Contacts of the helix formed by residues 1045 - 1090 (chain M) in PDB entry 6G0L
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER1045 (chain M).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007M MET* 3.6 14.7 + - - +
1008M ASP* 3.2 23.5 + - - -
1044M LYS* 1.3 75.5 - - - +
1046M PHE* 1.3 67.7 + - - +
1047M GLU* 4.3 8.3 - - - +
1048M LYS* 3.2 21.5 + - - +
1049M TYR* 3.1 16.7 + - - -
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Residues in contact with PHE1046 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032M LEU* 3.6 26.8 - - + +
1033M ASP* 3.2 27.6 - - - -
1036M ILE* 3.6 24.2 - - + -
1044M LYS 5.0 6.5 - - - -
1045M SER* 1.3 74.3 - - - +
1047M GLU* 1.3 57.5 + - - +
1049M TYR* 3.1 10.2 + - - +
1050M GLY* 2.9 24.3 + - - -
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Residues in contact with GLU1047 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1045M SER* 3.2 6.6 - - - +
1046M PHE* 1.3 79.0 - - - +
1048M LYS* 1.3 56.6 + - - +
1050M GLY* 3.3 2.7 + - - +
1051M GLU* 2.9 55.9 + - - +
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Residues in contact with LYS1048 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007M MET 4.3 3.6 - - - +
1008M ASP* 2.6 47.3 + - + +
1010M ILE* 3.4 41.4 - - + +
1044M LYS* 5.5 0.4 - - + -
1045M SER* 3.2 25.3 + - - +
1047M GLU* 1.3 76.8 - - - +
1049M TYR* 1.3 61.0 + - + +
1051M GLU* 4.4 15.9 - - + +
1052M THR* 2.8 50.4 + - + +
----------------------------------------------------------
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Residues in contact with TYR1049 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010M ILE* 4.7 14.9 - - + +
1014M GLU* 5.5 3.8 - - + +
1018M LEU* 4.0 26.4 - - + +
1028M LEU* 4.7 8.1 - - + +
1032M LEU* 4.0 16.8 - - + -
1036M ILE* 4.0 20.4 - - + -
1041M LEU* 3.7 33.2 - - + +
1042M PRO* 2.8 30.3 + - + +
1044M LYS* 3.5 33.6 - - + +
1045M SER 3.1 22.4 + - - -
1046M PHE* 3.1 11.0 + - - +
1048M LYS* 1.3 77.8 - - + +
1050M GLY* 1.3 58.2 + - - +
1052M THR* 3.0 6.5 + - - -
1053M TYR* 2.9 31.2 + - - +
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Residues in contact with GLY1050 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028M LEU* 6.0 0.4 - - - -
1029M LYS* 5.5 10.8 - - - -
1032M LEU* 5.6 0.4 - - - +
1046M PHE 2.9 13.8 + - - -
1047M GLU* 3.3 6.0 + - - -
1048M LYS 3.2 0.2 - - - -
1049M TYR* 1.3 77.7 - - - +
1051M GLU* 1.3 56.1 + - - +
1053M TYR* 3.4 5.0 + - - +
1054M ASP* 2.9 39.1 + - - +
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Residues in contact with GLU1051 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1047M GLU* 2.9 48.0 + - - +
1048M LYS* 3.9 18.1 - - + +
1050M GLY* 1.3 76.9 - - - +
1052M THR* 1.3 58.7 + - + +
1054M ASP* 3.3 6.9 + - - +
1055M GLU* 2.9 43.6 + - - +
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Residues in contact with THR1052 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010M ILE* 4.3 18.1 - - + +
1015M VAL* 6.4 0.2 - - + -
1018M LEU* 3.7 18.5 - - - +
1048M LYS* 2.8 44.4 + - + +
1049M TYR* 3.0 17.7 + - - -
1051M GLU* 1.3 75.1 - - + +
1053M TYR* 1.3 56.9 + - - +
1055M GLU* 3.8 12.9 - - - +
1056M MET* 2.9 33.6 + - - +
1122M PHE* 5.0 12.3 - - + -
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Residues in contact with TYR1053 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018M LEU* 5.1 3.8 - - + +
1022M ILE* 3.6 32.8 - - + -
1026M GLY 3.9 13.6 + - - -
1027M ASN* 3.6 34.2 + - - +
1028M LEU* 3.8 22.2 - - + -
