Contacts of the helix formed by residues 63 - 106 (chain B) in PDB entry 6E7P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 63 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52B PRO* 4.6 29.2 - - + +
55B LYS* 5.6 6.5 - - + -
56B PHE* 4.3 24.9 - - + +
61B ARG* 4.3 11.2 - - + +
62B LYS* 1.3 79.9 - - - +
64B CYS* 1.3 63.7 + - - +
65B LYS* 3.2 6.9 + - + +
66B LEU* 3.8 15.3 + - + +
67B MET* 3.8 9.9 + - - +
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Residues in contact with CYS 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LYS* 2.7 18.5 + - - +
63B PRO* 1.3 70.5 - - - +
65B LYS* 1.3 64.2 + - + +
66B LEU 3.1 6.8 + - - -
67B MET* 3.3 25.0 + - + -
68B LEU* 3.4 16.1 + - - +
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Residues in contact with LYS 65 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61B ARG* 5.9 1.8 - - + -
62B LYS 5.9 0.2 - - - +
63B PRO* 3.2 4.9 - - + -
64B CYS* 1.3 81.2 - - + +
66B LEU* 1.3 55.7 + - - +
68B LEU* 4.8 5.5 + - - +
69B GLN* 5.2 3.5 + - - +
315B LEU* 3.5 48.1 - - + +
316B CYS* 5.8 0.9 - - - -
801B HZ7 2.5 65.5 + - - +
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Residues in contact with LEU 66 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52B PRO* 3.7 31.6 - - + -
55B LYS* 6.3 0.9 - - - +
63B PRO* 3.8 15.2 + - + +
64B CYS 3.1 0.6 - - - -
65B LYS* 1.3 77.6 - - - +
67B MET* 1.3 65.7 + - - +
68B LEU 3.2 2.0 - - - -
69B GLN* 3.2 22.0 + - + +
70B VAL* 3.8 10.9 + - + +
355B TYR* 6.1 0.2 - - - +
403B ARG* 5.2 10.8 - - - +
404B TYR* 3.9 36.6 - - + +
407B PHE* 4.4 6.5 - - + -
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Residues in contact with MET 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B PRO 3.8 5.2 + - - +
64B CYS* 3.3 26.2 + - + +
66B LEU* 1.3 78.0 - - + +
68B LEU* 1.3 65.9 + - - +
70B VAL* 3.1 28.6 + - + +
71B VAL* 3.5 19.3 - - + +
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Residues in contact with LEU 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64B CYS 3.4 12.8 + - - +
65B LYS* 5.2 4.7 - - - +
66B LEU 3.2 0.6 - - - -
67B MET* 1.3 79.8 - - - +
69B GLN* 1.3 61.5 + - - +
71B VAL* 3.1 35.7 + - + +
72B LYS* 3.7 7.6 + - - +
308B THR* 4.5 19.3 - - + +
311B LEU* 4.3 19.3 - - + +
312B SER* 4.2 29.4 - - - +
315B LEU* 5.5 7.4 - - + -
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Residues in contact with GLN 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B LYS 5.2 2.1 + - - +
66B LEU* 3.2 17.3 + - + +
67B MET 3.2 0.4 - - - -
68B LEU* 1.3 78.8 - - - +
70B VAL* 1.3 60.3 + - - +
72B LYS* 3.1 55.8 + - - +
73B ILE* 3.9 9.4 - - + +
312B SER* 3.7 10.1 + - - +
316B CYS* 4.4 3.6 - - - -
358B LEU* 3.4 43.8 - - + +
397B VAL* 5.0 6.1 - - - +
404B TYR* 3.3 18.8 - - + +
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Residues in contact with VAL 70 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B LEU* 3.8 17.3 - - + +
67B MET* 3.1 23.2 + - + +
69B GLN* 1.3 75.7 - - - +
71B VAL* 1.3 65.6 + - - +
73B ILE* 3.1 28.2 + - + +
74B LEU* 3.7 13.3 + - + +
404B TYR* 4.1 23.6 - - + +
