Contacts of the helix formed by residues 63 - 106 (chain D) in PDB entry 6E7P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 63 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52D PRO* 4.6 28.7 - - + +
55D LYS* 5.6 7.2 - - + -
56D PHE* 4.3 24.2 - - + +
61D ARG* 4.3 11.9 - - + +
62D LYS* 1.3 80.6 - - - +
64D CYS* 1.3 62.6 + - - +
65D LYS* 3.2 8.6 + - + +
66D LEU* 3.8 15.5 + - + +
67D MET* 3.8 9.4 + - - +
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Residues in contact with CYS 64 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D LYS* 2.7 19.3 + - - +
63D PRO* 1.3 70.1 - - - +
65D LYS* 1.3 63.8 + - + +
66D LEU 3.1 6.5 + - - -
67D MET* 3.3 24.7 + - + +
68D LEU* 3.4 15.8 + - - +
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Residues in contact with LYS 65 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61D ARG* 5.9 1.1 - - + -
62D LYS 5.9 0.2 - - - +
63D PRO* 3.2 5.6 - - + -
64D CYS* 1.3 80.6 - - - +
66D LEU* 1.3 56.4 + - - +
68D LEU* 4.8 5.7 + - - +
69D GLN* 5.2 2.6 + - - +
315D LEU* 3.5 48.0 - - + +
316D CYS* 5.8 0.9 - - - -
801D HZ7 2.5 66.0 + - - +
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Residues in contact with LEU 66 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52D PRO* 3.7 33.2 - - + -
55D LYS* 6.3 0.7 - - - +
63D PRO* 3.8 15.6 + - + +
64D CYS 3.1 0.4 - - - -
65D LYS* 1.3 78.1 - - - +
67D MET* 1.3 65.7 + - + +
68D LEU 3.2 2.9 - - - -
69D GLN* 3.2 20.9 + - - +
70D VAL* 3.8 10.5 + - + +
355D TYR* 6.1 0.2 - - - +
403D ARG* 5.2 10.5 - - - +
404D TYR* 3.9 36.8 - - + +
407D PHE* 4.4 7.0 - - + -
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Residues in contact with MET 67 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63D PRO 3.8 5.5 + - - +
64D CYS* 3.3 26.6 + - + +
66D LEU* 1.3 78.0 - - - +
68D LEU* 1.3 66.2 + - - +
70D VAL* 3.1 29.3 + - + +
71D VAL* 3.5 19.1 + - + +
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Residues in contact with LEU 68 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64D CYS 3.4 13.2 + - - +
65D LYS* 5.2 4.3 - - - +
66D LEU 3.2 1.0 - - - -
67D MET* 1.3 79.2 - - - +
69D GLN* 1.3 61.5 + - - +
71D VAL* 3.1 36.1 + - + +
72D LYS* 3.7 7.8 + - - +
308D THR* 4.5 18.9 - - + +
311D LEU* 4.3 18.6 - - + +
312D SER* 4.2 30.5 - - - +
315D LEU* 5.5 7.4 - - + -
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Residues in contact with GLN 69 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65D LYS 5.2 2.4 + - - +
66D LEU* 3.2 16.2 + - - +
67D MET 3.2 0.4 - - - -
68D LEU* 1.3 79.2 - - - +
70D VAL* 1.3 59.3 + - - +
72D LYS* 3.1 55.5 + - - +
73D ILE* 3.9 9.1 - - + +
312D SER* 3.7 10.1 + - - +
316D CYS* 4.4 4.0 - - - -
358D LEU* 3.4 45.0 - - + +
397D VAL* 5.0 6.6 - - - +
404D TYR* 3.3 20.2 - - + +
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Residues in contact with VAL 70 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66D LEU* 3.8 16.6 - - + +
67D MET* 3.1 22.8 + - + +
69D GLN* 1.3 76.1 - - - +
71D VAL* 1.3 64.7 + - - +
73D ILE* 3.1 29.0 + - + +
74D LEU* 3.7 13.6 + - + +
404D TYR* 4.1 22.2 - - + -
