Contacts of the helix formed by residues 71 - 134 (chain H) in PDB entry 6FF7
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 71 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69H THR* 3.3 14.8 - - - +
70H SER* 1.3 78.0 - - - +
72H PRO* 1.3 63.2 - - - +
73H ALA* 3.1 7.8 + - + +
74H ILE* 3.5 19.9 + - + +
75H LEU* 4.4 1.9 + - - +
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Residues in contact with PRO 72 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70H SER 3.8 3.2 - - - -
71H ILE* 1.3 73.4 - - - +
73H ALA* 1.3 57.5 + - - +
74H ILE 3.2 0.8 + - - -
75H LEU* 3.4 6.3 + - + +
76H LYS* 2.9 35.9 + - + +
74I ILE* 5.7 4.0 - - - +
78I LEU* 5.2 14.1 - - + -
74J ILE* 6.3 3.8 - - + -
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Residues in contact with ALA 73 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71H ILE* 3.1 4.9 - - + -
72H PRO* 1.3 78.1 - - - +
74H ILE* 1.3 57.0 + - - +
76H LYS* 4.8 2.0 - - - -
77H ALA* 2.6 40.9 + - + +
74I ILE* 4.9 13.2 - - + +
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Residues in contact with ILE 74 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71H ILE* 3.5 16.1 + - + +
72H PRO 3.2 0.8 - - - -
73H ALA* 1.3 79.9 - - - +
75H LEU* 1.3 50.9 + - - +
77H ALA* 5.0 0.2 - - - -
78H LEU* 2.6 40.4 + - - +
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Residues in contact with LEU 75 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71H ILE 4.4 1.5 + - - +
72H PRO* 3.4 8.7 + - + +
74H ILE* 1.3 77.7 - - - +
76H LYS* 1.3 60.8 + - - +
78H LEU* 3.8 3.0 - - - +
79H GLN* 2.9 31.5 + - - +
69J THR* 3.6 34.8 - - - +
71J ILE* 3.7 26.9 - - + +
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Residues in contact with LYS 76 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72H PRO* 2.9 20.7 + - + +
75H LEU* 1.3 78.0 - - - +
77H ALA* 1.3 58.0 + - - +
79H GLN* 3.3 5.2 + - - +
80H ASP* 2.9 29.1 + - - +
70I SER* 6.4 0.4 - - - -
74I ILE* 4.6 17.9 - - + -
71J ILE* 5.1 4.4 - - + +
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Residues in contact with ALA 77 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73H ALA* 2.6 29.0 + - + +
74H ILE* 5.0 0.2 - - - -
76H LYS* 1.3 78.6 - - - +
78H LEU* 1.3 56.2 + - - +
80H ASP* 3.8 6.8 - - - +
81H GLU* 2.9 29.5 + - - +
70I SER* 6.1 1.6 - - - -
74I ILE* 5.4 5.7 - - + +
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Residues in contact with LEU 78 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74H ILE 2.6 25.3 + - - +
75H LEU* 3.8 4.5 - - - +
77H ALA* 1.3 75.9 - - - +
79H GLN* 1.3 59.3 + - - +
81H GLU* 3.4 7.0 + - - +
82H TRP* 2.9 28.1 + - - +
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Residues in contact with GLN 79 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10H GLU* 5.9 6.5 - - + -
75H LEU 2.9 17.9 + - - +
76H LYS* 3.8 4.7 - - - +
78H LEU* 1.3 74.5 - - - +
80H ASP* 1.3 61.0 + - - +
82H TRP* 3.3 8.3 + - - +
83H ASP* 2.9 27.7 + - - +
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Residues in contact with ASP 80 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76H LYS 2.9 18.1 + - - +
77H ALA* 3.8 7.2 - - - +
79H GLN* 1.3 78.0 - - - +
81H GLU* 1.3 56.9 + - - +
83H ASP* 3.2 7.5 + - - +
84H ALA* 2.9 28.6 + - - +
70I SER* 4.2 25.6 - - - -
