Contacts of the helix formed by residues 63 - 106 (chain C) in PDB entry 6E7P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 63 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52C PRO* 4.6 29.4 - - + +
55C LYS* 5.6 7.0 - - + -
56C PHE* 4.3 24.5 - - + +
61C ARG* 4.6 11.2 - - + -
62C LYS* 1.3 81.5 - - - +
64C CYS* 1.3 63.9 + - - +
65C LYS* 3.2 7.6 + - + +
66C LEU* 3.8 15.3 + - + +
67C MET* 3.8 9.5 + - - +
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Residues in contact with CYS 64 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C LYS* 2.7 19.2 + - - +
63C PRO* 1.3 69.7 - - - +
65C LYS* 1.3 63.6 + - + +
66C LEU 3.1 6.0 + - - -
67C MET* 3.3 24.7 + - + -
68C LEU* 3.4 16.3 + - - +
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Residues in contact with LYS 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C ARG* 5.9 1.3 - - + -
62C LYS 5.9 0.2 - - - +
63C PRO* 3.2 5.2 - - + -
64C CYS* 1.3 82.0 - - - +
66C LEU* 1.3 56.4 + - - +
68C LEU* 4.8 5.7 + - - +
69C GLN* 5.2 2.8 + - - +
315C LEU* 3.5 46.2 - - + +
316C CYS* 5.8 0.9 - - - -
801C HZ7 2.5 65.3 + - - +
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Residues in contact with LEU 66 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C PRO* 3.7 33.2 - - + -
55C LYS* 6.3 0.7 - - - +
63C PRO* 3.8 15.8 + - + +
64C CYS 3.1 0.2 - - - -
65C LYS* 1.3 78.9 - - - +
67C MET* 1.3 64.0 + - - +
68C LEU 3.2 2.5 - - - -
69C GLN* 3.2 22.4 + - - +
70C VAL* 3.8 10.7 + - + +
355C TYR* 6.1 0.2 - - - +
403C ARG* 5.2 10.3 - - - +
404C TYR* 3.9 37.0 - - + +
407C PHE* 4.4 6.5 - - + -
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Residues in contact with MET 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C PRO 3.8 4.8 + - - +
64C CYS* 3.3 27.3 + - + +
66C LEU* 1.3 79.1 - - + +
68C LEU* 1.3 65.2 + - - +
70C VAL* 3.1 28.6 + - + +
71C VAL* 3.5 19.3 + - + +
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Residues in contact with LEU 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C CYS 3.4 12.6 + - - +
65C LYS* 5.2 4.3 - - - +
66C LEU 3.2 1.0 - - - -
67C MET* 1.3 77.9 - - - +
69C GLN* 1.3 61.5 + - - +
71C VAL* 3.1 35.2 + - + +
72C LYS* 3.7 6.8 + - - +
308C THR* 4.5 19.8 - - + +
311C LEU* 4.3 18.8 - - + +
312C SER* 4.2 30.2 - - - +
315C LEU* 5.5 7.2 - - + -
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Residues in contact with GLN 69 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C LYS 5.2 2.6 + - - +
66C LEU* 3.2 16.2 + - - +
67C MET 3.2 0.2 - - - -
68C LEU* 1.3 80.0 - - - +
70C VAL* 1.3 60.8 + - - +
72C LYS* 3.1 54.4 + - - +
73C ILE* 3.9 8.9 - - + +
312C SER* 3.7 10.1 + - - +
316C CYS* 4.4 3.8 - - - -
358C LEU* 3.4 44.1 - - + +
397C VAL* 5.0 6.6 - - - +
404C TYR* 3.3 20.6 - - + +
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Residues in contact with VAL 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C LEU* 3.8 16.4 - - + +
67C MET* 3.1 24.3 + - + +
69C GLN* 1.3 76.3 - - - +
71C VAL* 1.3 64.7 + - + +
73C ILE* 3.1 28.0 + - + +
74C LEU* 3.7 12.5 + - + +
404C TYR* 4.1 22.7 - - + -