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Residues in contact with VAL 71 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67D MET* 3.5 32.3 - - + +
68D LEU* 3.1 27.1 + - + +
70D VAL* 1.3 77.7 - - - +
72D LYS* 1.3 54.9 + - - +
74D LEU* 3.1 8.8 + - + +
75D VAL* 2.9 42.2 + - + +
308D THR* 4.6 17.7 - - + -
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Residues in contact with LYS 72 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68D LEU 3.7 6.3 + - - +
69D GLN* 3.1 44.3 + - - +
70D VAL 3.2 0.4 - - - -
71D VAL* 1.3 79.1 - - - +
73D ILE* 1.3 61.2 + - - +
75D VAL* 4.3 3.4 - - - +
76D VAL* 3.0 38.8 + - + +
77D THR* 4.9 0.2 + - - -
308D THR* 5.2 9.8 + - - +
309D CYS* 4.5 16.2 - - - +
312D SER* 3.4 24.7 + - - -
358D LEU* 3.8 10.5 + - - +
361D SER* 4.2 4.6 + - - -
362D ASP* 2.7 40.7 + - - +
397D VAL* 4.7 18.0 - - + +
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Residues in contact with ILE 73 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69D GLN* 3.9 14.4 - - + +
70D VAL* 3.1 23.5 + - + +
72D LYS* 1.3 75.2 - - - +
74D LEU* 1.3 65.5 + - + +
77D THR* 3.0 27.5 + - - -
397D VAL* 3.7 28.7 - - + +
398D TRP* 4.1 34.1 - - + +
400D GLY 6.1 0.2 - - - -
401D VAL* 3.9 26.0 - - + -
404D TYR* 6.0 4.3 - - + -
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Residues in contact with LEU 74 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70D VAL* 3.7 17.5 + - + +
71D VAL* 3.1 10.1 + - + +
73D ILE* 1.3 87.5 - - + +
75D VAL* 1.3 68.6 + - + +
77D THR* 4.0 0.7 - - - -
78D VAL* 3.1 34.1 + - + +
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Residues in contact with VAL 75 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71D VAL* 2.9 37.4 + - + +
72D LYS* 4.6 2.5 - - - +
74D LEU* 1.3 81.4 - - + +
76D VAL* 1.3 59.9 + - + +
78D VAL* 3.4 2.1 + - - +
79D GLN* 2.8 27.9 + - - +
301D PHE* 4.0 22.0 - - + -
304D VAL* 4.5 14.8 - - + -
305D VAL* 3.7 33.9 - - + +
308D THR* 4.5 7.4 - - - +
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Residues in contact with VAL 76 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72D LYS* 3.0 27.1 + - + +
75D VAL* 1.3 77.3 - - + +
77D THR* 1.3 53.4 + - - +
79D GLN* 3.2 11.1 + - + +
80D LEU* 2.7 33.9 + - + +
305D VAL* 4.7 4.9 - - + -
308D THR* 5.9 0.2 - - - +
309D CYS* 4.0 26.9 - - - -
365D THR* 4.3 16.6 - - + +
390D LEU* 5.4 3.6 - - + +
393D SER* 4.4 10.1 - - - +
394D THR* 3.7 23.8 - - + +
397D VAL* 5.0 12.6 - - + -
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Residues in contact with THR 77 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441C PHE* 4.3 22.2 - - + -
72D LYS 4.9 0.2 + - - -
73D ILE* 3.0 23.1 + - - -
74D LEU* 3.6 1.9 + - - -
75D VAL 3.4 0.4 - - - -
76D VAL* 1.3 78.3 - - - +
78D VAL* 1.3 54.1 + - + +
80D LEU* 3.0 8.9 + - + +
81D ILE* 2.7 56.6 + - + +
394D THR* 4.4 4.4 - - + +
397D VAL* 6.1 0.3 - - - +
398D TRP* 3.1 26.8 + - + +
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Residues in contact with VAL 78 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74D LEU* 3.1 23.8 + - + +
75D VAL* 4.0 3.4 - - - +
77D THR* 1.3 74.7 - - + +
79D GLN* 1.3 65.2 + - - +
81D ILE* 4.3 8.7 - - + +