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Residues in contact with GLU 81 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77H ALA 2.9 18.5 + - - +
78H LEU* 3.7 7.0 - - - +
80H ASP* 1.3 75.9 - - - +
82H TRP* 1.3 56.6 - - - +
84H ALA* 3.8 6.4 - - - +
85H VAL* 2.9 29.6 + - - +
112K ALA* 6.3 1.3 - - - -
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Residues in contact with TRP 82 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78H LEU 2.9 16.7 + - - +
79H GLN* 3.6 9.4 - - - +
80H ASP 3.3 0.2 - - - -
81H GLU* 1.3 76.6 - - - +
83H ASP* 1.3 57.6 + - - +
85H VAL* 3.8 5.8 - - - +
86H MET* 2.9 28.2 + - - +
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Residues in contact with ASP 83 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81G GLU* 5.7 1.1 - - + +
82G TRP* 5.1 20.6 - - + +
85G VAL* 4.7 14.0 - - + +
79H GLN 2.9 16.5 + - - +
80H ASP* 3.2 8.0 + - - +
82H TRP* 1.3 75.2 - - - +
84H ALA* 1.3 60.4 + - - +
86H MET* 3.2 7.9 + - - +
87H LEU* 2.9 28.1 + - - +
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Residues in contact with ALA 84 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80H ASP 2.9 17.1 + - - +
81H GLU* 3.8 6.7 - - - +
83H ASP* 1.3 74.6 - - - +
85H VAL* 1.3 59.2 + - - +
87H LEU* 3.2 2.4 + - - +
88H HIS* 2.9 30.0 + - - +
111K MET 5.1 0.9 - - - +
112K ALA* 4.1 32.5 - - + +
115K GLU* 3.9 17.6 - - + +
116K HIS* 5.4 2.5 - - + +
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Residues in contact with VAL 85 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81H GLU 2.9 18.4 + - - +
82H TRP* 3.9 7.4 - - - +
84H ALA* 1.3 76.2 - - - +
86H MET* 1.3 57.5 + - - +
88H HIS* 3.9 6.2 - - - +
89H SER* 2.9 30.0 + - - -
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Residues in contact with MET 86 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85G VAL 5.5 3.6 - - - +
86G MET* 5.6 4.5 - - + -
89G SER* 4.0 19.3 - - - -
9H ASN* 5.9 6.7 - - + -
82H TRP 2.9 18.7 + - - +
83H ASP* 3.5 8.7 - - - +
84H ALA 3.2 0.4 - - - -
85H VAL* 1.3 77.6 - - - +
87H LEU* 1.3 57.6 + - - +
89H SER* 3.8 5.8 - - - -
90H PHE* 2.9 27.2 + - - +
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Residues in contact with LEU 87 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85G VAL* 5.1 15.2 - - + +
83H ASP 2.9 12.9 + - - +
84H ALA 3.2 2.0 + - - +
86H MET* 1.3 75.7 - - - +
88H HIS* 1.3 61.5 + - - +
90H PHE* 3.2 7.1 + - - +
91H THR* 2.9 28.8 + - - -
115K GLU* 3.6 27.6 - - + -
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Residues in contact with HIS 88 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84H ALA 2.9 16.7 + - - +
85H VAL* 4.0 6.7 - - - +
87H LEU* 1.3 75.2 - - - +
89H SER* 1.3 58.0 + - - +
91H THR* 3.4 6.2 + - - +
92H LEU* 2.9 29.3 + - - +
111K MET* 4.3 25.8 - - + +
115K GLU* 4.8 2.1 - - + +
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Residues in contact with SER 89 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85H VAL 2.9 19.4 + - - -
86H MET* 3.9 6.5 - - - -
87H LEU 3.3 0.2 - - - -
88H HIS* 1.3 75.9 - - - +
90H PHE* 1.3 58.3 + - - +
92H LEU* 3.8 6.6 - - - +
93H ARG* 2.9 29.3 + - - +
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Residues in contact with PHE 90 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85G VAL 5.5 0.4 - - - +
88G HIS* 4.2 6.1 - - + +