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Residues in contact with VAL 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67C MET* 3.5 32.3 - - + +
68C LEU* 3.1 25.5 + - + +
70C VAL* 1.3 78.2 - - - +
72C LYS* 1.3 55.8 + - - +
74C LEU* 3.1 8.6 + - + +
75C VAL* 2.9 43.5 + - + +
304C VAL* 6.4 0.2 - - + -
308C THR* 4.6 18.2 - - + -
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Residues in contact with LYS 72 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C LEU 3.7 6.5 + - - +
69C GLN* 3.1 44.8 + - - +
70C VAL 3.2 0.4 - - - -
71C VAL* 1.3 79.1 - - - +
73C ILE* 1.3 61.2 + - - +
75C VAL* 4.3 2.9 - - - +
76C VAL* 3.0 38.2 + - + +
77C THR* 4.9 0.2 + - - -
308C THR* 5.2 9.4 + - - +
309C CYS* 4.5 16.4 - - - +
312C SER* 3.4 25.2 + - - -
358C LEU* 3.8 9.5 + - - +
361C SER* 4.2 4.6 + - - -
362C ASP* 2.7 40.5 + - - +
397C VAL* 4.7 17.6 - - + +
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Residues in contact with ILE 73 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C GLN* 3.9 13.5 - - - +
70C VAL* 3.1 24.1 + - + +
72C LYS* 1.3 75.4 - - - +
74C LEU* 1.3 66.4 + - + +
77C THR* 3.0 27.6 + - - -
397C VAL* 3.7 29.6 - - + +
398C TRP* 4.1 33.5 - - + +
400C GLY 6.1 0.4 - - - -
401C VAL* 3.9 26.0 - - + -
404C TYR* 6.0 4.5 - - + -
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Residues in contact with LEU 74 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70C VAL* 3.7 17.7 + - + +
71C VAL* 3.1 9.7 + - + +
73C ILE* 1.3 86.8 - - + +
75C VAL* 1.3 68.4 + - + +
77C THR* 4.0 1.0 - - - -
78C VAL* 3.1 33.7 + - + +
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Residues in contact with VAL 75 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C VAL* 2.9 37.7 + - + +
72C LYS* 4.6 2.2 - - - +
74C LEU* 1.3 80.6 - - + +
76C VAL* 1.3 61.0 + - + +
78C VAL* 3.4 1.8 + - - +
79C GLN* 2.8 28.1 + - - +
301C PHE* 4.0 21.3 - - + -
304C VAL* 4.5 15.0 - - + -
305C VAL* 3.7 34.1 - - + +
308C THR* 4.5 7.9 - - + +
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Residues in contact with VAL 76 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72C LYS* 3.0 26.7 + - + +
75C VAL* 1.3 78.6 - - + +
77C THR* 1.3 52.5 + - - +
79C GLN* 3.2 11.5 + - + +
80C LEU* 2.7 32.8 + - + +
305C VAL* 4.7 4.9 - - + -
309C CYS* 4.0 27.1 - - - -
365C THR* 4.3 15.3 - - + +
390C LEU* 5.4 3.8 - - + +
393C SER* 4.4 10.1 - - - +
394C THR* 3.7 24.0 - - + +
397C VAL* 5.0 11.7 - - + -
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Residues in contact with THR 77 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441B PHE* 4.3 22.9 - - + -
73C ILE* 3.0 23.1 + - - -
74C LEU* 3.6 2.4 + - - -
75C VAL 3.4 0.2 - - - -
76C VAL* 1.3 78.5 - - - +
78C VAL* 1.3 53.9 + - + +
80C LEU* 3.0 8.8 + - + +
81C ILE* 2.7 56.0 + - + +
394C THR* 4.4 5.8 - - + +
397C VAL* 6.1 0.2 - - - +
398C TRP* 3.1 26.5 + - + +
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Residues in contact with VAL 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74C LEU* 3.1 23.4 + - + +
75C VAL 4.0 2.5 - - - +
77C THR* 1.3 75.5 - - + +
79C GLN* 1.3 64.7 + - - +
81C ILE* 4.3 8.3 - - + +
82C LEU* 3.2 41.0 + - + +