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Residues in contact with VAL 71 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67B MET* 3.5 32.5 - - + +
68B LEU* 3.1 27.3 + - + +
70B VAL* 1.3 77.4 - - - +
72B LYS* 1.3 56.5 + - - +
74B LEU* 3.1 8.8 + - + +
75B VAL* 2.9 43.0 + - + +
308B THR* 4.6 19.1 - - + -
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Residues in contact with LYS 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B LEU 3.7 6.3 + - - +
69B GLN* 3.1 43.6 + - - +
71B VAL* 1.3 79.0 - - - +
73B ILE* 1.3 61.5 + - - +
75B VAL* 4.3 3.6 - - - +
76B VAL* 3.0 39.3 + - + +
308B THR* 5.2 9.8 + - - +
309B CYS* 4.5 16.2 - - - +
312B SER* 3.4 25.4 + - - -
358B LEU* 3.8 9.7 + - - +
361B SER* 4.2 5.3 + - - -
362B ASP* 2.7 40.1 + - - +
397B VAL* 4.7 18.2 - - + +
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Residues in contact with ILE 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69B GLN* 3.9 14.1 - - + +
70B VAL* 3.1 24.1 + - + +
72B LYS* 1.3 74.8 - - - +
74B LEU* 1.3 64.1 + - + +
77B THR* 3.0 27.5 + - - -
397B VAL* 3.7 29.8 - - + +
398B TRP* 4.1 33.6 - - + +
401B VAL* 3.9 26.5 - - + -
404B TYR* 6.0 4.5 - - + -
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Residues in contact with LEU 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B VAL* 4.1 17.5 - - + +
71B VAL* 3.1 9.9 + - + +
73B ILE* 1.3 88.0 - - + +
75B VAL* 1.3 68.1 + - + +
77B THR* 4.0 0.9 - - - -
78B VAL* 3.1 34.2 + - + +
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Residues in contact with VAL 75 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B VAL* 2.9 37.1 + - + +
72B LYS* 4.6 2.5 - - - +
74B LEU* 1.3 80.8 - - + +
76B VAL* 1.3 58.8 + - + +
78B VAL* 3.4 2.2 + - - +
79B GLN* 2.8 27.9 + - - +
301B PHE* 4.0 21.5 - - + -
304B VAL* 4.5 15.3 - - + -
305B VAL* 3.7 33.7 - - + +
308B THR* 4.5 7.9 - - - +
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Residues in contact with VAL 76 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B LYS* 3.0 26.0 + - + +
75B VAL* 1.3 77.3 - - + +
77B THR* 1.3 54.4 + - - +
79B GLN* 3.2 11.3 + - + +
80B LEU* 2.7 32.8 + - + +
305B VAL* 4.7 4.9 - - + -
308B THR* 5.9 0.4 - - - +
309B CYS* 4.0 26.0 - - - -
365B THR* 4.3 17.0 - - + +
390B LEU* 6.0 3.6 - - + -
393B SER* 4.4 10.3 - - - +
394B THR* 3.7 23.8 - - + +
397B VAL* 5.0 12.6 - - + -
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Residues in contact with THR 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441A PHE* 4.3 22.4 - - + -
72B LYS 4.9 0.3 + - - -
73B ILE* 3.0 22.6 + - - -
74B LEU* 3.6 2.4 + - - -
75B VAL 3.4 0.2 - - - -
76B VAL* 1.3 80.0 - - - +
78B VAL* 1.3 52.3 + - + +
80B LEU* 3.0 8.5 + - + +
81B ILE* 2.7 55.5 + - + +
394B THR* 4.4 6.0 - - + +
397B VAL* 6.1 0.2 - - - +
398B TRP* 3.1 26.2 + - + +
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Residues in contact with VAL 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74B LEU* 3.1 22.2 + - + +
75B VAL 4.0 2.7 - - - +
77B THR* 1.3 75.1 - - + +
79B GLN* 1.3 65.0 + - - +
81B ILE* 4.3 8.5 - - + +
