Contacts of the helix formed by residues 70 - 133 (chain G) in PDB entry 6FF7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 70 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66G PRO* 3.8 24.2 - - - -
69G THR* 1.3 82.1 - - - +
71G ILE* 1.3 64.5 + - - +
72G PRO* 3.5 4.5 - - - -
73G ALA* 3.4 22.2 + - - +
74G ILE* 3.1 21.5 + - - +
62I ARG* 5.3 3.1 - - - -
63I PRO 4.4 8.3 - - - -
64I LYS* 5.9 1.5 - - - +
77I ALA* 5.1 5.3 - - - +
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Residues in contact with ILE 71 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G SER* 1.3 70.0 - - - +
72G PRO* 1.3 66.8 - - - +
74G ILE* 3.1 7.4 + - - +
75G LEU* 2.9 24.1 + - - +
9I ASN* 3.2 29.3 - - + +
10I GLU* 5.8 0.2 - - + -
77I ALA* 6.1 1.6 - - - -
75J LEU* 6.1 4.9 - - + -
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Residues in contact with PRO 72 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G SER* 3.5 2.6 - - - -
71G ILE* 1.3 77.4 - - - +
73G ALA* 1.3 57.4 + - - +
75G LEU* 3.9 3.3 - - + +
76G LYS* 2.9 33.4 + - - +
3I LEU* 3.3 30.4 - - + +
4I ILE* 3.7 20.9 - - + -
9I ASN* 3.3 9.8 - - + +
62I ARG* 4.7 11.7 - - + -
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Residues in contact with ALA 73 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G SER* 3.4 17.9 + - - +
71G ILE 3.2 0.6 - - - -
72G PRO* 1.3 79.3 - - - +
74G ILE* 1.3 50.8 + - - +
76G LYS* 5.0 2.0 - - - -
77G ALA* 2.6 42.4 + - + +
62I ARG* 5.9 1.0 - - - +
63I PRO 4.2 7.0 - - - +
64I LYS* 3.7 30.7 - - + -
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Residues in contact with ILE 74 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G SER 3.1 12.5 + - - +
71G ILE* 3.1 11.3 + - - +
73G ALA* 1.3 76.1 - - - +
75G LEU* 1.3 59.3 + - - +
77G ALA* 4.5 2.5 - - - -
78G LEU* 2.9 32.7 + - - +
73I ALA* 4.3 26.0 - - + -
77I ALA* 5.5 4.5 - - + -
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Residues in contact with LEU 75 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71G ILE 2.9 14.6 + - - +
72G PRO* 3.9 6.1 - - + +
74G ILE* 1.3 78.8 - - - +
76G LYS* 1.3 58.3 + - - +
78G LEU* 3.9 2.2 - - - +
79G GLN* 2.9 32.3 + - - +
3I LEU* 5.4 3.4 - - + +
10I GLU* 4.7 17.9 - - + -
11I VAL* 4.9 9.4 - - + +
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Residues in contact with LYS 76 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72G PRO 2.9 17.5 + - - +
73G ALA* 4.7 1.8 - - - +
75G LEU* 1.3 76.5 - - - +
77G ALA* 1.3 57.6 + - - +
79G GLN* 4.3 3.5 - - - +
80G ASP* 2.9 32.6 + - - +
28H ARG* 5.8 0.6 - - - +
3I LEU* 4.8 16.3 - - + +
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Residues in contact with ALA 77 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73G ALA* 2.6 24.7 + - + +
74G ILE* 4.3 2.5 - - - +
76G LYS* 1.3 77.3 - - - +
78G LEU* 1.3 58.5 + - - +
80G ASP* 4.1 3.5 - - - +
81G GLU* 2.9 30.5 + - - +
68I ALA* 5.2 15.0 - - + -
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Residues in contact with LEU 78 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74G ILE 2.9 22.4 + - - +
75G LEU* 3.9 2.7 - - - +
77G ALA* 1.3 75.5 - - - +
79G GLN* 1.3 59.5 + - - +
81G GLU* 3.4 4.8 + - - +
82G TRP* 2.9 31.2 + - - +
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Residues in contact with GLN 79 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75G LEU 2.9 18.1 + - - +
76G LYS* 4.3 3.4 - - - +