301C PHE* 4.2 21.9 - - + -
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Residues in contact with GLN 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C VAL 2.8 18.6 + - - +
76C VAL* 3.3 10.5 - - + +
78C VAL* 1.3 76.8 - - - +
80C LEU* 1.3 60.2 + - - +
82C LEU* 5.1 0.2 - - - +
83C PHE* 3.3 18.4 + - - +
301C PHE* 3.9 18.9 - - + -
302C ASP* 3.9 17.0 + - - +
305C VAL* 3.9 15.2 - - + +
369C THR* 3.9 28.0 - - + +
372C LYS* 3.4 43.2 + - - +
390C LEU* 4.9 9.0 - - + +
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Residues in contact with LEU 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B PHE* 3.7 37.0 - - + +
444B TRP* 4.8 1.3 - - + -
445B ILE* 3.7 31.7 - - + +
76C VAL* 2.7 16.2 + - + +
77C THR* 3.0 10.3 + - - +
79C GLN* 1.3 74.4 - - - +
81C ILE* 1.3 70.9 + - + +
83C PHE* 3.1 8.9 + - + +
84C GLY* 3.0 19.2 + - - -
390C LEU* 4.0 20.2 - - + +
391C GLY* 4.5 5.4 - - - -
394C THR* 3.3 33.7 - - + +
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Residues in contact with ILE 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B PHE* 3.9 19.3 - - + -
444B TRP* 4.3 13.9 - - + -
457B LEU* 5.8 2.9 - - + -
77C THR* 2.7 39.6 + - + +
78C VAL* 4.5 6.5 - - + +
80C LEU* 1.3 86.2 - - + +
82C LEU* 1.3 68.8 + - + +
84C GLY* 3.1 14.6 + - - -
85C LEU* 3.2 32.1 + - + +
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Residues in contact with LEU 82 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78C VAL* 3.2 33.9 + - + +
79C GLN* 4.3 1.3 - - - +
81C ILE* 1.3 90.2 - - + +
83C PHE* 1.3 58.4 + - - +
85C LEU* 4.4 11.7 - - + +
86C SER* 3.6 16.3 + - - -
298C ARG* 4.8 22.3 + - + -
372C LYS* 5.8 1.2 + - - -
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Residues in contact with PHE 83 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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445B ILE* 4.5 22.9 - - + -
79C GLN* 3.3 21.8 + - - +
80C LEU* 3.1 9.0 + - + +
81C ILE 3.1 0.8 - - - -
82C LEU* 1.3 78.8 - - - +
84C GLY* 1.3 65.0 + - - +
85C LEU 3.4 0.4 - - - -
86C SER* 3.1 20.7 + - - -
87C ASN* 3.2 34.5 + - + +
372C LYS* 3.8 41.1 - - + +
375C ILE* 5.0 15.5 - - + -
383C TYR* 5.2 7.2 - + - -
386C CYS* 4.3 21.8 - - - -
387C SER* 4.9 7.0 - - - -
390C LEU* 4.3 19.5 - - + -
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Residues in contact with GLY 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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444B TRP* 4.2 19.2 - - - -
445B ILE* 4.6 9.4 - - - -
80C LEU 3.0 13.0 + - - -
81C ILE 3.1 3.5 + - - -
83C PHE* 1.3 82.8 - - - +
85C LEU* 1.3 53.2 + - - +
87C ASN* 3.1 6.2 + - - +
88C GLN* 2.7 37.2 + - - +
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Residues in contact with LEU 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444B TRP* 4.2 13.5 - - + -
81C ILE* 3.2 28.4 + - + +
82C LEU* 5.0 10.5 - - + -
83C PHE 3.4 0.2 - - - -
84C GLY* 1.3 76.8 - - - +
86C SER* 1.3 61.0 + - - +
88C GLN* 3.8 22.0 - - - +
89C LEU* 3.5 24.1 + - - +
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Residues in contact with SER 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C LEU 3.6 12.7 + - - -