82B LEU* 3.2 41.3 + - + +
301B PHE* 4.2 20.5 - - + -
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Residues in contact with GLN 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B VAL 2.8 19.5 + - - +
76B VAL* 3.2 10.3 + - + +
78B VAL* 1.3 77.4 - - - +
80B LEU* 1.3 59.2 + - - +
82B LEU* 4.3 0.9 - - - +
83B PHE* 3.3 17.9 + - - +
301B PHE* 3.9 17.7 - - + -
302B ASP* 3.9 17.7 + - - +
305B VAL* 3.9 15.4 - - + +
369B THR* 3.9 28.0 - - + +
372B LYS* 3.4 42.4 + - - +
390B LEU* 4.9 10.4 - - + +
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Residues in contact with LEU 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441A PHE* 3.7 36.6 - - + +
444A TRP* 4.8 0.9 - - + -
445A ILE* 3.7 32.3 - - + +
76B VAL* 2.7 17.3 + - + +
77B THR* 3.0 9.4 + - - +
79B GLN* 1.3 74.7 - - - +
81B ILE* 1.3 74.2 + - + +
83B PHE* 3.1 9.6 + - + +
84B GLY* 3.0 19.4 + - - -
390B LEU* 4.0 19.3 - - + +
391B GLY* 4.5 5.2 - - - -
394B THR* 3.3 32.8 - - + +
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Residues in contact with ILE 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441A PHE* 3.9 19.1 - - + -
444A TRP* 4.3 14.2 - - + -
457A LEU* 5.8 3.6 - - + -
77B THR* 2.7 39.2 + - + +
78B VAL* 4.5 6.1 - - + +
80B LEU* 1.3 85.7 - - + +
82B LEU* 1.3 68.1 + - + +
84B GLY* 3.1 14.9 + - - -
85B LEU* 3.2 32.5 + - + +
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Residues in contact with LEU 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B VAL* 3.2 33.9 + - + +
79B GLN 4.3 1.1 - - - +
81B ILE* 1.3 88.2 - - + +
83B PHE* 1.3 58.1 + - - +
85B LEU* 4.4 12.1 - - + +
86B SER* 3.6 15.8 + - - -
298B ARG* 4.8 22.4 + - + -
372B LYS* 5.8 0.7 + - - -
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Residues in contact with PHE 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445A ILE* 4.5 22.4 - - + -
79B GLN* 3.3 21.1 + - - +
80B LEU* 3.1 8.4 + - + +
81B ILE 3.1 1.0 - - - -
82B LEU* 1.3 78.4 - - - +
84B GLY* 1.3 65.2 + - - +
85B LEU 3.4 0.4 - - - -
86B SER* 3.1 21.4 + - - -
87B ASN* 3.2 35.0 + - + +
372B LYS* 3.8 41.7 - - + +
375B ILE* 5.0 15.5 - - + -
383B TYR* 5.2 6.5 - + - -
386B CYS* 4.3 21.5 - - - -
387B SER* 4.9 6.7 - - - -
390B LEU* 4.3 19.5 - - + -
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Residues in contact with GLY 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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444A TRP* 4.2 18.5 - - - -
445A ILE* 4.6 9.6 - - - -
80B LEU 3.0 12.2 + - - -
81B ILE 3.1 3.5 + - - -
83B PHE* 1.3 82.7 - - - +
85B LEU* 1.3 52.8 + - - +
87B ASN* 3.1 5.5 + - - +
88B GLN* 2.7 36.7 + - - +
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Residues in contact with LEU 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444A TRP* 4.2 14.1 - - + -
81B ILE* 3.2 28.8 + - + +
82B LEU* 4.4 10.3 - - + -
83B PHE 3.4 0.2 - - - -
84B GLY* 1.3 76.1 - - - +
86B SER* 1.3 61.4 + - - +
88B GLN* 3.8 20.9 - - - +
89B LEU* 3.5 24.9 + - - +
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Residues in contact with SER 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B LEU 3.6 12.5 + - - -