82D LEU* 3.2 40.5 + - + +
301D PHE* 4.2 20.5 - - + -
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Residues in contact with GLN 79 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75D VAL 2.8 18.5 + - - +
76D VAL* 3.3 9.6 - - + +
78D VAL* 1.3 77.6 - - - +
80D LEU* 1.3 60.2 + - - +
82D LEU* 4.3 0.7 - - - -
83D PHE* 3.3 18.2 + - - +
301D PHE* 3.9 17.6 - - + +
302D ASP* 3.9 17.2 + - - +
305D VAL* 3.9 15.6 - - + +
369D THR* 3.9 26.9 - - + +
372D LYS* 3.4 43.7 + - - +
390D LEU* 4.9 9.6 - - + +
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Residues in contact with LEU 80 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C PHE* 3.7 37.7 - - + +
444C TRP* 4.8 1.1 - - + -
445C ILE* 3.6 32.9 - - + +
76D VAL 2.7 16.5 + - - +
77D THR* 3.0 9.8 + - - +
79D GLN* 1.3 74.4 - - - +
81D ILE* 1.3 72.7 + - + +
83D PHE* 3.1 8.9 + - + +
84D GLY* 3.0 19.1 + - - -
390D LEU* 4.0 19.5 - - + +
391D GLY* 4.5 5.8 - - - -
394D THR* 3.3 33.0 - - + +
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Residues in contact with ILE 81 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441C PHE* 3.9 19.7 - - + -
444C TRP* 4.3 14.2 - - + -
457C LEU* 5.8 3.4 - - + -
77D THR* 2.7 38.7 + - + +
78D VAL* 3.5 7.2 + - + +
80D LEU* 1.3 85.6 - - + +
82D LEU* 1.3 68.1 + - + +
84D GLY* 3.1 14.9 + - - -
85D LEU* 3.2 31.1 + - + +
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Residues in contact with LEU 82 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78D VAL* 3.2 33.2 + - + +
79D GLN 4.3 0.9 - - - -
81D ILE* 1.3 88.5 - - + +
83D PHE* 1.3 59.2 + - - +
85D LEU* 4.4 11.9 - - + +
86D SER* 3.6 16.3 + - - -
298D ARG* 4.8 23.3 + - + -
372D LYS* 5.8 1.1 + - - -
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Residues in contact with PHE 83 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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445C ILE* 4.5 22.9 - - + -
79D GLN* 3.3 21.1 + - - +
80D LEU* 3.1 7.8 + - + +
81D ILE 3.1 0.6 - - - -
82D LEU* 1.3 79.1 - - - +
84D GLY* 1.3 65.2 + - - +
85D LEU 3.4 0.2 - - - -
86D SER* 3.1 20.8 + - - -
87D ASN* 3.2 35.7 + - + +
372D LYS* 3.8 42.4 - - + +
375D ILE* 5.0 15.3 - - + -
383D TYR* 5.2 7.0 - + - -
386D CYS* 4.3 21.3 - - - -
387D SER* 4.9 6.5 - - - -
390D LEU* 4.3 20.9 - - + -
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Residues in contact with GLY 84 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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444C TRP* 4.2 19.5 - - - -
445C ILE* 4.6 11.9 - - - -
80D LEU 3.0 12.2 + - - -
81D ILE 3.1 3.5 + - - -
83D PHE* 1.3 79.4 - - - +
85D LEU* 1.3 52.0 + - - +
87D ASN* 3.1 5.4 + - - +
88D GLN* 2.7 38.1 + - - +
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Residues in contact with LEU 85 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444C TRP* 4.2 14.1 - - + -
81D ILE* 3.2 28.6 + - + +
82D LEU* 5.0 9.4 - - + -
84D GLY* 1.3 76.6 - - - +
86D SER* 1.3 61.6 + - - +
88D GLN* 3.8 20.9 - - - +
89D LEU* 3.5 24.4 + - - +
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Residues in contact with SER 86 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82D LEU 3.6 12.9 + - - -