78G LEU* 1.3 76.5 - - - +
80G ASP* 1.3 58.2 + - - +
82G TRP* 3.8 5.1 - - - +
83G ASP* 2.9 27.9 + - - +
28H ARG* 3.6 26.1 - - + +
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Residues in contact with ASP 80 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76G LYS 2.9 22.2 + - - +
77G ALA* 4.1 4.5 - - - +
79G GLN* 1.3 76.0 - - - +
81G GLU* 1.3 60.2 + - - +
83G ASP* 3.2 7.3 + - - +
84G ALA* 2.9 30.3 + - - +
28H ARG* 4.7 5.3 - - + +
32H LYS* 5.1 14.1 - - + -
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Residues in contact with GLU 81 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77G ALA 2.9 21.6 + - - +
78G LEU* 3.8 5.8 - - - +
80G ASP* 1.3 78.3 - - - +
82G TRP* 1.3 56.7 + - - +
84G ALA* 4.0 3.2 - - - +
85G VAL* 2.9 33.1 + - - +
83H ASP* 5.9 1.3 - - - -
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Residues in contact with TRP 82 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78G LEU 2.9 17.4 + - - +
79G GLN* 4.0 6.3 - - - +
81G GLU* 1.3 77.4 - - - +
83G ASP* 1.3 51.3 + - - +
85G VAL* 4.7 2.7 - - - -
86G MET* 2.6 41.4 + - + +
7H ILE 3.6 0.8 - - - +
8H SER* 3.8 12.5 - - - +
10H GLU* 5.0 11.9 - - + -
83H ASP* 5.1 14.5 - - + +
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Residues in contact with ASP 83 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79G GLN 2.9 18.9 + - - +
80G ASP* 3.2 10.1 + - - +
82G TRP* 1.3 77.2 - - - +
84G ALA* 1.3 59.1 + - - +
87G LEU* 2.9 30.1 + - - +
7H ILE* 3.3 13.4 - - - +
8H SER* 5.0 1.1 - - - +
26H GLU* 6.1 0.2 - - + -
28H ARG 4.6 1.1 - - - +
29H LEU* 3.7 34.9 - - + +
32H LYS* 6.2 1.6 - - + -
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Residues in contact with ALA 84 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80G ASP 2.9 15.8 + - - +
81G GLU* 4.1 3.6 - - - +
83G ASP* 1.3 74.8 - - - +
85G VAL* 1.3 60.9 + - - +
87G LEU* 3.2 6.1 + - - +
88G HIS* 2.9 28.4 + - - +
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Residues in contact with VAL 85 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81G GLU 2.9 18.8 + - - +
82G TRP* 4.7 2.7 - - - +
84G ALA* 1.3 76.7 - - - +
86G MET* 1.3 58.5 + - - +
88G HIS* 3.3 7.9 + - - +
89G SER* 2.9 26.3 + - - -
83H ASP* 4.7 21.1 - - + +
86H MET* 5.4 3.3 - - + +
87H LEU* 5.1 13.2 - - + -
90H PHE* 5.5 1.0 - - - +
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Residues in contact with MET 86 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82G TRP* 2.6 24.3 + - - +
85G VAL* 1.3 75.0 - - - +
87G LEU* 1.3 58.9 + - - +
89G SER* 3.2 9.7 + - - -
90G PHE 2.9 17.0 + - - -
6H SER 2.9 19.5 - - - +
7H ILE 3.3 13.7 - - - +
8H SER 3.2 24.5 - - - +
9H ASN* 4.6 4.7 - - + -
86H MET* 5.6 4.9 - - + -
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Residues in contact with LEU 87 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83G ASP 2.9 21.9 + - - +
84G ALA* 3.2 7.2 + - - +
86G MET* 1.3 74.8 - - - +
88G HIS* 1.3 59.4 + - - +
90G PHE* 3.1 6.0 + - - +
91G THR* 2.9 27.5 + - - -
7H ILE* 4.0 16.3 + - + +
41H PRO* 6.5 0.4 - - + -
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Residues in contact with HIS 88 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84G ALA 2.9 13.7 + - - +
85G VAL* 3.3 11.2 + - - +
87G LEU* 1.3 75.3 - - - +
89G SER* 1.3 57.8 + - - +
91G THR* 3.4 7.5 + - - +
92G LEU* 2.9 29.3 + - - +
90H PHE* 4.2 6.3 - - + +