83B PHE* 3.1 19.3 + - - -
85B LEU* 1.3 78.2 - - - +
87B ASN* 1.3 59.7 + - - +
89B LEU* 4.2 4.5 + - - +
90B ALA* 4.0 15.9 + - - +
298B ARG* 3.9 23.5 + - - -
375B ILE* 5.3 7.6 - - - +
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Residues in contact with ASN 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445A ILE* 5.5 4.8 + - - +
449A PRO* 4.5 15.9 - - - +
83B PHE* 3.2 39.3 + - + +
84B GLY* 3.1 7.2 + - - +
86B SER* 1.3 81.5 + - - +
88B GLN* 1.3 64.7 + - - +
89B LEU 3.3 0.2 - - - -
90B ALA* 3.4 7.9 + - - +
91B VAL* 3.3 28.9 + - - +
94B ARG* 5.6 0.7 + - - -
383B TYR* 4.4 34.6 + - - +
387B SER* 5.9 2.2 - - - -
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Residues in contact with GLN 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444A TRP* 3.8 14.2 - - + +
455A ARG* 3.6 46.3 + - - +
456A SER* 4.8 8.7 - - - -
84B GLY 2.7 19.4 + - - +
85B LEU* 3.8 25.0 - - + +
87B ASN* 1.3 73.2 - - - +
89B LEU* 1.3 59.0 + - - +
91B VAL* 3.0 22.5 + - - +
92B THR* 3.3 20.7 + - + +
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Residues in contact with LEU 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B LEU 3.5 15.6 + - - +
86B SER* 4.6 4.7 - - - +
87B ASN 3.3 0.6 - - - -
88B GLN* 1.3 80.8 - - - +
90B ALA* 1.3 58.2 + - - +
92B THR* 3.2 24.3 + - + +
93B PHE* 3.7 9.2 + - - +
241B ASN* 5.7 0.7 + - - -
243B GLN* 3.6 34.7 - - + +
246B ILE* 4.5 21.1 - - + -
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Residues in contact with ALA 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B SER 4.0 11.2 + - - +
87B ASN* 3.4 13.3 + - - +
88B GLN 3.2 0.8 - - - -
89B LEU* 1.3 77.4 - - - +
91B VAL* 1.3 63.1 - - + +
92B THR 3.4 0.2 - - - -
93B PHE* 3.6 6.8 + - - +
94B ARG* 3.2 30.4 + - - +
241B ASN* 5.9 1.1 - - - +
252B ASP* 5.7 2.7 - - - +
254B TYR* 3.8 24.0 + - - +
281B ILE* 5.7 3.6 - - + -
383B TYR* 6.3 2.0 - - + -
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Residues in contact with VAL 91 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A PRO* 3.5 51.4 - - + +
455A ARG* 4.8 7.6 - - - +
87B ASN* 3.3 24.1 + - - +
88B GLN* 3.0 10.6 + - + +
90B ALA* 1.3 76.5 - - - +
92B THR* 1.3 59.9 + - + +
94B ARG* 2.8 25.7 + - + +
95B GLU* 2.7 42.1 + - + +
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Residues in contact with THR 92 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455A ARG* 3.7 24.7 - - + +
88B GLN* 3.5 21.8 - - + +
89B LEU* 3.2 21.5 + - + +
91B VAL* 1.3 76.6 - - - +
93B PHE* 1.3 61.9 + - - +
95B GLU* 3.9 10.2 - - - +
96B GLU* 3.2 34.3 + - - +
243B GLN* 5.4 3.1 + - - -
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Residues in contact with PHE 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A ALA* 3.8 27.8 - - + -
267A HIS* 4.2 12.1 - - + -
268A SER* 4.3 8.1 - - - -
89B LEU 3.7 9.5 + - - +
90B ALA* 3.6 9.8 + - - +
91B VAL 3.2 0.8 - - - -
92B THR* 1.3 82.7 + - - +
94B ARG* 1.3 62.4 + - - +
96B GLU* 4.4 1.7 - - - +
97B ASN* 2.9 52.7 + - - +
147B TYR* 6.3 0.4 - + - -
239B THR* 4.3 15.9 - - + -
240B ILE 4.9 2.0 - - - -