89G SER* 3.7 27.4 - - - +
92G LEU* 3.4 21.5 - - + +
86H MET 2.9 19.8 + - - +
87H LEU* 3.2 8.7 + - - +
89H SER* 1.3 74.5 - - - +
91H THR* 1.3 59.8 + - - +
93H ARG* 3.3 1.6 + - - -
94H GLN* 2.9 24.9 + - - +
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Residues in contact with THR 91 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87H LEU 2.9 16.0 + - - -
88H HIS* 3.4 7.2 + - - -
90H PHE* 1.3 75.7 - - - +
92H LEU* 1.3 58.3 + - - +
94H GLN* 3.3 6.8 + - - +
95H GLN* 2.9 29.5 + - - +
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Residues in contact with LEU 92 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88H HIS 2.9 17.4 + - - +
89H SER* 3.9 7.9 - - - +
91H THR* 1.3 76.1 - - - +
93H ARG* 1.3 57.4 + - - +
95H GLN* 3.9 5.5 - - - +
96H LEU* 2.9 30.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 93 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92G LEU* 3.9 13.0 - - + +
93G ARG* 5.4 1.1 - - - -
96G LEU* 3.9 26.5 - - + +
89H SER 2.9 19.8 + - - +
90H PHE* 3.7 5.2 - - - +
91H THR 3.3 0.2 - - - -
92H LEU* 1.3 77.2 - - - +
94H GLN* 1.3 56.7 + - - +
96H LEU* 3.8 5.4 - - - +
97H GLN* 2.9 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 94 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92G LEU* 4.6 9.2 - - + +
95G GLN* 6.1 1.8 - - + -
90H PHE 2.9 17.1 + - - +
91H THR* 3.7 7.4 - - - +
93H ARG* 1.3 75.5 - - - +
95H GLN* 1.3 60.1 + - - +
97H GLN* 3.3 6.5 + - - +
98H THR* 2.9 28.1 + - - -
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Residues in contact with GLN 95 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91H THR 2.9 17.4 + - - +
92H LEU* 3.9 6.3 - - - +
93H ARG 3.4 0.2 - - - -
94H GLN* 1.3 74.1 - - - +
96H LEU* 1.3 60.5 + - - +
98H THR* 3.2 7.9 + - - -
99H THR* 2.9 27.3 + - - -
----------------------------------------------------------
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Residues in contact with LEU 96 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96G LEU* 6.3 0.7 - - + -
92H LEU 2.9 18.3 + - - +
93H ARG* 4.0 6.1 - - - +
95H GLN* 1.3 76.1 - - - +
97H GLN* 1.3 57.3 + - - +
99H THR* 3.8 7.4 - - - -
100H ARG* 2.9 28.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 97 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95G GLN* 3.9 17.3 - - + +
96G LEU* 4.1 6.7 - - - +
99G THR* 3.7 28.7 - - - -
93H ARG 2.9 19.6 + - - +
94H GLN* 3.5 8.1 - - - +
95H GLN 3.2 0.2 - - - -
96H LEU* 1.3 75.0 - - - +
98H THR* 1.3 60.0 + - - +
100H ARG* 3.4 0.4 + - - -
101H GLN* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 98 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94H GLN 2.9 15.6 + - - -
95H GLN* 3.2 10.3 + - - -
97H GLN* 1.3 75.9 - - - +
99H THR* 1.3 59.0 + - - +
101H GLN* 3.4 6.2 + - - +
102H GLU* 2.9 29.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 99 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95H GLN 2.9 16.6 + - - -
96H LEU* 3.8 7.9 - - - -
97H GLN 3.3 0.2 - - - -
98H THR* 1.3 74.0 - - - +
100H ARG* 1.3 60.2 + - - +
102H GLU* 3.3 6.3 + - - +
103H LEU* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 100 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G THR* 3.6 28.5 - - - +
100G ARG* 5.4 0.4 - - - -
102G GLU* 6.6 0.2 - - - -
103G LEU* 3.7 18.4 - - + +
96H LEU 2.9 18.5 + - - +
97H GLN* 3.7 4.7 - - - +
98H THR 3.3 0.2 - - - -
