Contacts of the helix formed by residues 347 - 390 (chain A) in PDB entry 6FQS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 347 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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206A ILE* 4.2 7.5 - - - +
234A TYR 3.1 15.5 - - - +
235A GLU 3.5 22.1 + - - +
236A THR 4.1 3.5 + - - +
237A GLY 4.1 5.4 - - - +
335A MET* 3.8 6.1 - - - -
346A ILE* 1.3 76.6 - - - +
348A LEU* 1.3 65.9 + - - +
349A LYS* 3.0 10.2 + - - +
350A GLU* 2.9 37.1 + - - -
351A ALA* 3.1 19.6 + - - +
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Residues in contact with LEU 348 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168A LEU* 3.9 27.1 - - + -
186A HIS* 5.1 2.0 - - - +
191A LEU* 5.3 0.2 - - + -
206A ILE* 4.3 4.5 - - + -
209A LEU* 4.4 19.5 - - + -
210A MET* 4.9 4.7 - - + -
213A ILE* 4.2 28.5 - - + -
234A TYR* 3.0 67.1 + - + +
335A MET* 3.7 9.1 - - + +
347A ASN* 1.3 71.0 - - - +
349A LYS* 1.3 63.4 + - - +
351A ALA* 3.4 5.6 + - - +
352A LEU* 3.2 30.0 + - + +
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Residues in contact with LYS 349 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198A LEU* 4.2 15.5 - - + -
202A PRO 2.9 28.4 + - - -
203A ASP* 3.8 6.7 + - - +
204A ILE* 2.9 28.9 + - + +
205A SER* 5.3 1.3 - - - -
206A ILE* 3.6 17.6 - - + +
209A LEU* 3.8 21.3 - - + -
347A ASN* 3.0 8.3 + - - +
348A LEU* 1.3 76.0 - - - +
350A GLU* 1.3 67.6 + - - +
352A LEU* 3.2 3.8 + - - +
353A VAL* 2.8 39.3 + - + +
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Residues in contact with GLU 350 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A LYS* 2.2 40.9 + - - +
345A LEU 4.5 0.5 - - - +
346A ILE* 3.5 22.3 - - + +
347A ASN* 2.9 38.1 + - - +
349A LYS* 1.3 76.2 - - - +
351A ALA* 1.3 64.2 + - - +
353A VAL* 2.9 19.1 + - + +
354A HIS* 2.9 33.1 + - - +
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Residues in contact with ALA 351 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A VAL* 4.2 9.1 - - - +
167A LEU* 4.6 6.5 - - + -
168A LEU* 4.0 28.7 - - + -
335A MET* 5.6 2.5 - - - -
346A ILE* 3.8 26.2 - - + +
347A ASN 3.1 7.3 + - - +
348A LEU* 3.6 9.9 - - - +
349A LYS 3.3 0.2 - - - -
350A GLU* 1.3 78.6 - - - +
352A LEU* 1.3 62.9 + - - +
354A HIS* 3.7 2.1 + - - +
355A TYR* 3.2 22.0 + - - +
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Residues in contact with LEU 352 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165A PRO* 5.2 6.3 - - + -
168A LEU* 3.7 23.1 - - + -
191A LEU* 4.6 12.8 - - + +
194A GLY 4.6 9.0 - - - +
195A VAL* 3.8 22.9 - - + +
198A LEU* 3.7 14.4 - - + +
209A LEU* 3.8 35.0 - - + -
213A ILE* 4.2 18.6 - - + -
348A LEU* 3.2 14.2 + - + +
349A LYS 3.8 3.4 - - - +
351A ALA* 1.3 75.0 - - - +
353A VAL* 1.3 60.3 + - - +
355A TYR* 3.2 6.2 + - + +
356A LEU* 2.8 31.5 + - - +
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Residues in contact with VAL 353 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198A LEU* 3.9 23.1 - - + -
349A LYS* 2.8 46.1 + - + +
350A GLU* 2.9 8.0 + - + +
352A LEU* 1.3 74.1 - - - +