241B ASN* 4.1 29.2 - - - +
243B GLN* 5.2 6.3 - - - +
254B TYR* 3.5 44.0 - + - +
256B PHE* 3.9 11.7 - + - -
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Residues in contact with ARG 94 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A PRO* 5.7 2.0 - - - +
87B ASN* 5.6 0.4 + - - -
90B ALA* 3.2 17.1 + - - +
91B VAL* 2.8 40.4 + - + +
93B PHE* 1.3 81.5 - - - +
95B GLU* 1.3 58.4 + - + +
96B GLU 3.2 4.7 + - - -
97B ASN* 3.7 4.9 + - - +
98B THR* 3.3 22.7 - - + +
254B TYR* 5.3 2.7 - - + -
256B PHE* 4.7 10.8 - - + -
277B THR* 4.7 15.3 - - - +
278B GLN* 5.9 0.2 - - - +
279B ALA* 3.6 42.0 + - + +
281B ILE* 4.2 17.6 - - - +
383B TYR* 4.7 19.1 - - - -
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Residues in contact with GLU 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A PRO 4.3 7.8 - - - +
450A TYR 5.8 1.0 - - - -
452A VAL* 5.7 2.7 - - - +
455A ARG* 2.6 45.5 + - - -
91B VAL* 2.7 26.8 + - + +
92B THR* 3.9 10.0 - - - +
94B ARG* 1.3 73.1 - - + +
96B GLU* 1.3 57.7 + - + +
98B THR* 3.6 12.2 + - - +
99B ILE* 3.3 21.0 - - - +
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Residues in contact with GLU 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A ALA* 4.4 11.2 - - - +
268A SER* 3.7 25.6 + - - +
270A ARG* 2.8 47.2 + - - +
272A PRO* 5.1 2.9 - - - +
92B THR* 3.2 23.8 + - - +
93B PHE* 5.5 0.2 - - - -
94B ARG 3.2 0.8 - - - -
95B GLU* 1.3 80.5 - - + +
97B ASN* 1.3 63.0 + - - +
98B THR 3.3 0.9 - - - -
99B ILE* 3.9 6.7 - - + +
100B ALA* 3.1 23.7 + - - +
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Residues in contact with ASN 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267A HIS 4.9 0.4 + - - -
268A SER* 2.6 39.4 + - - +
93B PHE* 2.9 45.5 + - - +
94B ARG 3.7 0.6 + - - +
96B GLU* 1.3 76.5 - - - +
98B THR* 1.3 59.1 + - - +
100B ALA* 3.4 3.9 - - - +
101B PHE* 2.9 37.1 + - + -
147B TYR* 2.7 21.9 + - - +
256B PHE* 3.3 29.9 - - + -
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Residues in contact with THR 98 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B ARG* 3.3 17.9 - - + +
95B GLU* 3.6 15.2 + - - -
97B ASN* 1.3 75.6 - - + +
99B ILE* 1.3 74.5 + - - +
101B PHE* 2.8 24.0 + - - +
102B ARG* 2.9 33.1 + - - +
256B PHE* 5.7 0.7 - - + -
275B LEU* 4.7 8.2 - - - +
277B THR* 3.3 38.6 - - + +
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Residues in contact with ILE 99 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A TYR* 3.9 17.0 - - - +
270A ARG* 4.3 13.2 - - - +
95B GLU 3.3 21.5 - - - +
96B GLU* 3.7 10.3 + - + +
97B ASN 3.4 0.2 - - - -
98B THR* 1.3 87.3 + - - +
100B ALA* 1.3 61.3 + - - +
102B ARG* 3.7 26.0 + - - +
103B HIS* 3.1 37.5 + - + +
109B TYR* 5.4 4.9 - - + +
111B ASP* 5.2 3.1 - - - +
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Residues in contact with ALA 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A TYR* 4.1 12.4 - - - -
268A SER 3.8 10.3 - - - +
269A GLY* 3.4 26.9 - - - +
270A ARG* 4.6 1.6 - - + -
96B GLU 3.1 15.5 + - - +
97B ASN* 3.4 9.6 - - - +
98B THR 3.1 0.2 - - - -
99B ILE* 1.3 77.5 - - - +