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Residues in contact with SER 89 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85G VAL 2.9 13.8 + - - -
86G MET* 3.5 13.0 - - - -
87G LEU 3.2 0.2 - - - -
88G HIS* 1.3 75.6 - - - +
90G PHE* 1.3 59.3 + - - +
92G LEU* 3.8 1.4 - - - +
93G ARG* 2.9 27.5 + - - +
6H SER 5.4 0.2 - - - -
86H MET* 4.0 27.8 - - - -
90H PHE* 3.7 13.2 - - - +
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Residues in contact with PHE 90 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86G MET 2.9 6.6 + - - +
87G LEU* 3.1 10.7 + - - +
89G SER* 1.3 74.6 - - - +
91G THR* 1.3 59.3 + - - +
93G ARG* 3.2 7.6 + - - +
94G GLN* 2.9 28.8 + - - +
6H SER* 3.3 39.0 - - - +
7H ILE* 5.0 0.9 - - + -
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Residues in contact with THR 91 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87G LEU 2.9 14.9 + - - -
88G HIS* 3.4 7.6 + - - -
90G PHE* 1.3 78.3 - - - +
92G LEU* 1.3 56.5 + - - +
94G GLN* 3.3 6.5 + - - +
95G GLN* 2.9 30.4 + - - +
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Residues in contact with LEU 92 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88G HIS 2.9 18.0 + - - +
89G SER 3.9 1.6 - - - +
91G THR* 1.3 76.9 - - - +
93G ARG* 1.3 58.7 + - - +
95G GLN* 4.2 5.7 - - - +
96G LEU* 2.9 30.5 + - - +
90H PHE* 3.4 39.0 - - + +
93H ARG* 3.9 8.0 - - + +
94H GLN* 4.6 9.4 - - + +
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Residues in contact with ARG 93 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89G SER 2.9 18.8 + - - +
90G PHE* 3.2 8.5 + - - +
92G LEU* 1.3 76.9 - - - +
94G GLN* 1.3 59.5 + - - +
96G LEU* 3.8 5.1 - - - +
97G GLN* 2.9 28.9 + - - +
93H ARG* 5.4 1.8 - - - -
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Residues in contact with GLN 94 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90G PHE 2.9 14.7 + - - +
91G THR* 3.3 6.0 + - - +
93G ARG* 1.3 74.6 - - - +
95G GLN* 1.3 59.8 + - - +
97G GLN* 3.2 5.9 + - - +
98G THR* 2.9 30.0 + - - -
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Residues in contact with GLN 95 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91G THR 2.9 17.0 + - - +
92G LEU* 4.2 6.1 - - - +
94G GLN* 1.3 76.5 - - - +
96G LEU* 1.3 58.0 + - - +
98G THR* 4.1 4.8 - - - -
99G THR* 2.9 31.4 + - - -
94H GLN* 6.1 2.7 - - + -
97H GLN* 3.9 9.7 - - + +
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Residues in contact with LEU 96 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92G LEU 2.9 21.0 + - - +
93G ARG* 3.9 5.2 - - - +
95G GLN* 1.3 76.1 - - - +
97G GLN* 1.3 58.3 + - - +
99G THR* 3.8 0.7 - - - -
100G ARG* 2.9 29.3 + - - +
93H ARG* 3.9 26.9 - - + +
96H LEU* 6.3 0.4 - - + -
97H GLN* 4.1 10.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 97 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93G ARG 2.9 18.4 + - - +
94G GLN* 3.2 6.7 + - - +
96G LEU* 1.3 76.0 - - - +
98G THR* 1.3 59.6 + - - +
100G ARG* 3.2 5.8 + - - +
101G GLN* 2.9 29.6 + - - +
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Residues in contact with THR 98 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94G GLN 2.9 16.6 + - - -
95G GLN* 4.1 5.2 - - - -
97G GLN* 1.3 75.7 - - - +
99G THR* 1.3 58.7 + - - +
101G GLN* 3.4 5.7 + - - +
102G GLU* 2.9 30.2 + - - +
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Residues in contact with THR 99 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95G GLN 2.9 19.9 + - - -