354A HIS* 1.3 72.2 + - + +
356A LEU* 3.3 3.4 + - - +
357A GLU* 3.1 33.2 + - + +
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Residues in contact with HIS 354 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A VAL* 4.1 28.5 - - + -
39A ARG* 4.9 5.5 - - + +
339A VAL* 3.5 39.2 - - + +
340A ASN* 5.5 3.8 - - - -
344A LYS* 5.3 1.4 - - - +
346A ILE* 5.0 2.2 - - + -
350A GLU* 2.9 44.7 + - + +
351A ALA 4.1 0.2 - - - +
353A VAL* 1.3 81.8 - - + +
355A TYR* 1.3 62.6 + - - +
357A GLU* 3.3 8.8 + - - +
358A HIS* 3.0 22.3 + - - +
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Residues in contact with TYR 355 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A VAL 4.9 8.6 + - - +
39A ARG* 3.6 22.0 - - - +
162A ALA 2.9 28.9 + - - -
163A ARG 3.1 6.2 + - - -
164A PHE* 3.0 20.8 + - - -
165A PRO* 3.5 43.9 - - + +
195A VAL* 4.1 20.0 - - + -
351A ALA 3.2 19.3 + - - +
352A LEU* 3.2 6.7 + - + +
354A HIS* 1.3 77.4 - - - +
356A LEU* 1.3 66.9 + - - +
358A HIS* 3.0 17.2 + - + +
359A GLN* 3.0 38.1 + - + +
473A LEU* 4.2 8.0 - - + +
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Residues in contact with LEU 356 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195A VAL* 3.9 22.4 - - + +
198A LEU* 4.1 17.9 - - + +
199A SER* 3.8 38.1 - - - +
352A LEU 2.8 19.9 + - - +
353A VAL* 3.8 4.0 - - - +
355A TYR* 1.3 78.4 - - - +
357A GLU* 1.3 61.0 + - + +
359A GLN* 3.3 4.5 + - + +
360A LYS* 3.1 45.4 + - + +
466A LEU* 4.8 6.7 - - + -
469A VAL* 4.6 19.3 - - + -
473A LEU* 5.1 1.1 - - + -
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Residues in contact with GLU 357 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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353A VAL* 3.1 26.1 + - + +
354A HIS* 3.6 12.6 - - - +
356A LEU* 1.3 75.0 - - + +
358A HIS* 1.3 65.6 + - - +
360A LYS* 2.8 38.2 + - - +
361A THR* 3.1 27.4 + - - -
364A ARG* 5.7 1.2 + - - -
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Residues in contact with HIS 358 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A ARG* 3.8 49.3 + - + +
143A THR 5.4 0.7 - - - -
144A ILE* 4.2 5.6 - - + -
159A VAL* 4.1 20.0 - - + -
160A LEU 3.0 26.4 + - - -
161A PRO 3.1 19.5 + - - -
354A HIS 3.0 12.5 + - - +
355A TYR* 3.0 12.0 + + - +
357A GLU* 1.3 76.1 - - - +
359A GLN* 1.3 68.1 + - - +
361A THR* 3.2 11.6 + - + +
362A VAL* 2.8 45.8 + - + +
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Residues in contact with GLN 359 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161A PRO 3.3 12.9 + - - -
162A ALA 2.9 18.2 + - - -
163A ARG* 2.9 41.1 + - - +
355A TYR* 3.0 49.2 + - + +
356A LEU* 3.3 9.4 + - + +
358A HIS* 1.3 83.4 - - - +
360A LYS* 1.3 63.3 + - - +
362A VAL* 3.2 3.9 + - - +
363A VAL* 2.9 30.2 + - + +
469A VAL* 3.8 22.4 - - + +
473A LEU* 5.0 6.4 - - + +
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Residues in contact with LYS 360 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356A LEU* 3.1 39.6 + - + +
357A GLU* 2.8 38.6 + - - +
358A HIS 3.3 0.2 - - - -
359A GLN* 1.3 75.8 - - - +
361A THR* 1.3 58.9 + - - +
363A VAL* 3.8 0.7 - - - +