83D PHE* 3.1 19.8 + - - -
85D LEU* 1.3 78.1 - - - +
87D ASN* 1.3 60.8 + - - +
89D LEU* 4.2 4.1 + - - +
90D ALA* 4.0 15.9 + - - +
298D ARG* 3.9 23.9 + - - -
375D ILE* 5.3 7.6 - - - +
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Residues in contact with ASN 87 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445C ILE* 5.5 4.8 + - - +
449C PRO* 4.5 15.7 - - - +
83D PHE* 3.2 39.1 + - + +
84D GLY* 3.1 6.8 + - - +
86D SER* 1.3 81.3 + - - +
88D GLN* 1.3 64.2 + - - +
89D LEU 3.3 0.2 - - - -
90D ALA* 3.4 8.0 + - - +
91D VAL* 3.3 28.9 + - - +
94D ARG* 5.6 0.5 + - - -
383D TYR* 4.4 33.8 + - - +
387D SER* 5.9 2.4 - - - -
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Residues in contact with GLN 88 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444C TRP* 3.8 14.0 - - + +
455C ARG* 3.6 47.3 + - - +
456C SER* 4.8 8.9 - - - -
84D GLY 2.7 18.8 + - - +
85D LEU* 3.8 24.4 - - - +
86D SER 3.6 0.2 - - - -
87D ASN* 1.3 73.2 - - - +
89D LEU* 1.3 58.7 + - - +
91D VAL* 3.0 21.8 + - - +
92D THR* 3.3 20.4 + - + +
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Residues in contact with LEU 89 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85D LEU 3.5 15.0 + - - +
86D SER* 4.6 4.7 - - - +
87D ASN 3.3 0.6 - - - -
88D GLN* 1.3 80.6 - - - +
90D ALA* 1.3 58.5 + - - +
92D THR* 3.2 24.6 + - + +
93D PHE* 3.7 9.4 + - - +
241D ASN* 5.7 0.5 + - - -
243D GLN* 3.6 32.4 - - + +
246D ILE* 4.5 22.0 - - + -
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Residues in contact with ALA 90 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86D SER 4.0 10.6 + - - +
87D ASN* 3.4 12.8 + - - +
88D GLN 3.2 0.8 - - - -
89D LEU* 1.3 78.8 - - - +
91D VAL* 1.3 63.0 + - + +
93D PHE* 3.6 6.0 + - - +
94D ARG* 3.2 30.4 + - - +
241D ASN* 5.9 1.3 - - - +
252D ASP* 5.7 2.5 - - - +
254D TYR* 3.8 23.8 + - + +
281D ILE* 5.7 3.8 - - + -
383D TYR* 6.3 2.5 - - + -
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Residues in contact with VAL 91 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449C PRO* 3.5 51.1 - - + +
455C ARG* 4.8 7.4 - - - +
87D ASN* 3.3 23.6 - - - +
88D GLN* 3.0 11.3 + - + +
90D ALA* 1.3 76.3 - - - +
92D THR* 1.3 61.7 + - + +
94D ARG* 2.8 25.8 + - + +
95D GLU* 2.7 42.3 + - + +
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Residues in contact with THR 92 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455C ARG* 3.7 24.5 - - + +
88D GLN* 3.5 22.0 - - + +
89D LEU* 3.2 21.9 + - + +
91D VAL* 1.3 75.5 - - - +
93D PHE* 1.3 62.7 + - - +
95D GLU* 3.9 10.0 - - - +
96D GLU* 3.2 34.1 + - - +
243D GLN* 5.4 2.9 + - - -
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Residues in contact with PHE 93 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266C ALA* 3.8 27.6 - - + -
267C HIS 4.2 11.9 - - - -
268C SER* 4.3 8.7 - - - -
89D LEU 3.7 9.7 + - - +
90D ALA* 3.6 9.7 + - - +
91D VAL 3.2 0.4 - - - -
92D THR* 1.3 82.7 + - - +
94D ARG* 1.3 61.9 + - - +
96D GLU* 4.7 1.5 - - - +
97D ASN* 2.9 52.0 + - - +
147D TYR* 6.3 0.2 - + - -
239D THR* 4.3 15.5 - - + -
240D ILE 4.9 1.3 - - - -