96G LEU 4.2 1.6 - - - -
98G THR* 1.3 76.3 - - - +
100G ARG* 1.3 58.4 + - - +
102G GLU* 4.1 6.1 - - - +
103G LEU* 2.9 28.8 + - - +
97H GLN* 3.7 36.3 - - - -
100H ARG* 3.6 10.1 - - - +
101H GLN* 5.0 5.4 - - - +
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Residues in contact with ARG 100 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96G LEU 2.9 21.7 + - - +
97G GLN* 3.2 8.2 + - - +
99G THR* 1.3 75.7 - - - +
101G GLN* 1.3 60.4 + - - +
103G LEU* 3.3 6.3 + - - +
104G SER* 2.9 28.1 + - - -
100H ARG* 5.4 0.9 - - - -
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Residues in contact with GLN 101 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97G GLN 2.9 16.3 + - - +
98G THR* 3.9 5.8 - - - +
100G ARG* 1.3 75.3 - - - +
102G GLU* 1.3 58.9 + - - +
104G SER* 3.3 5.6 + - - -
105G HIS* 2.9 30.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 102 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98G THR 2.9 18.5 + - - +
99G THR* 4.1 6.7 - - - +
101G GLN* 1.3 76.9 - - - +
103G LEU* 1.3 58.0 + - - +
105G HIS* 4.3 4.8 - - - +
106G ALA* 2.9 30.7 + - - +
100H ARG 6.6 0.2 - - - -
101H GLN* 6.5 0.9 - - - -
104H SER* 4.3 11.5 - - - -
----------------------------------------------------------
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Residues in contact with LEU 103 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G THR 2.9 21.2 + - - +
100G ARG* 3.6 7.9 - - - +
101G GLN 3.2 0.4 - - - -
102G GLU* 1.3 76.9 - - - +
104G SER* 1.3 58.6 + - - +
106G ALA* 3.8 5.1 - - - +
107G LEU* 2.9 28.1 + - - +
100H ARG* 3.7 25.8 + - + +
103H LEU* 6.5 0.4 - - + -
----------------------------------------------------------
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Residues in contact with SER 104 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100G ARG 2.9 16.9 + - - -
101G GLN* 3.3 6.7 + - - -
103G LEU* 1.3 75.5 - - - +
105G HIS* 1.3 59.4 + - - +
107G LEU* 3.1 6.5 + - - +
108G TYR* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 105 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101G GLN 2.9 17.0 + - - +
102G GLU* 4.3 4.5 - - - +
104G SER* 1.3 76.7 - - - +
106G ALA* 1.3 57.0 + - - +
108G TYR* 3.5 6.4 + - - +
109G GLN* 2.9 29.9 + - - +
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Residues in contact with ALA 106 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102G GLU 2.9 22.5 + - - +
103G LEU* 3.9 4.9 - - - +
105G HIS* 1.3 75.2 - - - +
107G LEU* 1.3 59.2 + - - +
109G GLN* 3.8 6.0 - - - +
110G HIS* 2.9 28.2 + - - +
103H LEU 5.4 0.4 - - - -
104H SER* 3.8 30.5 - - - +
107H LEU* 4.4 10.2 - - + +
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Residues in contact with LEU 107 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G LEU 2.9 19.0 + - - +
104G SER* 3.1 7.8 + - - +
106G ALA* 1.3 75.5 - - - +
108G TYR* 1.3 59.8 + - - +
110G HIS* 3.2 7.0 + - - +
111G ASP* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with TYR 108 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104G SER 2.9 15.5 + - - +
105G HIS* 3.9 6.5 - - - +
107G LEU* 1.3 75.9 - - - +
109G GLN* 1.3 58.7 + - - +
111G ASP* 3.3 6.5 + - - +
112G ALA* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 109 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105G HIS 2.9 19.2 + - - +
106G ALA* 4.0 6.5 - - - +