101B PHE* 1.3 66.9 + - + +
103B HIS* 3.4 11.1 + - - +
104B LEU* 3.4 22.0 - - + +
147B TYR* 4.6 2.5 - - + +
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Residues in contact with PHE 101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B ASN* 2.9 25.0 + - + -
98B THR* 2.8 13.0 + - - +
100B ALA* 1.3 80.8 - - + +
102B ARG* 1.3 59.4 + - - +
104B LEU* 3.1 8.3 + - + +
105B PHE* 2.9 57.2 + + + +
139B LEU* 6.2 1.1 - - + -
147B TYR* 3.7 45.5 - + - -
237B LEU* 4.1 20.0 - - + -
256B PHE* 4.4 20.6 - + + -
258B VAL* 4.2 25.1 - - + -
275B LEU* 4.4 11.2 - - + -
277B THR* 4.4 9.4 - - + -
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Residues in contact with ARG 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486A ARG* 5.1 8.3 - - - +
98B THR* 2.9 29.1 + - - +
99B ILE* 4.3 24.2 - - - +
100B ALA 3.3 0.2 - - - -
101B PHE* 1.3 77.0 - - - +
103B HIS* 1.3 59.9 + - - +
104B LEU 3.1 1.3 + - - -
106B LEU* 3.5 42.8 + - + +
109B TYR* 3.7 37.6 + - + +
114B ASP* 2.9 33.5 + - - +
275B LEU* 3.9 43.6 + - + +
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Residues in contact with HIS 103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A TYR* 3.3 54.0 + + + +
121A THR* 5.6 1.7 - - - +
99B ILE* 3.1 25.8 - - + +
100B ALA 3.4 5.2 + - - +
101B PHE 3.2 0.6 - - - -
102B ARG* 1.3 78.2 - - - +
104B LEU* 1.3 65.5 + - - +
106B LEU 5.2 2.7 - - - -
109B TYR* 3.6 34.0 + + - -
110B SER* 4.7 1.3 - - - -
111B ASP* 2.7 36.0 + - - -
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Residues in contact with LEU 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A TYR* 4.6 15.9 - - + +
121A THR* 4.2 23.6 - - + -
269A GLY 5.7 2.0 - - - +
100B ALA* 3.4 19.5 - - + +
101B PHE* 3.1 19.1 + - + +
103B HIS* 1.3 86.0 - - - +
105B PHE* 1.3 72.1 + - + +
106B LEU 3.7 1.3 - - - -
131B HIS* 4.2 6.6 + - - -
135B GLN* 3.3 42.8 + - + +
139B LEU* 4.7 9.2 - - + -
142B VAL* 5.5 1.3 - - + -
143B SER* 3.6 32.5 - - - +
147B TYR* 5.7 1.8 - - + -
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Residues in contact with PHE 105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101B PHE* 2.9 48.2 + + + +
104B LEU* 1.3 94.4 - - + +
106B LEU* 1.3 68.0 + - - +
107B LEU 4.2 0.6 + - - -
128B ALA 4.9 1.9 - - - +
131B HIS* 4.6 5.1 - - - -
132B ALA* 3.7 33.0 + - + +
135B GLN* 4.0 22.7 - - + -
136B TYR* 4.2 14.8 - + - -
139B LEU* 4.5 17.3 - - + -
235B PHE* 3.4 37.2 - + - -
237B LEU* 5.1 3.4 - - + -
258B VAL* 5.0 1.3 - - + -
260B ILE* 3.9 19.3 - - + +
275B LEU* 4.6 7.0 - - + -
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Residues in contact with LEU 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B ARG* 3.5 45.3 + - + +
103B HIS* 5.3 2.1 - - - -
104B LEU 3.7 1.1 - - - -
105B PHE* 1.3 89.3 + - - +
107B LEU* 1.3 63.9 + - - +
108B GLY 3.1 4.3 + - - -
109B TYR* 3.6 28.2 + - + +
117B PHE* 4.4 10.3 - - + -
128B ALA 6.0 0.2 - - - -
131B HIS* 4.3 5.1 + - - -
260B ILE* 4.4 14.6 - - + -
262B PHE* 5.8 1.6 - - + -
273B ILE* 3.7 31.9 - - + +
274B SER 4.6 5.6 - - - +
275B LEU* 4.6 14.4 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il