241D ASN* 4.1 28.7 - - - +
242D LEU 5.6 0.2 - - - -
243D GLN* 5.2 6.5 - - - +
254D TYR* 3.5 44.0 - + - +
256D PHE* 3.9 11.9 - + - -
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Residues in contact with ARG 94 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449C PRO* 5.7 1.2 - - - +
87D ASN* 5.6 0.6 + - - -
90D ALA* 3.2 15.6 + - - +
91D VAL* 2.8 39.0 + - - +
93D PHE* 1.3 81.4 - - + +
95D GLU* 1.3 57.3 + - + +
96D GLU 3.2 4.5 + - - -
97D ASN* 3.7 5.2 + - - +
98D THR* 3.3 22.8 + - + +
254D TYR* 5.3 2.7 - - + -
256D PHE* 4.7 11.0 - - + -
277D THR* 4.7 14.6 - - - +
278D GLN* 5.9 0.4 - - - +
279D ALA* 3.6 39.6 + - + +
281D ILE* 4.2 18.6 - - - +
383D TYR* 4.7 18.5 - - - -
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Residues in contact with GLU 95 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449C PRO 4.3 7.8 - - - +
450C TYR 5.8 0.7 - - - -
451C HIS 5.7 0.2 - - - -
452C VAL* 5.7 2.2 - - - +
455C ARG* 2.6 45.3 + - - -
91D VAL* 2.7 28.2 + - + +
92D THR* 3.9 10.6 - - - +
94D ARG* 1.3 73.6 - - + +
96D GLU* 1.3 59.1 + - + +
98D THR* 3.6 12.2 + - - -
99D ILE* 3.3 21.1 - - - +
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Residues in contact with GLU 96 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266C ALA* 4.4 13.0 - - - +
268C SER* 3.7 25.0 + - - +
270C ARG* 2.8 48.9 + - - +
272C PRO* 5.1 2.3 - - - +
92D THR* 3.2 22.2 + - - +
93D PHE 4.7 0.2 - - - +
94D ARG 3.2 0.8 - - - -
95D GLU* 1.3 81.0 - - + +
97D ASN* 1.3 61.5 + - - +
98D THR 3.3 1.3 - - - -
99D ILE* 3.7 6.3 + - + +
100D ALA* 3.1 23.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 97 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267C HIS 4.9 0.4 + - - -
268C SER* 2.6 38.8 + - - +
93D PHE* 2.9 44.5 + - - +
94D ARG 3.7 1.1 + - - +
96D GLU* 1.3 77.4 - - - +
98D THR* 1.3 59.0 + - - +
100D ALA* 3.4 3.6 - - - +
101D PHE* 2.9 36.7 + - + -
147D TYR* 2.7 22.9 + - - +
256D PHE* 3.3 30.1 - - + -
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Residues in contact with THR 98 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94D ARG* 3.3 17.0 - - + +
95D GLU* 3.6 15.3 + - - -
97D ASN* 1.3 75.3 - - + +
99D ILE* 1.3 74.7 + - - +
101D PHE* 2.8 23.8 + - - +
102D ARG* 2.9 33.1 + - - +
256D PHE* 5.7 1.1 - - + -
275D LEU* 4.8 7.9 - - + -
277D THR* 3.3 38.6 - - + +
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Residues in contact with ILE 99 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120C TYR* 4.1 16.6 - - - +
270C ARG* 4.3 14.6 - - - +
95D GLU 3.3 21.3 - - - +
96D GLU* 3.7 10.1 + - + +
97D ASN 3.4 0.2 - - - -
98D THR* 1.3 88.0 + - - +
100D ALA* 1.3 62.6 + - - +
102D ARG* 3.7 25.8 + - - +
103D HIS* 3.1 37.6 + - + +
109D TYR* 5.4 4.5 - - + +
111D ASP* 5.2 3.4 - - - +
114D ASP* 6.1 0.2 - - - +
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Residues in contact with ALA 100 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120C TYR* 4.1 11.4 - - + -
268C SER 3.8 10.1 - - - +
269C GLY* 3.3 27.1 - - - +
270C ARG* 4.6 2.2 - - + +
96D GLU 3.1 15.1 + - - +
97D ASN* 3.4 10.1 - - - +
98D THR 3.1 0.2 - - - -
99D ILE* 1.3 77.7 - - - +