364A ARG* 2.8 53.2 + - - +
462A GLU* 5.3 6.1 - - - -
465A LEU* 4.4 10.4 - - + +
466A LEU* 4.8 19.5 - - + +
469A VAL* 4.4 17.9 - - + +
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Residues in contact with THR 361 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143A THR 4.7 3.8 - - - +
357A GLU* 3.1 13.9 + - - -
358A HIS* 3.4 15.5 - - + +
360A LYS* 1.3 76.5 - - - +
362A VAL* 1.3 59.0 + - - +
364A ARG* 3.8 18.9 + - - +
365A ARG* 2.8 59.6 + - + +
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Residues in contact with VAL 362 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A ASP* 5.0 4.3 - - + +
143A THR* 3.3 34.1 - - + +
161A PRO* 3.9 23.6 - - + +
163A ARG* 4.1 30.1 - - - +
358A HIS* 2.8 40.7 + - + +
359A GLN* 3.2 10.3 + - - +
361A THR* 1.3 76.6 - - + +
363A VAL* 1.3 60.5 + - - +
365A ARG 3.6 0.2 - - - -
366A ARG* 2.7 29.8 + - + +
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Residues in contact with VAL 363 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A ARG* 3.9 26.5 - - - +
359A GLN 2.9 20.1 + - - +
362A VAL* 1.3 74.9 - - + +
364A ARG* 1.3 57.6 + - - +
366A ARG* 3.1 16.0 + - - +
367A THR* 2.8 31.7 + - - +
458A ILE* 5.6 0.2 - - + -
465A LEU* 3.4 26.9 - - + -
468A LEU* 3.8 26.7 - - + -
469A VAL* 3.7 17.9 - - + +
472A GLU* 4.2 7.0 - - - +
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Residues in contact with ARG 364 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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357A GLU* 5.7 1.4 + - - -
360A LYS* 2.8 47.4 + - - +
361A THR* 3.8 23.0 + - - +
363A VAL* 1.3 74.1 - - - +
365A ARG* 1.3 67.0 + - + +
367A THR* 3.1 5.7 + - - -
368A GLN* 3.0 48.8 + - - +
458A ILE* 6.5 0.2 - - - -
459A LEU* 4.3 10.3 - - + -
462A GLU* 4.2 22.3 + - - -
465A LEU* 3.8 24.8 - - + +
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Residues in contact with ARG 365 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142A ASP* 3.1 49.2 + - - +
143A THR* 3.3 24.0 + - - -
144A ILE* 3.6 13.9 + - - +
145A ASP* 3.0 37.0 + - - +
361A THR* 2.8 38.9 + - + +
362A VAL 3.7 2.9 - - - +
364A ARG* 1.3 76.2 - - + +
366A ARG* 1.3 57.5 + - - +
368A GLN* 3.6 15.1 + - - +
369A TYR* 3.1 26.9 + - - +
372A ARG* 5.1 0.3 + - - -
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Residues in contact with ARG 366 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A ARG* 4.5 3.4 - - - +
138A ASP* 2.9 37.2 + - - -
141A LYS* 3.7 34.3 - - + +
143A THR* 3.7 11.4 - - + +
163A ARG* 3.3 5.3 - - - +
362A VAL* 2.7 21.7 + - + +
363A VAL* 3.5 15.9 + - - +
364A ARG 3.1 0.2 - - - -
365A ARG* 1.3 73.8 - - - +
367A THR* 1.3 69.7 + - - +
369A TYR* 3.2 2.8 + - - +
370A ASN* 2.9 32.4 + - - +
468A LEU* 4.0 18.8 - - - +
472A GLU* 2.8 42.0 + - - -
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Residues in contact with THR 367 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363A VAL* 2.8 27.6 + - - +
364A ARG* 3.7 4.0 - - - -
366A ARG* 1.3 77.6 + - - +
368A GLN* 1.3 57.8 + - - +
370A ASN* 3.2 8.7 + - - +
371A LEU* 2.8 28.2 + - - +