108G TYR* 1.3 77.5 - - - +
110G HIS* 1.3 56.7 + - - +
112G ALA* 4.5 4.7 - - - +
113G ALA* 2.8 33.7 + - + +
107H LEU* 6.2 0.2 - - - -
111H ASP* 5.8 0.2 - - - +
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Residues in contact with HIS 110 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106G ALA 2.9 19.5 + - - +
107G LEU* 3.2 9.1 + - - +
109G GLN* 1.3 76.1 - - - +
111G ASP* 1.3 59.6 + - - +
113G ALA* 4.5 2.7 - - - -
114G CYS* 2.8 31.4 + - - +
107H LEU* 4.6 15.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 111 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107G LEU 2.9 15.4 + - - +
108G TYR* 3.3 6.9 + - - +
110G HIS* 1.3 75.7 - - - +
112G ALA* 1.3 60.8 + - - +
114G CYS* 3.9 3.4 - - - +
115G ARG* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 112 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108G TYR 2.9 17.6 + - - +
109G GLN* 4.4 4.5 - - - +
111G ASP* 1.3 76.5 - - - +
113G ALA* 1.3 58.5 + - - +
115G ARG* 3.9 4.2 - - - +
116G VAL* 2.9 30.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 113 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109G GLN* 2.8 22.4 + - + +
110G HIS* 4.5 2.5 - - - +
112G ALA* 1.3 74.9 - - - +
114G CYS* 1.3 60.0 + - - +
116G VAL* 3.8 5.8 - - - +
117G ILE* 2.9 29.1 + - - +
111H ASP* 4.6 21.8 - - + -
----------------------------------------------------------
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Residues in contact with CYS 114 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110G HIS 2.8 23.5 + - - +
111G ASP* 3.9 4.3 - - - +
113G ALA* 1.3 75.4 - - - +
115G ARG* 1.3 59.7 + - - +
117G ILE* 3.3 5.5 + - - +
118G ALA* 2.9 28.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 115 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111G ASP 2.9 18.9 + - - +
112G ALA* 4.1 4.7 - - - +
114G CYS* 1.3 75.0 - - - +
116G VAL* 1.3 59.1 + - - +
118G ALA* 3.4 7.2 + - - +
119G ARG* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 116 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112G ALA 2.9 20.1 + - - +
113G ALA* 4.0 7.0 - - - +
115G ARG* 1.3 75.8 - - - +
117G ILE* 1.3 58.7 + - - +
119G ARG* 3.5 6.9 + - - +
120G LEU* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 117 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113G ALA 2.9 19.4 + - - +
114G CYS* 3.7 7.0 - - - +
115G ARG 3.3 0.2 - - - -
116G VAL* 1.3 75.6 - - - +
118G ALA* 1.3 59.3 + - - +
120G LEU* 3.3 6.5 + - - +
121G THR* 2.9 29.1 + - - -
114H CYS* 5.3 14.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 118 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114G CYS 2.9 17.8 + - - +
115G ARG* 3.8 7.6 - - - +
117G ILE* 1.3 77.7 - - - +
119G ARG* 1.3 56.7 + - - +
121G THR* 3.4 6.1 + - - -
122G LYS* 2.9 28.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 119 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115G ARG 2.9 18.0 + - - +
116G VAL* 3.8 7.4 - - - +
118G ALA* 1.3 76.3 - - - +
120G LEU* 1.3 58.7 + - - +
122G LYS* 3.8 6.0 - - - +
123G GLU* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116G VAL 2.9 19.1 + - - +
117G ILE* 3.7 7.9 - - - +
119G ARG* 1.3 76.6 - - - +
121G THR* 1.3 57.8 + - - +
123G GLU* 3.8 4.8 - - - +
124G VAL* 2.9 29.3 + - - +
118H ALA* 5.7 9.0 - - + -
----------------------------------------------------------
