4.6 2.7 - - + -
422D LEU* 2.8 39.8 + - + +
517D ILE* 5.3 6.1 - - + -
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Residues in contact with ARG 419 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412D ASN* 5.6 3.2 + - - -
415D ILE* 3.1 13.9 + - + +
416D ALA* 3.3 29.2 + - - +
417D THR 3.3 0.4 - - - -
418D LEU* 1.3 77.8 - - - +
420D VAL* 1.3 67.1 + - - +
422D LEU* 4.3 6.5 - - - +
423D PRO* 3.3 18.9 - - - +
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Residues in contact with VAL 420 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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416D ALA* 3.1 19.6 + - + +
417D THR* 3.4 15.9 - - - +
419D ARG* 1.3 85.1 - - + +
421D ALA* 1.3 57.7 + - - +
423D PRO* 4.0 9.6 - - - +
424D SER* 4.6 7.1 + - - -
520D ALA* 4.3 23.1 - - + +
523D THR* 4.7 5.8 - - - +
524D ILE* 5.1 9.6 - - + -
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Residues in contact with ALA 421 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508C MET* 5.7 0.7 - - - -
417D THR 3.3 17.6 + - - +
418D LEU* 3.2 4.8 + - + +
420D VAL* 1.3 78.1 - - - +
422D LEU* 1.3 60.5 + - - +
423D PRO 3.3 2.5 - - - -
424D SER* 3.1 10.1 + - - +
425D VAL* 3.0 32.3 + - + +
516D LEU* 5.0 2.2 - - + +
517D ILE* 3.7 28.0 - - + -
520D ALA* 3.9 16.6 - - + -
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Residues in contact with LEU 422 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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508C MET* 4.9 20.4 - - + -
418D LEU* 2.8 26.4 + - + +
419D ARG* 4.3 5.2 - - - +
421D ALA* 1.3 69.0 - - - +
423D PRO* 1.4 70.2 - - + +
425D VAL* 4.4 5.1 - - - +
426D MET* 3.3 43.0 + - + +
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Residues in contact with PRO 423 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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419D ARG 3.3 19.1 - - - +
420D VAL* 4.0 8.3 - - - +
421D ALA 3.6 2.7 - - - -
422D LEU* 1.4 91.6 - - + +
424D SER* 1.3 57.5 + - - +
426D MET* 3.2 5.1 + - + +
427D ARG* 2.9 56.5 + - + +
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Residues in contact with SER 424 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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414A LEU* 4.1 5.7 - - - +
521A TYR* 5.6 1.3 + - - -
420D VAL 4.6 6.4 + - - -
421D ALA* 3.1 12.6 + - - +
423D PRO* 1.3 78.0 - - - +
425D VAL* 1.3 63.2 + - - +
427D ARG* 3.6 21.1 + - - +
428D PHE* 3.4 21.5 + - - +
516D LEU* 3.7 28.2 - - - +
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Residues in contact with VAL 425 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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507C TYR* 5.2 5.2 - - + +
508C MET* 4.4 31.4 - - + -
421D ALA* 3.0 17.3 + - + +
422D LEU 4.4 2.7 - - - +
424D SER* 1.3 78.4 - - - +
426D MET* 1.3 55.4 + - + +
428D PHE* 3.1 3.5 + - - +
429D CYS* 2.7 37.0 + - + +
513D PHE* 3.9 27.5 - - + -
516D LEU* 4.6 15.9 - - + -
517D ILE* 4.3 22.2 - - + -
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Residues in contact with MET 426 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411A TYR* 5.5 0.3 + - - -
508C MET* 5.7 8.3 - - + -
422D LEU* 3.3 33.7 + - + +
423D PRO* 3.2 4.3 + - + +
425D VAL* 1.3 79.3 - - + +
427D ARG* 1.3 65.9 + - - +
429D CYS* 4.2 16.8 - - - +