455A LEU* 3.5 34.0 - - + +
458A ILE* 4.0 23.4 - - + +
459A LEU* 3.5 31.4 - - + -
468A LEU* 4.8 1.7 - - - +
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Residues in contact with GLN 368 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364A ARG* 3.0 43.0 + - - +
365A ARG* 3.8 16.8 - - - +
367A THR* 1.3 76.6 - - - +
369A TYR* 1.3 56.5 + - - +
371A LEU* 3.3 6.3 + - - +
372A ARG* 2.9 50.4 + - + +
459A LEU* 3.8 23.0 - - + +
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Residues in contact with TYR 369 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140A ASN* 4.4 9.0 + - - +
141A LYS* 3.2 61.2 - - + +
142A ASP* 4.0 5.2 - - + -
365A ARG 3.1 11.5 + - - +
366A ARG 3.2 2.4 + - - +
368A GLN* 1.3 75.7 - - - +
370A ASN* 1.3 63.3 + - - +
372A ARG* 3.3 30.1 + - - +
373A LYS* 2.7 70.8 + - + +
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Residues in contact with ASN 370 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A LYS* 3.9 18.8 + - - +
366A ARG* 2.9 37.5 + - - +
367A THR* 3.6 6.4 - - - +
369A TYR* 1.3 92.4 - - - +
371A LEU* 1.3 52.9 + - - +
373A LYS* 3.7 8.7 - - - +
374A ALA* 2.7 37.4 + - - +
451A TYR* 3.4 29.0 + - + +
455A LEU* 3.6 11.0 - - + +
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Residues in contact with LEU 371 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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367A THR 2.8 21.3 + - - +
368A GLN* 3.6 6.3 - - - +
370A ASN* 1.3 73.6 - - - +
372A ARG* 1.3 64.3 + - + +
374A ALA* 3.3 1.8 + - - +
375A LYS* 2.9 44.3 + - + +
452A ILE* 3.7 28.0 - - + +
455A LEU* 3.3 32.2 - - + +
456A GLU* 3.7 26.0 - - + +
459A LEU* 3.9 19.1 - - + -
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Residues in contact with ARG 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142A ASP* 3.5 26.0 + - - +
365A ARG 5.1 0.2 + - - -
368A GLN* 2.9 43.0 + - + +
369A TYR* 3.6 35.5 - - + +
371A LEU* 1.3 76.3 - - + +
373A LYS* 1.3 63.3 + - - +
375A LYS* 3.5 5.7 + - - +
376A ASP* 3.2 31.8 + - - +
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Residues in contact with LYS 373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369A TYR* 2.7 57.4 + - + +
370A ASN* 3.7 9.6 - - - +
372A ARG* 1.3 74.2 - - - +
374A ALA* 1.3 63.2 + - - +
376A ASP* 3.5 7.8 + - - +
377A ARG* 3.3 19.6 + - - +
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Residues in contact with ALA 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370A ASN 2.7 21.3 + - - +
371A LEU* 3.7 4.3 - - - +
373A LYS* 1.3 72.2 - - - +
375A LYS* 1.3 66.1 + - - +
377A ARG* 3.0 7.2 + - - +
378A ALA* 2.9 22.0 + - - +
448A LEU* 3.6 26.1 - - + +
451A TYR* 4.2 15.0 - - + -
452A ILE* 3.8 18.4 - - + -
455A LEU* 4.7 0.7 - - + -
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Residues in contact with LYS 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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371A LEU* 2.9 32.6 + - + +
372A ARG* 4.0 5.8 - - - +
374A ALA* 1.3 75.9 - - - +
376A ASP* 1.3 66.3 + - - +
378A ALA* 3.1 4.4 + - - +
379A HIS* 2.9 24.7 + - - +