83C PHE* 3.1 20.2 + - - -
85C LEU* 1.3 78.0 - - - +
87C ASN* 1.3 59.7 + - - +
89C LEU* 4.2 4.8 + - - +
90C ALA* 4.0 15.9 + - - +
298C ARG* 3.9 24.2 + - - -
375C ILE* 5.3 7.8 - - - +
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Residues in contact with ASN 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445B ILE* 5.5 4.9 + - - +
449B PRO* 4.5 15.4 - - - +
83C PHE* 3.2 39.2 + - + +
84C GLY* 3.1 7.0 + - - +
86C SER* 1.3 80.4 + - - +
88C GLN* 1.3 62.7 + - - +
89C LEU 3.3 0.2 - - - -
90C ALA* 3.4 7.6 + - - +
91C VAL* 3.3 29.5 + - - +
94C ARG* 5.6 0.5 + - - -
383C TYR* 4.4 33.8 + - - +
387C SER* 5.9 2.4 - - - -
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Residues in contact with GLN 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444B TRP* 3.8 13.6 - - + +
455B ARG* 3.6 46.3 + - - +
456B SER* 4.8 7.5 - - - -
84C GLY 2.7 19.7 + - - +
85C LEU* 3.8 24.2 - - - +
86C SER 3.6 0.2 - - - -
87C ASN* 1.3 72.8 - - - +
89C LEU* 1.3 58.6 + - - +
91C VAL* 3.0 22.8 + - - +
92C THR* 3.3 20.1 + - + +
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Residues in contact with LEU 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C LEU 3.5 14.7 + - - +
86C SER* 4.6 5.2 - - - +
87C ASN 3.3 0.4 - - - -
88C GLN* 1.3 80.2 - - - +
90C ALA* 1.3 58.7 + - - +
92C THR* 3.2 24.0 + - - +
93C PHE* 3.7 9.4 + - - +
241C ASN* 5.7 0.3 + - - -
243C GLN* 3.6 33.4 - - + +
246C ILE* 4.5 21.8 - - + -
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Residues in contact with ALA 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86C SER 4.0 11.2 + - - +
87C ASN* 3.4 13.5 + - - +
88C GLN 3.2 0.8 - - - -
89C LEU* 1.3 78.2 - - - +
91C VAL* 1.3 62.3 + - - +
93C PHE* 3.6 7.0 + - - +
94C ARG* 3.2 30.6 + - - +
241C ASN* 5.9 1.8 - - - +
252C ASP* 5.7 2.5 - - - +
254C TYR* 3.8 22.9 + - + +
281C ILE* 5.7 3.4 - - + -
383C TYR* 6.3 2.2 - - + -
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Residues in contact with VAL 91 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B PRO* 3.5 50.5 - - + +
455B ARG* 4.8 7.2 - - - +
87C ASN* 3.3 23.8 - - - +
88C GLN* 3.0 11.5 + - + +
90C ALA* 1.3 77.0 - - - +
92C THR* 1.3 59.3 + - + +
94C ARG* 2.8 26.1 + - + +
95C GLU* 2.7 42.4 + - + +
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Residues in contact with THR 92 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455B ARG* 3.7 23.3 - - + +
88C GLN* 3.3 21.7 + - + +
89C LEU* 3.2 21.8 + - + +
91C VAL* 1.3 75.3 - - + +
93C PHE* 1.3 62.6 + - - +
95C GLU* 3.9 10.7 - - - +
96C GLU* 3.2 33.9 + - - +
243C GLN* 5.4 3.1 + - - -
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Residues in contact with PHE 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266B ALA* 3.8 27.8 - - + -
267B HIS 4.2 11.9 - - - -
268B SER* 4.3 9.4 - - - -
89C LEU 3.7 9.7 + - - +
90C ALA* 3.6 8.9 + - - +
91C VAL 3.2 1.0 - - - -
92C THR* 1.3 82.3 + - - +
94C ARG* 1.3 63.0 + - - +
96C GLU* 4.4 1.5 - - - +
97C ASN* 2.9 52.0 + - - +
147C TYR* 6.3 0.2 - + - -
239C THR* 4.3 16.6 - - + -
240C ILE 4.9 2.0 - - - -
241C ASN* 4.1 28.5 - - - +
243C GLN* 5.2 6.7 - - - +