99H THR* 1.3 77.9 - - - +
101H GLN* 1.3 56.1 + - - +
103H LEU* 3.4 5.8 + - - +
104H SER* 2.9 29.3 + - - -
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Residues in contact with GLN 101 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G THR* 5.0 5.3 - - - +
102G GLU* 6.5 0.9 - - - -
97H GLN 2.9 18.0 + - - +
98H THR* 3.8 7.0 - - - +
100H ARG* 1.3 75.7 - - - +
102H GLU* 1.3 58.6 + - - +
104H SER* 3.8 6.1 - - - -
105H HIS* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 102 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98H THR 2.9 18.8 + - - +
99H THR* 3.7 7.6 - - - +
100H ARG 3.3 0.2 - - - -
101H GLN* 1.3 75.2 - - - +
103H LEU* 1.3 61.3 + - - +
105H HIS* 3.4 6.0 + - - +
106H ALA* 2.9 29.1 + - - +
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Residues in contact with LEU 103 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G LEU* 6.5 0.4 - - + -
106G ALA* 5.4 0.7 - - - -
99H THR 2.9 17.6 + - - +
100H ARG* 3.8 6.3 - - - +
102H GLU* 1.3 75.6 - - - +
104H SER* 1.3 59.8 + - - +
106H ALA* 3.8 5.5 - - - +
107H LEU* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 104 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102G GLU* 4.3 14.8 - - - -
103G LEU* 5.2 0.4 - - - -
106G ALA* 3.8 29.7 - - - +
100H ARG 2.9 17.2 + - - -
101H GLN* 3.8 7.6 - - - -
103H LEU* 1.3 77.0 - - - +
105H HIS* 1.3 57.3 + - - +
107H LEU* 3.8 1.8 - - - +
108H TYR* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 105 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101H GLN 2.9 18.7 + - - +
102H GLU* 3.8 7.0 - - - +
103H LEU 3.3 0.2 - - - -
104H SER* 1.3 74.1 - - - +
106H ALA* 1.3 59.5 + - - +
108H TYR* 3.4 5.9 + - - +
109H GLN* 2.9 31.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 106 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102H GLU 2.9 17.6 + - - +
103H LEU* 3.9 6.3 - - - +
105H HIS* 1.3 76.6 - - - +
107H LEU* 1.3 57.8 + - - +
109H GLN* 4.2 4.8 - - - +
110H HIS* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 107 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106G ALA* 4.4 19.5 - - + +
110G HIS* 4.6 13.9 - - + +
103H LEU 2.9 18.6 + - - +
104H SER* 3.8 6.1 - - - +
106H ALA* 1.3 76.1 - - - +
108H TYR* 1.3 59.1 + - - +
110H HIS* 3.8 5.3 - - - +
111H ASP* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with TYR 108 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104H SER 2.9 18.3 + - - +
105H HIS* 3.8 5.6 - - - +
106H ALA 3.3 0.2 - - - -
107H LEU* 1.3 75.9 - - - +
109H GLN* 1.3 60.4 + - - +
111H ASP* 3.3 5.1 + - - +
112H ALA* 2.9 31.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 109 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105H HIS 2.9 17.9 + - - +
106H ALA* 4.2 4.9 - - - +
108H TYR* 1.3 76.2 - - - +
110H HIS* 1.3 57.0 + - - +
112H ALA* 4.2 4.0 - - - +
113H ALA* 2.9 32.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS 110 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H ALA 2.9 22.1 + - - +
107H LEU* 3.9 5.6 - - - +
109H GLN* 1.3 75.7 - - - +
111H ASP* 1.3 59.0 + - - +
113H ALA* 3.9 3.9 - - - +
114H CYS* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with ASP 111 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109G GLN 5.8 0.2 - - - +
113G ALA* 4.6 20.6 - - + -
107H LEU 2.9 19.7 + - - +
108H TYR* 3.7 5.6 - - - +