452A ILE* 4.0 28.3 - - + -
456A GLU* 3.8 23.2 + - - -
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Residues in contact with ASP 376 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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372A ARG* 3.2 15.1 + - - +
373A LYS* 3.7 10.7 - - - +
374A ALA 3.2 0.2 - - - -
375A LYS* 1.3 79.0 - - - +
377A ARG* 1.3 62.4 + - - +
379A HIS* 3.3 8.4 + - - +
380A ILE* 3.1 29.3 + - + +
420A LYS* 4.8 15.9 + - + -
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Residues in contact with ARG 377 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373A LYS 3.3 9.2 + - - +
374A ALA* 3.0 10.8 + - - +
376A ASP* 1.3 76.9 - - - +
378A ALA* 1.3 61.2 + - - +
380A ILE* 3.2 25.3 + - - +
381A LEU* 2.9 43.8 + - + +
384A LEU* 5.5 3.2 - - - +
432A ARG* 4.6 13.3 - - - +
444A GLU* 3.0 31.9 + - - +
448A LEU* 3.6 19.1 - - + -
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Residues in contact with ALA 378 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374A ALA 2.9 12.4 + - - +
375A LYS* 3.1 12.1 + - - +
377A ARG* 1.3 76.0 - - - +
379A HIS* 1.3 61.2 + - - +
381A LEU 3.3 0.7 + - - -
382A GLU* 3.0 33.3 + - - +
445A TYR* 3.5 19.8 - - + -
448A LEU* 3.5 16.5 - - + +
449A LEU* 4.9 5.8 - - + -
452A ILE* 4.3 13.7 - - + -
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Residues in contact with HIS 379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A LYS 2.9 12.1 + - - +
376A ASP* 3.4 11.7 - - - +
378A ALA* 1.3 77.8 - - - +
380A ILE* 1.3 71.7 + - + +
382A GLU* 3.4 18.4 + - - +
418A SER* 2.7 35.4 + - - -
420A LYS* 4.8 10.3 - - + +
421A GLN* 3.0 48.0 + - + -
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Residues in contact with ILE 380 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376A ASP* 3.1 17.4 + - + +
377A ARG* 3.2 29.1 + - - +
379A HIS* 1.3 77.6 - - + +
381A LEU* 1.3 66.5 + - - +
383A GLY* 3.3 3.3 + - - -
384A LEU* 3.2 26.1 + - + +
420A LYS* 3.7 43.1 - - + +
421A GLN* 4.2 5.2 - - - +
424A ALA* 3.7 23.4 - - + +
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Residues in contact with LEU 381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A ARG* 2.9 44.0 + - - +
378A ALA 3.6 4.9 - - - +
379A HIS 3.3 0.2 - - - -
380A ILE* 1.3 74.9 - - - +
382A GLU* 1.3 54.4 + - - +
384A LEU* 3.0 14.9 + - + +
385A ARG* 2.7 39.8 + - - +
432A ARG* 5.6 0.4 - - - +
441A ILE* 3.9 25.3 - - + +
444A GLU* 3.7 23.8 - - + +
445A TYR* 3.5 45.5 - - + +
448A LEU* 4.2 7.6 - - + -
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Residues in contact with GLU 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A ALA* 3.0 19.4 + - - +
379A HIS* 3.5 18.3 + - - +
381A LEU* 1.3 77.1 - - - +
383A GLY* 1.3 57.2 + - - +
385A ARG* 3.2 17.0 + - - +
386A ILE* 2.9 38.5 + - + +
421A GLN* 3.9 10.9 + - - +
445A TYR* 3.0 33.3 + - + +
449A LEU* 5.9 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A ILE 3.3 6.3 + - - -
381A LEU 3.2 0.6 - - - -
382A GLU* 1.3 77.7 - - - +
384A LEU* 1.3 55.3 + - - +
386A ILE* 3.4 2.8 + - - +
387A ALA* 2.7 36.4 + - - +
417A LEU* 4.1 12.8 - - - -