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Residues in contact with THR 121 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117G ILE 2.9 16.7 + - - -
118G ALA* 3.8 6.7 - - - -
120G LEU* 1.3 73.9 - - - +
122G LYS* 1.3 61.7 + - - +
124G VAL* 3.4 6.6 + - - +
125G THR* 2.9 29.6 + - - -
----------------------------------------------------------
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Residues in contact with LYS 122 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118G ALA 2.9 17.6 + - - +
119G ARG* 3.8 7.6 - - - +
121G THR* 1.3 77.8 - - - +
123G GLU* 1.3 57.2 + - - +
125G THR* 3.4 5.5 + - - -
126G ALA* 2.9 30.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119G ARG 2.9 18.3 + - - +
120G LEU* 4.0 5.4 - - - +
122G LYS* 1.3 76.7 - - - +
124G VAL* 1.3 58.2 + - - +
126G ALA* 4.0 5.0 - - - +
127G ALA* 2.9 31.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 124 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120G LEU 2.9 19.4 + - - +
121G THR* 3.8 7.9 - - - +
123G GLU* 1.3 75.2 - - - +
125G THR* 1.3 60.0 + - - +
127G ALA* 3.9 4.3 - - - +
128G ARG* 2.9 31.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 125 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121G THR 2.9 18.0 + - - -
122G LYS* 3.9 5.8 - - - -
124G VAL* 1.3 76.0 - - - +
126G ALA* 1.3 59.0 + - - +
128G ARG* 4.6 3.6 - - - -
129G GLU* 2.9 33.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G LYS 2.9 18.3 + - - +
123G GLU* 4.0 7.0 - - - +
125G THR* 1.3 77.3 - - - +
127G ALA* 1.3 58.4 + - - +
129G GLU* 4.7 2.5 - - - -
130G ALA* 2.9 33.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 127 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123G GLU 2.9 19.0 + - - +
124G VAL* 4.0 4.5 - - - +
126G ALA* 1.3 75.7 - - - +
128G ARG* 1.3 59.8 + - - +
130G ALA* 4.4 2.0 - - - +
131G LEU* 2.9 32.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 128 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124G VAL 2.9 18.6 + - - +
125G THR* 4.2 4.0 - - - +
127G ALA* 1.3 75.0 - - - +
129G GLU* 1.3 60.5 + - - +
131G LEU* 4.1 3.2 - - - +
132G ALA* 2.9 32.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 129 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125G THR 2.9 21.2 + - - +
126G ALA* 4.4 3.1 - - - +
128G ARG* 1.3 75.2 - - - +
130G ALA* 1.3 60.7 + - - +
132G ALA* 3.4 3.6 + - - -
133G THR* 2.9 30.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 130 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126G ALA 2.9 22.2 + - - +
127G ALA* 4.4 2.2 - - - +
129G GLU* 1.3 77.5 - - - +
131G LEU* 1.3 60.9 + - - +
133G THR* 3.6 16.1 + - - -
134G LEU* 4.5 2.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 131 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127G ALA 2.9 22.2 + - - +
128G ARG* 4.1 3.4 - - - +
130G ALA* 1.3 77.4 - - - +
132G ALA* 1.3 60.3 + - - +
133G THR 3.7 0.3 + - - -
134G LEU* 4.2 10.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128G ARG 2.9 20.7 + - - +
129G GLU* 3.6 4.0 - - - +
131G LEU* 1.3 73.4 - - - +
133G THR* 1.3 62.5 + - - +
134G LEU 3.3 7.3 + - - -
----------------------------------------------------------
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Residues in contact with THR 133 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G GLU 2.9 16.6 + - - -
130G ALA* 3.8 11.7 - - - -
131G LEU 3.3 1.4 - - - -
132G ALA* 1.3 79.1 - - - +
134G LEU* 1.3 60.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il