254C TYR* 3.5 44.2 - + - -
256C PHE* 3.9 12.6 - + - -
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Residues in contact with ARG 94 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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449B PRO* 5.7 1.8 - - - +
87C ASN* 5.6 0.6 + - - -
90C ALA* 3.2 15.9 + - - +
91C VAL* 2.8 39.7 + - + +
93C PHE* 1.3 81.2 - - - +
95C GLU* 1.3 58.0 + - + +
96C GLU 3.2 4.3 + - - -
97C ASN* 3.7 5.4 + - - +
98C THR* 3.3 22.1 - - + +
254C TYR* 5.3 2.8 - - + -
256C PHE* 4.7 10.8 - - + -
277C THR* 4.7 15.9 - - - +
278C GLN* 5.9 0.2 - - - +
279C ALA* 3.6 41.2 + - + +
281C ILE* 4.2 17.2 - - - +
383C TYR* 4.7 19.1 - - - -
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Residues in contact with GLU 95 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B PRO 4.3 7.8 - - - +
450B TYR 5.8 0.9 - - - -
451B HIS 5.7 0.2 - - - -
452B VAL* 5.7 2.5 - - - +
455B ARG* 2.6 44.1 + - - -
91C VAL* 2.7 26.5 + - + +
92C THR* 3.9 10.3 - - - +
94C ARG* 1.3 74.3 - - + +
96C GLU* 1.3 58.8 + - + +
98C THR* 3.6 10.7 + - - -
99C ILE* 3.3 21.1 - - - +
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Residues in contact with GLU 96 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266B ALA* 4.4 12.6 - - - +
268B SER* 3.7 25.1 + - - +
270B ARG* 2.8 46.6 + - - +
272B PRO* 5.1 2.8 - - - +
92C THR* 3.2 23.2 + - - +
93C PHE 4.7 0.2 - - - +
94C ARG 3.2 0.6 - - - -
95C GLU* 1.3 80.4 - - + +
97C ASN* 1.3 61.6 + - - +
98C THR 3.3 1.1 - - - -
99C ILE* 3.7 6.9 + - + +
100C ALA* 3.1 23.4 + - - +
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Residues in contact with ASN 97 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267B HIS 4.9 0.2 + - - -
268B SER* 2.6 39.4 + - - +
93C PHE* 2.9 45.7 + - - +
94C ARG 3.7 1.1 + - - +
96C GLU* 1.3 76.1 - - - +
98C THR* 1.3 59.5 + - - +
100C ALA* 3.4 4.4 - - - +
101C PHE* 2.9 36.3 + - + -
147C TYR* 2.7 22.2 + - - +
256C PHE* 3.3 30.8 - - + -
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Residues in contact with THR 98 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C ARG* 3.3 18.4 - - + +
95C GLU* 3.6 15.7 + - - +
97C ASN* 1.3 76.2 - - + +
99C ILE* 1.3 74.9 + - - +
101C PHE* 2.8 23.6 + - - +
102C ARG* 2.9 32.3 + - - +
256C PHE* 5.7 0.7 - - + -
275C LEU* 4.7 7.8 - - - +
277C THR* 3.3 37.5 - - + +
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Residues in contact with ILE 99 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B TYR* 3.9 17.2 - - - +
270B ARG* 4.3 13.2 - - - +
95C GLU 3.3 21.1 - - - +
96C GLU* 3.7 10.5 + - + +
97C ASN 3.4 0.2 - - - -
98C THR* 1.3 83.9 + - - +
100C ALA* 1.3 62.2 + - - +
102C ARG* 3.7 25.9 + - - +
103C HIS* 3.1 37.7 + - + +
109C TYR* 5.4 4.5 - - + +
111C ASP* 5.2 3.6 - - - +
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Residues in contact with ALA 100 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B TYR* 4.1 12.0 - - - -
268B SER 3.8 9.6 - - - +
269B GLY* 3.3 27.4 - - - +
270B ARG* 4.6 1.5 - - + +
96C GLU 3.1 15.5 + - - +
97C ASN* 3.4 10.5 - - - +
98C THR 3.1 0.2 - - - -
99C ILE* 1.3 77.1 - - - +