421A GLN* 3.3 30.4 - - - +
425A ILE* 3.7 7.1 - - - +
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Residues in contact with LEU 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A ARG* 5.5 2.7 - - - +
380A ILE* 3.2 21.4 + - + +
381A LEU* 3.0 18.7 + - + +
383A GLY* 1.3 76.6 - - - +
385A ARG* 1.3 60.6 + - - +
387A ALA* 3.6 2.9 - - - +
388A LEU* 2.8 37.2 + - - +
424A ALA* 4.5 10.1 - - + +
425A ILE* 4.1 18.4 - - + +
428A MET* 3.3 29.6 - - + -
432A ARG* 3.6 31.2 - - - +
441A ILE* 3.9 21.3 - - + -
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Residues in contact with ARG 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A LEU 2.7 19.6 + - - +
382A GLU* 3.5 23.4 + - - +
384A LEU* 1.3 73.2 - - - +
386A ILE* 1.3 64.3 + - + +
388A LEU* 3.2 4.1 + - - +
389A ASP* 3.1 33.6 + - - +
438A ARG* 3.6 15.4 - - - +
441A ILE* 4.1 12.3 - - + +
442A GLU* 2.9 43.6 + - - +
445A TYR* 4.2 41.2 + - - -
----------------------------------------------------------
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Residues in contact with ILE 386 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382A GLU* 2.9 25.9 + - + +
383A GLY* 3.5 4.9 - - - +
385A ARG* 1.3 78.8 - - + +
387A ALA* 1.3 64.5 + - - +
389A ASP* 3.3 5.1 + - - -
390A HIS* 3.1 32.4 + - + +
394A ILE* 5.9 0.2 - - + -
415A PHE* 4.3 36.1 - - + +
416A LYS 5.9 0.7 - - - +
417A LEU* 4.1 22.4 - - + -
421A GLN* 5.1 2.9 - - - +
----------------------------------------------------------
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Residues in contact with ALA 387 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A GLY 2.7 21.2 + - - +
384A LEU* 3.2 6.9 + - - +
386A ILE* 1.3 74.7 - - - +
388A LEU* 1.3 59.8 + - - +
390A HIS 3.4 1.2 - - - -
391A ILE* 2.9 33.2 + - + +
394A ILE* 3.7 17.4 - - + +
425A ILE* 3.3 35.0 - - + -
428A MET* 4.3 8.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 388 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A LEU* 2.8 22.4 + - + +
385A ARG* 3.8 2.7 - - - +
387A ALA* 1.3 76.3 - - + +
389A ASP* 1.3 62.4 + - - +
391A ILE* 3.3 25.8 - - + +
428A MET* 4.3 14.8 - - + -
432A ARG 4.4 9.9 - - - +
433A LEU* 3.8 30.7 - - + -
438A ARG* 3.3 43.3 - - + +
441A ILE* 3.8 27.8 - - + -
399C ARG* 5.4 0.5 + - - -
----------------------------------------------------------
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Residues in contact with ASP 389 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385A ARG* 3.1 20.2 + - - +
386A ILE* 3.8 3.2 - - - +
388A LEU* 1.3 79.2 - - - +
390A HIS* 1.3 75.5 + - + +
391A ILE* 3.4 5.0 + - - +
438A ARG* 4.0 19.4 + - - -
----------------------------------------------------------
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Residues in contact with HIS 390 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A ILE* 3.1 20.5 + - + +
387A ALA 3.4 3.6 - - - +
389A ASP* 1.3 93.1 + - + +
391A ILE* 1.3 63.7 + - - +
392A ASP* 3.4 2.5 - - - -
393A GLU* 3.2 22.5 + - - +
394A ILE* 3.2 11.0 + - + +
415A PHE* 3.4 38.8 - + + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il