101D PHE* 1.3 66.0 + - + +
103D HIS* 3.4 10.9 + - - +
104D LEU* 3.4 22.8 + - + +
147D TYR* 4.6 2.9 - - + +
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Residues in contact with PHE 101 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97D ASN* 2.9 24.3 + - + -
98D THR* 2.8 12.7 + - - +
100D ALA* 1.3 80.1 - - + +
102D ARG* 1.3 57.4 - - - +
104D LEU* 3.1 9.0 + - + +
105D PHE* 2.9 55.8 + + + +
139D LEU* 6.2 1.1 - - + -
147D TYR* 3.7 45.3 - + - -
237D LEU* 4.1 19.5 - - + -
256D PHE* 4.4 21.5 - + + -
258D VAL* 4.2 25.8 - - + -
275D LEU* 4.4 11.4 - - + -
277D THR* 4.4 9.2 - - + -
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Residues in contact with ARG 102 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486C ARG* 5.2 8.9 - - - +
98D THR* 2.9 30.0 + - - +
99D ILE* 4.3 24.1 - - - +
100D ALA 3.3 0.4 - - - -
101D PHE* 1.3 77.2 - - - +
103D HIS* 1.3 59.5 + - - +
104D LEU 3.1 1.1 + - - -
106D LEU* 3.5 44.1 + - + +
109D TYR* 3.7 36.1 + - + +
114D ASP* 2.9 33.7 + - - +
275D LEU* 3.9 44.0 + - + +
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Residues in contact with HIS 103 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120C TYR* 3.3 56.5 + + + +
121C THR* 5.5 1.6 - - - +
99D ILE* 3.1 24.9 - - + +
100D ALA 3.4 3.0 + - - +
101D PHE 3.2 0.8 - - - -
102D ARG* 1.3 76.6 - - - +
104D LEU* 1.3 66.4 + - - +
106D LEU 5.2 2.7 - - - -
109D TYR* 3.6 34.4 + + - -
110D SER* 4.7 1.3 - - - -
111D ASP* 2.7 35.5 + - - -
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Residues in contact with LEU 104 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120C TYR* 4.6 15.0 - - + +
121C THR* 4.2 23.3 - - + -
269C GLY 5.7 1.8 - - - +
100D ALA* 3.4 20.4 - - + +
101D PHE* 3.1 18.2 + - + +
103D HIS* 1.3 86.8 - - - +
105D PHE* 1.3 71.7 + - + +
106D LEU 3.7 1.6 - - - -
131D HIS* 4.2 6.7 + - - -
135D GLN* 3.3 42.8 + - + +
139D LEU* 4.7 9.4 - - + -
142D VAL* 5.5 1.3 - - + -
143D SER* 3.6 32.3 - - - +
147D TYR* 5.7 2.2 - - + -
----------------------------------------------------------
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Residues in contact with PHE 105 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101D PHE* 2.9 49.9 + + + +
104D LEU* 1.3 93.5 - - + +
106D LEU* 1.3 68.4 + - - +
107D LEU 4.3 0.5 + - - -
128D ALA 4.9 1.9 - - - +
131D HIS* 4.6 6.0 - - - -
132D ALA* 3.7 33.9 + - + +
135D GLN* 4.0 23.6 - - + -
136D TYR* 4.2 14.4 - + - -
139D LEU* 4.5 17.5 - - + -
235D PHE* 3.4 37.2 - + - -
237D LEU* 5.1 4.0 - - + -
258D VAL* 5.0 1.3 - - + -
260D ILE* 3.9 20.0 - - + +
275D LEU* 4.6 6.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 106 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102D ARG* 3.5 45.7 + - + +
103D HIS* 5.3 2.3 - - - -
104D LEU 3.7 1.1 - - - -
105D PHE* 1.3 88.5 - - + +
107D LEU* 1.3 65.9 + - - +
108D GLY 3.1 4.2 + - - -
109D TYR* 3.6 28.4 + - + -
117D PHE* 4.4 9.9 - - + -
128D ALA 6.0 0.2 - - - -
131D HIS* 4.3 4.5 + - - -
260D ILE* 4.4 15.3 - - + -
262D PHE* 5.8 1.8 - - + -
273D ILE* 3.7 31.4 - - + +
274D SER 4.6 4.9 - - - +
275D LEU* 4.6 14.4 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il