101C PHE* 1.3 66.6 + - + +
103C HIS* 3.4 11.3 + - - +
104C LEU* 3.4 22.9 + - + +
147C TYR* 4.6 3.1 - - + +
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Residues in contact with PHE 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97C ASN* 2.9 24.5 + - + -
98C THR* 2.8 12.5 + - - +
100C ALA* 1.3 81.0 - - + +
102C ARG* 1.3 58.5 + - - +
104C LEU* 3.1 8.8 + - + +
105C PHE* 2.9 56.6 + + + +
139C LEU* 6.2 1.3 - - + -
147C TYR* 3.7 45.3 - + - -
237C LEU* 4.1 19.7 - - + -
256C PHE* 4.4 21.1 - + + -
258C VAL* 4.2 26.0 - - + -
275C LEU* 4.4 12.1 - - + -
277C THR* 4.4 8.7 - - + -
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Residues in contact with ARG 102 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486B ARG* 5.2 8.9 - - - +
98C THR* 2.9 30.2 + - - +
99C ILE* 4.3 21.6 - - - +
100C ALA 3.3 0.2 - - - -
101C PHE* 1.3 77.3 - - - +
103C HIS* 1.3 59.0 + - - +
104C LEU 3.1 1.3 + - - -
106C LEU* 3.5 42.5 + - + +
109C TYR* 3.7 39.6 + - + +
114C ASP* 2.9 33.7 + - - +
275C LEU* 3.9 43.1 + - + +
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Residues in contact with HIS 103 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B TYR* 3.3 53.9 + + + +
121B THR* 5.6 1.2 - - - +
99C ILE* 3.1 25.2 - - + +
100C ALA 3.4 5.5 + - - +
101C PHE 3.2 0.8 - - - -
102C ARG* 1.3 76.4 - - - +
104C LEU* 1.3 66.5 + - - +
106C LEU 5.2 2.7 - - - -
109C TYR* 3.6 35.3 + + - -
110C SER* 4.4 0.9 - - - -
111C ASP* 2.7 35.7 + - - -
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Residues in contact with LEU 104 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B TYR* 4.6 15.9 - - + +
121B THR* 4.2 24.2 - - + -
269B GLY 5.7 1.8 - - - +
100C ALA* 3.4 19.5 - - + +
101C PHE* 3.1 17.3 + - + +
103C HIS* 1.3 86.7 - - - +
105C PHE* 1.3 70.5 + - + +
106C LEU 3.7 1.6 - - - -
131C HIS* 4.2 6.9 + - - -
135C GLN* 3.3 42.8 + - - +
139C LEU* 4.7 9.4 - - + -
142C VAL* 5.5 1.1 - - + -
143C SER* 3.6 32.1 - - - +
147C TYR* 5.7 2.2 - - + -
----------------------------------------------------------
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Residues in contact with PHE 105 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101C PHE* 2.9 50.4 + + + +
104C LEU* 1.3 93.6 - - + +
106C LEU* 1.3 69.0 - - - +
107C LEU 4.3 0.7 + - - -
128C ALA 4.9 1.7 - - - +
131C HIS* 4.6 5.5 - - - -
132C ALA* 3.7 34.8 + - + +
135C GLN* 4.0 22.7 - - + -
136C TYR* 4.2 14.4 - + + -
139C LEU* 4.5 17.5 - - + -
235C PHE* 3.4 37.0 - + - -
237C LEU* 5.1 3.6 - - + -
258C VAL* 5.0 0.7 - - + -
260C ILE* 3.9 20.3 - - + +
275C LEU* 4.6 7.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 106 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102C ARG* 3.5 44.9 + - + +
103C HIS* 5.3 1.9 - - - -
104C LEU 3.7 1.1 - - - -
105C PHE* 1.3 89.2 + - + +
107C LEU* 1.3 65.3 + - - +
108C GLY 3.1 4.0 + - - -
109C TYR* 3.6 28.2 + - + +
117C PHE* 4.4 10.5 - - + -
128C ALA 6.0 0.2 - - - -
131C HIS* 4.3 4.1 + - - -
260C ILE* 4.4 15.3 - - + -
262C PHE* 5.8 1.6 - - + -
273C ILE* 3.7 30.7 - - + +
274C SER 4.6 5.8 - - - +
275C LEU* 4.6 14.8 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il