430D CYS* 3.8 14.6 + - - +
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Residues in contact with ARG 427 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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410A ASN* 3.7 39.4 + - - +
411A TYR* 3.5 38.6 - - + +
414A LEU* 4.3 10.1 - - + -
423D PRO* 2.9 56.2 + - - +
424D SER* 3.4 20.1 + - - +
425D VAL 3.2 0.2 - - - -
426D MET* 1.3 78.0 - - - +
428D PHE* 1.3 61.9 + - - +
430D CYS* 3.2 18.9 + - - +
431D CYS* 3.5 9.7 + - - -
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Residues in contact with PHE 428 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414A LEU* 3.6 38.1 - - + -
415A ILE* 5.2 4.5 - - + -
418A LEU* 4.6 12.6 - - + -
424D SER 3.4 9.5 + - - +
425D VAL 3.1 3.6 + - - +
427D ARG* 1.3 76.8 - - - +
429D CYS* 1.3 61.5 + - - +
431D CYS* 2.9 31.1 + - + +
432D VAL* 3.1 35.5 + - + +
509D VAL* 4.0 21.1 - - + -
512D LEU* 3.7 38.8 - - + -
513D PHE* 3.4 27.8 - + + -
516D LEU* 4.6 4.3 - - + -
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Residues in contact with CYS 429 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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503C SER* 5.9 3.1 - - - -
425D VAL* 2.7 24.0 + - + +
426D MET* 4.2 21.3 - - - +
427D ARG 3.3 0.2 - - - -
428D PHE* 1.3 72.6 - - - +
430D CYS* 1.3 59.7 + - - +
432D VAL* 4.2 6.0 - - - +
433D ALA* 3.2 25.6 + - - +
513D PHE* 4.8 12.8 - - + -
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Residues in contact with CYS 430 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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405A LEU* 4.5 16.6 - - + +
411A TYR* 5.2 9.0 - - - +
426D MET 3.8 8.9 + - - +
427D ARG* 3.2 11.9 + - - +
428D PHE 3.1 0.4 - - - -
429D CYS* 1.3 77.9 - - - +
431D CYS* 1.3 62.4 + - - +
432D VAL 3.2 1.0 + - - -
433D ALA* 4.2 4.5 - - - +
434D VAL* 3.3 29.7 + - - +
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Residues in contact with CYS 431 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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402A ILE* 4.7 7.7 - - + +
405A LEU* 3.6 27.1 - - - -
411A TYR* 4.7 13.2 - - - -
414A LEU* 5.2 3.1 - - - -
415A ILE* 4.3 27.8 - - + -
427D ARG 3.9 11.7 - - - -
428D PHE* 2.9 30.1 + - + +
430D CYS* 1.3 79.6 - - - +
432D VAL* 1.3 60.4 + - - +
434D VAL* 4.2 4.9 + - - +
435D ILE* 3.7 23.7 + - - +
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Residues in contact with VAL 432 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428D PHE* 3.1 46.8 + - + +
429D CYS* 4.2 5.4 - - - +
430D CYS 3.2 0.2 - - - -
431D CYS* 1.3 78.9 - - - +
433D ALA* 1.3 52.7 + - - +
434D VAL 3.1 2.2 - - - -
435D ILE* 3.0 11.6 + - + +
436D TYR* 2.7 33.9 + - + +
505D PHE* 3.7 31.9 - - + -
509D VAL* 3.8 16.8 - - + -
513D PHE* 5.1 4.9 - - + -
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Residues in contact with ALA 433 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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429D CYS* 3.2 19.8 + - - +
430D CYS* 3.7 5.8 + - - +
432D VAL* 1.3 79.5 - - - +
434D VAL* 1.3 58.7 + - + +
436D TYR* 3.8 12.9 - - + +
437D LEU* 3.0 38.5 + - + +
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Residues in contact with VAL 434 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A TRP* 3.2 47.7 - - + +
399A VAL* 4.9 0.2 - - - -