1029M LYS* 4.2 19.5 - - + -
1049M TYR 2.9 19.7 + - - +
1050M GLY* 3.7 5.2 - - - +
1052M THR* 1.3 78.3 + - - +
1054M ASP* 1.3 69.5 + - - +
1056M MET* 3.3 4.2 + - - +
1057M MET* 2.9 57.7 + - + +
1137M VAL* 3.9 20.3 - - - +
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Residues in contact with ASP1054 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1029M LYS* 4.4 15.0 + - - +
1050M GLY* 2.9 26.1 + - - +
1051M GLU* 3.8 6.6 - - - +
1053M TYR* 1.3 88.1 - - - +
1055M GLU* 1.3 59.0 + - + +
1057M MET* 4.3 3.5 - - - +
1058M GLU* 2.9 33.3 + - - +
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Residues in contact with GLU1055 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1051M GLU* 2.9 29.9 + - + +
1052M THR* 3.9 10.8 - - - +
1053M TYR 3.3 0.2 - - - -
1054M ASP* 1.3 74.6 - - + +
1056M MET* 1.3 60.0 + - - +
1058M GLU* 4.1 4.0 - - - +
1059M ALA* 2.9 32.4 + - - +
1122M PHE* 4.1 24.4 - - + -
1123M LYS* 5.8 2.1 - - - -
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Residues in contact with MET1056 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015M VAL* 4.5 26.7 - - + +
1018M LEU* 5.1 11.2 - - + -
1019M TYR* 3.8 27.8 - - + -
1022M ILE* 3.7 29.2 - - + -
1052M THR* 2.9 19.6 + - - +
1053M TYR* 3.8 4.7 - - - +
1055M GLU* 1.3 74.8 - - - +
1057M MET* 1.3 63.1 - - + +
1059M ALA* 3.9 3.2 - - - +
1060M ALA* 2.9 29.3 + - - +
1120M PHE* 4.6 12.5 - - + -
1122M PHE* 4.6 21.7 - - + -
1128M LEU* 5.6 4.7 - - + -
1133M LEU* 4.2 14.4 - - + -
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Residues in contact with MET1057 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1022M ILE* 5.1 6.1 - - - -
1053M TYR* 2.9 56.9 + - + +
1054M ASP* 4.3 3.6 - - - +
1056M MET* 1.3 75.9 - - + +
1058M GLU* 1.3 61.3 + - - +
1060M ALA* 3.2 4.0 + - + +
1061M LYS* 2.9 39.0 + - + +
1133M LEU* 4.4 23.6 - - + +
1134M LEU* 3.7 29.2 - - + -
1137M VAL* 4.1 25.6 - - + -
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Residues in contact with GLU1058 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1054M ASP 2.9 21.5 + - - +
1055M GLU* 4.1 4.0 - - - +
1057M MET* 1.3 77.2 - - - +
1059M ALA* 1.3 57.6 + - - +
1061M LYS* 3.3 13.6 + - - +
1062M ASP* 2.9 62.2 + - - +
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Residues in contact with ALA1059 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1055M GLU 2.9 20.2 + - - +
1056M MET* 4.2 3.8 - - - +
1058M GLU* 1.3 78.6 - - - +
1060M ALA* 1.3 56.8 + - - +
1062M ASP* 3.9 7.2 - - - +
1063M CYS* 2.9 30.5 + - - +
1120M PHE* 5.0 14.3 - - + -
1122M PHE* 5.1 10.8 - - + -
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Residues in contact with ALA1060 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1056M MET 2.9 20.8 + - - +
1057M MET* 3.4 8.3 - - - +
1058M GLU 3.1 0.4 - - - -
1059M ALA* 1.3 74.7 - - - +
1061M LYS* 1.3 59.9 + - + +
1063M CYS* 3.3 2.8 + - - +
1064M VAL* 2.9 34.7 + - - +
1120M PHE* 4.4 8.9 - - + -
1130M ALA* 3.6 31.4 - - + +
1133M LEU* 4.5 10.8 - - + -
1134M LEU* 5.2 5.6 - - + -
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Residues in contact with LYS1061 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1057M MET* 2.9 25.7 + - + +
1058M GLU* 3.9 13.3 + - - +
1060M ALA* 1.3 74.8 - - - +
1062M ASP* 1.3 59.6 + - - +
1064M VAL* 3.3 6.3 + - - +
1065M HIS* 2.9 55.1 + - + +
1134M LEU* 3.7 31.4 - - + -
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Residues in contact with ASP1062 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1058M GLU* 2.9 48.3 + - - +