110H HIS* 1.3 75.9 - - - +
112H ALA* 1.3 60.0 + - - +
114H CYS* 3.3 5.6 + - - +
115H ARG* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 112 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108H TYR 2.9 18.0 + - - +
109H GLN* 4.2 4.0 - - - +
111H ASP* 1.3 76.5 - - - +
113H ALA* 1.3 57.5 - - - +
115H ARG* 3.3 6.6 + - - +
116H VAL* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 113 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109H GLN 2.9 21.9 + - - +
110H HIS* 4.2 4.5 - - - +
112H ALA* 1.3 76.0 - - - +
114H CYS* 1.3 57.3 + - - +
116H VAL* 4.1 5.6 - - - +
117H ILE* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with CYS 114 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117G ILE* 5.3 14.1 - - + -
110H HIS 2.9 22.3 + - - +
111H ASP* 3.6 6.5 - - - +
112H ALA 3.2 0.2 - - - -
113H ALA* 1.3 77.0 - - - +
115H ARG* 1.3 60.2 + - - +
117H ILE* 3.8 5.5 - - - +
118H ALA* 2.9 28.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 115 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111H ASP 2.9 15.9 + - - +
112H ALA* 3.3 7.4 + - - +
114H CYS* 1.3 75.4 - - - +
116H VAL* 1.3 59.1 + - - +
118H ALA* 3.2 6.8 + - - +
119H ARG* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 116 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112H ALA 2.9 17.2 + - - +
113H ALA* 4.1 5.6 - - - +
115H ARG* 1.3 76.1 - - - +
117H ILE* 1.3 58.2 + - - +
119H ARG* 3.5 5.6 + - - +
120H LEU* 2.9 28.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 117 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113H ALA 2.9 21.8 + - - +
114H CYS* 3.9 6.3 - - - +
116H VAL* 1.3 74.9 - - - +
118H ALA* 1.3 59.9 + - - +
120H LEU* 3.8 6.0 - - - +
121H THR* 2.9 28.9 + - - -
----------------------------------------------------------
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Residues in contact with ALA 118 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120G LEU* 5.7 9.2 - - + -
114H CYS 2.9 18.5 + - - +
115H ARG* 3.2 9.1 + - - +
117H ILE* 1.3 75.4 - - - +
119H ARG* 1.3 59.6 + - - +
121H THR* 3.3 7.2 + - - -
122H LYS* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 119 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115H ARG 2.9 17.1 + - - +
116H VAL* 3.9 6.5 - - - +
118H ALA* 1.3 73.2 - - - +
120H LEU* 1.3 61.5 + - - +
122H LYS* 3.1 8.4 + - - +
123H GLU* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 120 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116H VAL 2.9 19.5 + - - +
117H ILE* 3.9 7.0 - - - +
119H ARG* 1.3 77.0 - - - +
121H THR* 1.3 57.8 + - - +
123H GLU* 3.9 4.6 - - - +
124H VAL* 2.9 32.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 121 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117H ILE 2.9 18.3 + - - -
118H ALA* 3.6 7.4 - - - -
120H LEU* 1.3 75.3 - - - +
122H LYS* 1.3 59.1 + - - +
124H VAL* 4.2 4.8 - - - +
125H THR* 2.9 30.5 + - - -
----------------------------------------------------------
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Residues in contact with LYS 122 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118H ALA 2.9 14.1 + - - +
119H ARG* 3.1 11.2 + - - +
121H THR* 1.3 76.0 - - - +
123H GLU* 1.3 59.4 + - - +
125H THR* 3.4 5.0 + - - -
126H ALA* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119H ARG 2.9 15.2 + - - +
120H LEU* 4.2 4.5 - - - +