401A VAL* 3.9 24.9 - - + -
402A ILE* 4.4 12.8 - - + -
405A LEU* 5.2 7.2 - - + -
430D CYS* 3.3 25.7 + - - +
431D CYS* 4.3 7.2 - - - +
432D VAL 3.1 0.4 - - - -
433D ALA* 1.3 80.1 - - + +
435D ILE* 1.3 61.5 + - + +
437D LEU* 3.5 6.0 + - - +
438D GLY* 3.3 14.9 + - - -
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Residues in contact with ILE 435 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395A LEU* 5.9 0.4 - - + -
399A VAL* 4.3 22.9 - - + -
402A ILE* 3.7 29.8 - - + -
431D CYS 3.7 16.8 - - - +
432D VAL* 3.0 9.2 + - + +
434D VAL* 1.3 74.8 - - + +
436D TYR* 1.3 61.0 + - - +
438D GLY* 3.0 16.5 + - - +
439D TYR* 3.3 34.3 + - + -
504D LEU* 4.8 14.4 - - + -
505D PHE* 4.9 10.3 - - + -
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Residues in contact with TYR 436 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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499C TYR* 5.5 0.2 - - - -
432D VAL* 2.7 23.0 + - + +
433D ALA* 3.8 12.8 - - + +
434D VAL 3.3 0.2 - - - -
435D ILE* 1.3 74.2 - - - +
437D LEU* 1.3 70.9 + - + +
438D GLY 3.4 0.2 + - - -
439D TYR* 3.6 4.3 + - - +
440D CYS* 3.2 37.8 + - - -
461D SER* 2.8 43.2 + - - -
464D LEU* 4.2 18.7 - - + +
465D PHE* 3.4 27.0 + + + +
468D ILE* 5.9 1.8 - - + -
501D PHE* 4.3 8.1 - + - -
505D PHE* 3.9 27.1 - + + -
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Residues in contact with LEU 437 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398A TRP* 4.8 22.9 - - + -
433D ALA* 3.0 26.6 + - + +
434D VAL* 4.0 5.4 - - - +
435D ILE 3.3 0.2 - - - -
436D TYR* 1.3 87.4 - - + +
438D GLY* 1.3 63.5 + - - +
440D CYS* 3.8 11.3 - - + +
441D PHE* 3.1 45.1 + - + -
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Residues in contact with GLY 438 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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394A THR 4.6 1.3 - - - -
395A LEU* 3.5 24.4 + - - +
398A TRP* 4.4 16.6 - - - +
399A VAL* 6.1 0.9 - - - -
434D VAL 3.3 8.9 + - - -
435D ILE* 3.0 11.0 + - - -
437D LEU* 1.3 79.8 - - - +
439D TYR* 1.3 60.6 + - - +
441D PHE* 3.4 3.2 + - - +
442D CYS* 3.1 22.7 + - - +
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Residues in contact with TYR 439 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395A LEU* 3.7 29.1 - - + +
435D ILE* 3.3 36.8 + - + +
436D TYR 4.3 4.5 - - - +
437D LEU 3.4 0.2 - - - -
438D GLY* 1.3 72.9 - - - +
440D CYS* 1.3 60.8 + - - +
442D CYS* 4.4 1.6 - - - -
443D GLY* 2.9 15.4 + - - -
464D LEU* 4.2 4.7 - - + +
497D TYR* 2.3 53.8 + + - +
500D SER* 4.1 24.3 + - - -
501D PHE* 3.7 46.4 - + + -
504D LEU* 4.3 12.1 - - + +
505D PHE* 5.5 0.9 - + - -
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Residues in contact with CYS 440 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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436D TYR* 3.2 46.3 + - - +
437D LEU* 3.9 15.5 - - + +
438D GLY 3.3 0.6 - - - -
439D TYR* 1.3 78.1 - - - +
441D PHE* 1.3 62.9 + - + +
444D TRP* 3.3 23.9 + - - +
457D LEU* 5.1 10.6 - - + +
460D VAL* 3.9 15.8 - - + +
461D SER* 4.3 15.3 - - - +
464D LEU* 3.8 17.7 - - - -
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Residues in contact with PHE 441 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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77A THR* 4.2 17.0 - - + -