1059M ALA* 4.1 6.9 + - - +
1061M LYS* 1.3 78.4 - - - +
1063M CYS* 1.3 57.0 + - - +
1065M HIS* 3.3 15.2 + - - +
1066M GLU* 2.9 38.6 + - + +
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Residues in contact with CYS1063 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1059M ALA 2.9 20.9 + - - +
1060M ALA* 3.3 6.5 + - - +
1062M ASP* 1.3 77.0 - - - +
1064M VAL* 1.3 56.7 + - - +
1066M GLU* 3.6 6.7 + - - +
1067M GLU* 2.9 30.4 + - - +
1118M VAL* 3.6 20.2 - - + -
1119M LEU 4.0 6.7 - - - -
1120M PHE* 3.9 32.1 - - + -
----------------------------------------------------------
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Residues in contact with VAL1064 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1060M ALA 2.9 22.3 + - - +
1061M LYS* 3.3 6.7 + - - +
1063M CYS* 1.3 74.2 - - - +
1065M HIS* 1.3 64.9 + - + +
1067M GLU* 3.2 7.0 + - - +
1068M GLU* 2.9 49.2 + - + +
1118M VAL* 4.1 13.7 - - + -
1130M ALA* 3.7 26.0 - - + -
1131M GLU* 4.5 11.9 - - + +
1134M LEU* 4.5 15.5 - - + -
----------------------------------------------------------
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Residues in contact with HIS1065 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061M LYS* 2.9 48.8 + - + +
1062M ASP* 3.6 14.1 + - - +
1064M VAL* 1.3 84.1 - - + +
1066M GLU* 1.3 58.4 + - + +
1068M GLU* 3.2 15.6 + - - +
1069M LYS* 2.9 53.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU1066 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1062M ASP* 2.9 23.4 + - + +
1063M CYS* 4.0 6.1 - - - +
1065M HIS* 1.3 76.4 - - + +
1067M GLU* 1.3 56.8 + - - +
1069M LYS* 4.0 19.6 + - - +
1070M ASN* 2.9 53.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU1067 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1063M CYS* 2.9 21.2 + - - +
1064M VAL* 3.2 9.1 + - - +
1066M GLU* 1.3 75.5 - - - +
1068M GLU* 1.3 58.1 + - + +
1070M ASN* 4.9 4.2 + - - +
1071M ARG* 2.8 51.3 + - - +
1116M LYS* 2.9 29.7 + - - -
1117M ALA 5.6 1.3 - - - -
1118M VAL* 3.7 33.3 - - + +
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Residues in contact with GLU1068 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1064M VAL* 2.9 36.5 + - + +
1065M HIS* 3.6 14.3 - - - +
1067M GLU* 1.3 76.5 - - - +
1069M LYS* 1.3 60.5 + - + +
1071M ARG* 3.4 30.1 + - - +
1072M LYS* 2.9 46.5 + - + +
----------------------------------------------------------
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Residues in contact with LYS1069 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1065M HIS* 2.9 42.7 + - - +
1066M GLU* 4.0 22.1 + - - +
1068M GLU* 1.3 78.1 - - + +
1070M ASN* 1.3 66.0 + - - +
1072M LYS* 4.0 3.9 + - - +
1073M GLU* 3.5 18.9 + - - +
----------------------------------------------------------
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Residues in contact with ASN1070 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1066M GLU* 2.9 38.1 + - - +
1067M GLU* 4.4 5.9 + - - +
1069M LYS* 1.3 80.5 - - - +
1071M ARG* 1.3 58.9 + - - +
1073M GLU* 3.2 7.4 + - - +
1074M ILE* 2.9 39.3 + - + +
----------------------------------------------------------
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Residues in contact with ARG1071 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1067M GLU* 2.8 69.5 + - - +
1068M GLU* 3.4 29.9 - - - +
1070M ASN* 1.3 79.1 - - - +
1072M LYS* 1.3 75.6 + - - +
1074M ILE* 3.3 10.3 + - - +