122H LYS* 1.3 74.2 - - - +
124H VAL* 1.3 61.0 + - - +
126H ALA* 3.3 6.4 + - - +
127H ALA* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 124 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120H LEU 2.9 21.4 + - - +
121H THR* 4.2 4.7 - - - +
123H GLU* 1.3 77.3 - - - +
125H THR* 1.3 58.6 + - - +
127H ALA* 3.9 5.1 - - - +
128H ARG* 2.9 30.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 125 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121H THR 2.9 21.2 + - - -
122H LYS* 3.7 5.8 - - - -
124H VAL* 1.3 75.9 - - - +
126H ALA* 1.3 59.6 + - - +
128H ARG* 4.0 4.6 - - - +
129H GLU* 2.9 31.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 126 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122H LYS 2.9 17.0 + - - +
123H GLU* 3.3 7.6 + - - +
125H THR* 1.3 78.0 - - - +
127H ALA* 1.3 56.5 + - - +
129H GLU* 4.1 3.6 - - - +
130H ALA* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 127 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123H GLU 2.9 16.3 + - - +
124H VAL* 4.1 6.1 - - - +
126H ALA* 1.3 75.5 - - - +
128H ARG* 1.3 58.9 + - - +
130H ALA* 3.5 5.5 - - - +
131H LEU* 2.9 32.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 128 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124H VAL 2.9 20.1 + - - +
125H THR* 4.0 5.6 - - - +
126H ALA 3.4 0.2 - - - -
127H ALA* 1.3 76.6 - - - +
129H GLU* 1.3 51.4 + - - +
131H LEU* 4.7 2.0 - - - +
132H ALA* 2.6 39.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 129 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125H THR 2.9 19.0 + - - +
126H ALA* 4.1 4.0 - - - +
128H ARG* 1.3 73.3 - - - +
130H ALA* 1.3 61.3 + - - +
132H ALA* 4.1 4.3 - - - -
133H THR* 2.9 34.0 + - - -
----------------------------------------------------------
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Residues in contact with ALA 130 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126H ALA 2.9 19.7 + - - +
127H ALA* 3.5 8.3 - - - +
129H GLU* 1.3 77.0 - - - +
131H LEU* 1.3 59.3 + - - +
133H THR* 3.9 1.3 - - - -
134H LEU* 2.9 32.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 131 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127H ALA 2.9 18.2 + - - +
128H ARG* 4.7 1.3 - - - +
130H ALA* 1.3 75.6 - - - +
132H ALA* 1.3 60.5 + - - +
134H LEU* 3.9 5.7 - - - +
135H LYS* 3.3 22.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 132 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128H ARG 2.6 25.4 + - - +
129H GLU* 3.9 4.9 - - - +
130H ALA 3.2 0.2 - - - -
131H LEU* 1.3 78.1 - - - +
133H THR* 1.3 62.0 + - - +
135H LYS* 3.5 17.3 + - - +
136H PRO* 4.6 1.4 - - - +
----------------------------------------------------------
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Residues in contact with THR 133 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129H GLU 2.9 17.5 + - - -
130H ALA* 4.2 1.3 - - - -
132H ALA* 1.3 77.6 - - - +
134H LEU* 1.3 60.3 + - - +
135H LYS 3.5 0.5 + - - -
136H PRO* 4.2 8.7 - - - +
137H GLN* 4.3 7.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 134 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H ALA 2.9 20.5 + - - +
131H LEU* 4.0 4.9 - - - +
133H THR* 1.3 76.1 - - - +
135H LYS* 1.3 64.9 + - - +
136H PRO 3.6 0.2 - - - -
137H GLN* 3.5 23.0 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il