80A LEU* 3.7 29.8 - - + +
81A ILE* 3.8 22.2 - - + -
394A THR* 4.1 14.6 - - + -
398A TRP* 4.4 22.9 - + - -
437D LEU* 3.1 44.0 + - + +
438D GLY 4.1 1.3 - - - +
440D CYS* 1.3 77.0 - - + +
442D CYS* 1.3 64.9 + - - +
443D GLY 3.4 0.2 - - - -
444D TRP* 3.7 7.7 + + - -
445D ILE* 3.3 26.2 - - - +
457D LEU* 3.7 30.3 - - + -
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Residues in contact with CYS 442 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A GLY* 3.6 38.3 - - - +
392A THR 4.0 2.5 - - - -
394A THR* 5.7 0.2 - - - +
395A LEU* 3.8 26.0 - - + +
438D GLY 3.1 17.3 + - - +
439D TYR* 4.1 2.5 - - - +
440D CYS 3.4 0.2 - - - -
441D PHE* 1.3 79.5 - - - +
443D GLY* 1.3 62.0 + - - +
444D TRP 3.4 0.7 + - - -
445D ILE* 3.6 1.6 + - - +
446D VAL* 3.4 24.6 + - - +
493D PHE* 4.0 22.7 - - - -
497D TYR* 4.2 8.3 - - + -
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Residues in contact with GLY 443 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439D TYR 2.9 11.2 + - - -
440D CYS 4.4 0.2 - - - -
442D CYS* 1.3 75.7 - - - +
444D TRP* 1.3 61.3 + - - +
445D ILE 3.3 0.2 - - - -
446D VAL* 4.8 1.3 - - - -
447D LEU* 3.3 33.1 + - - +
448D GLY 3.8 1.0 + - - -
454D PHE* 4.3 7.3 - - - +
460D VAL* 5.1 7.9 - - - -
497D TYR* 3.4 27.9 + - - -
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Residues in contact with TRP 444 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 4.8 3.8 - - + -
81A ILE* 4.3 24.2 - - + -
84A GLY* 4.1 23.1 - - - -
85A LEU* 4.2 21.5 - - + -
88A GLN* 3.8 19.8 + - + +
440D CYS 3.3 19.4 + - - +
441D PHE* 4.1 6.5 - + - +
442D CYS 3.2 1.6 - - - -
443D GLY* 1.3 77.8 - - - +
445D ILE* 1.3 80.5 + - + +
448D GLY* 3.3 17.5 - - - -
449D PRO* 5.0 0.2 - - - +
454D PHE 3.8 7.6 - - - -
455D ARG 2.5 35.6 + - - -
456D SER* 3.6 13.3 - - - +
457D LEU* 3.5 33.9 - - + -
460D VAL* 4.4 8.7 - - + +
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Residues in contact with ILE 445 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A LEU* 3.7 29.4 - - + +
83A PHE* 4.5 17.5 - - + -
84A GLY* 4.6 15.3 - - - -
87A ASN* 5.4 4.9 + - - +
387A SER* 3.7 38.8 - - - +
390A LEU* 5.6 2.9 - - + -
391A GLY* 5.2 4.7 - - - +
441D PHE 3.3 22.9 - - - +
442D CYS 3.6 3.5 + - - +
443D GLY 3.3 0.2 - - - -
444D TRP* 1.3 103.7 - - + +
446D VAL* 1.3 67.7 + - + +
449D PRO* 3.4 17.7 - - - +
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Residues in contact with VAL 446 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387A SER* 3.9 26.7 + - - +
388A ILE* 4.0 23.6 - - + +
391A GLY* 5.1 1.3 - - - -
442D CYS* 3.4 20.9 + - - +
443D GLY* 5.1 0.2 - - - -
445D ILE* 1.3 81.0 - - + +
447D LEU* 1.3 65.2 + - + +
448D GLY 3.3 0.4 + - - -
449D PRO* 3.8 7.1 - - - +
450D TYR* 4.0 14.6 - - - -
490D VAL* 4.1 19.5 - - + +
493D PHE* 3.5 41.1 - - + -
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Residues in contact with LEU 447 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443D GLY* 3.3 16.2 + - - +
446D VAL* 1.3 88.0 - - + +
448D GLY* 1.3 63.5 + - - +
449D PRO 3.7 0.4 - - - -
450D TYR* 4.3 3.1 - - - +
451D HIS* 3.6 27.9 + - + +
454D PHE* 3.5 42.5 - - + +
480D MET* 4.2 13.2 - - - -
490D VAL* 4.2 15.0 - - + +
493D PHE* 5.3 1.3 - - + -
494D SER* 3.8 30.5 - - - -
497D TYR* 4.0 28.9 - - + -
498D LEU* 5.3 2.2 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il