1075M LEU* 2.9 43.0 + - + +
1111M LYS* 3.5 20.0 - - - +
1114M GLU* 3.7 22.7 - - - +
1116M LYS* 5.0 1.1 - - - +
1131M GLU* 5.7 2.6 + - - -
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Residues in contact with LYS1072 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1068M GLU* 2.9 36.4 + - - +
1069M LYS* 4.3 4.9 - - - +
1071M ARG* 1.3 102.0 - - - +
1073M GLU* 1.3 57.7 + - - +
1075M LEU* 3.3 17.4 + - + +
1076M GLU* 2.9 39.4 + - - +
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Residues in contact with GLU1073 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1069M LYS 3.5 12.6 + - - +
1070M ASN* 3.2 12.0 + - - +
1072M LYS* 1.3 76.7 - - - +
1074M ILE* 1.3 59.6 + - + +
1076M GLU* 3.2 23.8 + - - +
1077M LYS* 2.9 63.0 + - + +
1080M LYS* 5.4 1.4 + - - -
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Residues in contact with ILE1074 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1070M ASN* 2.9 25.5 + - + +
1071M ARG* 3.6 11.0 - - - +
1073M GLU* 1.3 76.0 - - + +
1075M LEU* 1.3 58.2 + - - +
1077M LYS* 3.2 9.1 + - + +
1078M LEU* 2.9 39.0 + - + +
1111M LYS* 3.9 26.0 - - - -
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Residues in contact with LEU1075 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1071M ARG* 2.9 29.5 + - + +
1072M LYS* 3.5 23.8 - - + +
1073M GLU 3.2 0.2 - - - -
1074M ILE* 1.3 77.5 - - - +
1076M GLU* 1.3 57.1 + - - +
1078M LEU* 3.3 4.3 + - - +
1079M GLU* 2.9 40.3 + - + +
1108M LEU* 4.4 15.2 - - + +
1111M LYS* 3.8 36.8 - - + +
1112M LYS* 5.7 6.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU1076 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1072M LYS* 2.9 24.8 + - - +
1073M GLU* 3.4 29.0 - - - +
1075M LEU* 1.3 76.9 - - + +
1077M LYS* 1.3 55.6 + - - +
1079M GLU* 3.1 16.4 + - - +
1080M LYS* 2.9 51.8 + - - +
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Residues in contact with LYS1077 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1073M GLU* 2.9 44.7 + - + +
1074M ILE* 3.2 10.1 + - + +
1076M GLU* 1.3 76.3 - - - +
1078M LEU* 1.3 60.1 + - + +
1080M LYS* 3.3 21.7 + - + +
1081M HIS* 2.9 50.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU1078 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1074M ILE* 2.9 30.6 + - + +
1075M LEU* 3.7 3.1 - - + +
1077M LYS* 1.3 78.3 - - + +
1079M GLU* 1.3 57.9 + - - +
1081M HIS* 4.5 10.3 - - + +
1082M ALA* 2.9 30.4 + - - +
1104M PRO* 4.6 3.7 - - + +
1107M ARG* 3.8 41.1 - - + +
1108M LEU* 3.7 29.9 - - + +
1111M LYS* 3.7 38.1 - - + -
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Residues in contact with GLU1079 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1075M LEU* 2.9 26.1 + - + +
1076M GLU* 3.1 16.4 + - - +
1078M LEU* 1.3 76.8 - - - +
1080M LYS* 1.3 61.0 + - + +
1082M ALA* 3.8 5.0 - - - +
1083M THR* 2.8 35.4 + - - +
1108M LEU* 5.1 11.2 - - + -
----------------------------------------------------------
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Residues in contact with LYS1080 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1073M GLU* 5.4 1.0 + - - -
1076M GLU* 2.9 44.0 + - - +
1077M LYS* 3.3 24.8 + - + +
1079M GLU* 1.3 77.4 - - + +
1081M HIS* 1.3 65.9 + - + +
1083M THR* 3.4 5.0 + - - -
1084M ALA* 2.9 28.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS1081 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1077M LYS* 2.9 35.5 + - + +
1078M LEU* 4.4 10.7 - - + +
1080M LYS* 1.3 80.2 - - + +
1082M ALA* 1.3 61.5 + - - +
1084M ALA* 3.3 9.7 + - + +
1085M TYR* 2.9 22.9 + - - +
1104M PRO* 3.5 26.9 - - + +
1107M ARG* 5.5 6.5 + - - -
----------------------------------------------------------
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Residues in contact with ALA1082 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1078M LEU 2.9 23.4 + - - +
1079M GLU* 3.8 6.7 - - - +
1081M HIS* 1.3 77.0 - - - +
1083M THR* 1.3 58.0 + - - +
1085M TYR* 3.2 4.2 + - - +
1086M ARG* 2.9 39.3 + - - +
1104M PRO* 3.7 13.4 - - + +
1105M LEU* 4.1 19.5 - - + +
1108M LEU* 4.2 13.5 - - + -
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Residues in contact with THR1083 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1079M GLU* 2.8 21.2 + - - +
1080M LYS* 3.8 5.2 - - - -
1082M ALA* 1.3 76.5 - - - +
1084M ALA* 1.3 58.5 + - - +
1086M ARG* 2.7 34.5 + - + +
1087M ALA* 2.9 31.0 + - + +
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Residues in contact with ALA1084 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1080M LYS 2.9 17.6 + - - +
1081M HIS* 3.6 12.1 - - + +
1082M ALA 3.3 0.2 - - - -
1083M THR* 1.3 76.9 - - - +
1085M TYR* 1.3 60.3 + - - +
1087M ALA* 3.7 7.4 + - - +
1088M LYS* 3.6 29.1 + - - +
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Residues in contact with TYR1085 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1081M HIS 2.9 16.5 + - - +
1082M ALA* 3.6 4.3 - - - +
1084M ALA* 1.3 77.2 - - - +
1086M ARG* 1.3 61.5 + - - +
1088M LYS* 3.2 10.5 + - + +
1089M LEU* 2.9 39.8 + - + +
1094M ILE* 3.4 30.1 - - + +
1100M PRO* 3.8 20.5 - - + +
1102M ASP 5.4 0.9 - - - -
1103M ASN* 3.2 42.2 + - + +
1104M PRO* 3.8 17.5 - - + -
1105M LEU* 3.8 31.0 - - + -
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Residues in contact with ARG1086 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1079M GLU 4.8 0.2 + - - -
1082M ALA* 2.9 18.3 + - - +
1083M THR* 2.7 46.2 + - + +
1085M TYR* 1.3 75.3 - - - +
1087M ALA* 1.3 59.8 + - - +
1089M LEU* 3.6 12.5 - - + +
1090M LYS* 2.8 51.7 + - - +
1105M LEU* 4.3 25.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA1087 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1083M THR* 2.9 18.5 + - + +
1084M ALA* 3.8 8.7 - - - +
1085M TYR 3.2 0.4 - - - -
1086M ARG* 1.3 76.6 - - - +
1088M LYS* 1.3 61.4 + - + +
1089M LEU 3.7 0.2 + - - -
1090M LYS* 3.8 12.9 - - - +
1091M SER* 3.7 18.5 + - - -
----------------------------------------------------------
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Residues in contact with LYS1088 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1084M ALA* 3.6 14.1 + - - +
1085M TYR* 3.2 13.1 + - + +
1086M ARG 3.2 0.2 - - - -
1087M ALA* 1.3 78.3 - - + +
1089M LEU* 1.3 61.4 + - - +
1091M SER* 2.9 18.9 + - - -
1093M GLU* 3.9 30.7 + - + +
1094M ILE* 3.9 14.4 - - + +
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Residues in contact with LEU1089 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1085M TYR* 2.9 35.0 + - + +
1086M ARG* 3.1 13.2 + - + +
1088M LYS* 1.3 77.7 - - - +
1090M LYS* 1.3 60.5 + - - +
1091M SER 3.2 5.6 + - - -
1092M GLY* 3.9 8.0 + - - -
1093M GLU 5.2 0.2 + - - -
1094M ILE* 3.8 35.4 - - + +
1105M LEU* 4.4 13.2 - - + -
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Residues in contact with LYS1090 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086M ARG* 2.8 53.1 + - - +
1087M ALA* 3.8 12.5 - - - +
1089M LEU* 1.3 75.1 - - - +
1091M SER* 1.3 64.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il