Contacts of the helix formed by residues 216 - 273 (chain B) in PDB entry 6H7L
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 216 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ILE* 4.1 4.7 - - + -
212B SER 2.9 12.5 + - - +
214B ILE 3.5 0.8 - - - -
215B SER* 1.3 79.6 - - - +
217B TYR* 1.3 92.4 + + - +
218B ILE 3.6 0.9 - - - -
219B PRO* 3.5 5.0 - - - +
220B LEU* 2.8 46.1 + - + +
299B PHE* 3.6 27.8 - + - -
300B THR* 5.2 2.7 - - + -
303B TRP* 3.5 29.6 - - + -
304B LEU* 3.6 39.3 - - + -
307B PHE* 3.6 32.8 - + + -
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Residues in contact with TYR 217 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212B SER* 3.1 37.8 + - - -
213B ILE* 3.3 21.5 + - + -
216B PHE* 1.3 103.1 - + - +
218B ILE* 1.3 60.9 + - - +
220B LEU* 3.3 10.9 + - + +
221B LEU* 2.9 37.6 + - + +
304B LEU* 4.5 8.1 - - + -
307B PHE* 2.9 33.2 + - + -
308B LEU* 3.4 19.9 + - + +
311B ILE* 4.1 12.0 - - + +
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Residues in contact with ILE 218 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213B ILE* 2.9 40.3 + - + +
214B ILE* 4.9 10.1 - - + -
217B TYR* 1.3 70.3 - - - +
219B PRO* 1.4 73.0 - - + +
221B LEU* 3.2 9.9 + - + +
222B ILE* 2.9 44.0 + - + +
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Residues in contact with PRO 219 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ILE* 3.7 18.8 - - + -
130B GLU* 3.9 18.2 - - + -
133B CYS* 3.9 23.3 - - + -
213B ILE 3.7 1.6 - - - +
214B ILE 3.6 18.4 - - - +
215B SER 3.6 16.6 - - - +
216B PHE 3.5 9.2 - - - +
218B ILE* 1.4 97.4 - - + +
220B LEU* 1.3 56.3 + - - +
222B ILE* 3.4 1.6 + - - +
223B MET* 2.8 37.3 + - - +
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Residues in contact with LEU 220 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 2.8 46.8 + - + +
217B TYR* 3.5 14.4 - - + +
219B PRO* 1.3 72.2 - - - +
221B LEU* 1.3 63.1 + - + +
223B MET* 3.2 3.8 + - - +
224B ILE* 2.9 55.1 + - + +
296B MET* 4.1 7.0 - - + -
299B PHE* 3.7 27.8 - - + -
300B THR* 3.9 20.2 - - + +
304B LEU* 4.8 8.3 - - + -
403B 2CV 6.1 1.1 - - + -
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Residues in contact with LEU 221 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217B TYR* 2.9 27.2 + - + +
218B ILE* 3.7 9.2 - - + +
220B LEU* 1.3 76.4 - - + +
222B ILE* 1.3 58.7 + - + +
224B ILE* 3.3 18.9 + - + +
225B PHE* 2.9 31.4 + - - +
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Residues in contact with ILE 222 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B CYS* 3.5 32.1 - - - +
136B ALA* 6.0 0.2 - - + -
137B ILE* 3.8 27.8 - - + -
218B ILE* 2.9 38.2 + - + +
221B LEU* 1.3 76.5 - - + +
223B MET* 1.3 58.1 + - - +
225B PHE* 3.4 7.3 + - + +
226B VAL* 2.9 41.4 + - + +
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Residues in contact with MET 223 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ILE 4.8 0.9 - - - +
132B LEU* 4.2 17.5 - - + +
133B CYS* 3.7 30.7 - - - -
136B ALA* 4.1 12.6 - - + -
219B PRO* 2.8 23.1 + - - +
220B LEU* 3.2 4.5 + - - +
222B ILE* 1.3 76.8 - - - +
224B ILE* 1.3 58.7 + - - +
227B TYR* 3.1 42.7 + - + +
295B ILE* 4.8 2.2 - - + -
296B MET* 4.0 22.4 - - + +
299B PHE* 3.6 48.5 - - + -
343B TYR* 4.6 8.5 - - - +
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Residues in contact with ILE 224 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220B LEU* 2.9 44.0 + - + +
221B LEU* 3.7 20.0 - - + +
223B MET* 1.3 72.1 - - - +
225B PHE* 1.3 62.9 + - - +
227B TYR* 3.9 0.8 - - - -
228B LEU* 2.9 44.4 + - + +
296B MET* 3.7 22.9 - - + -
403B 2CV 5.7 4.7 - - + -
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Residues in contact with PHE 225 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221B LEU 2.9 17.4 + - - +
222B ILE* 3.8 6.5 - - + +
224B ILE* 1.3 79.3 - - - +
226B VAL* 1.3 74.4 + - + +
228B LEU* 3.4 10.8 + - + +
229B ARG* 3.1 66.5 + - + +
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Residues in contact with VAL 226 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136B ALA* 3.3 35.0 - - + +
137B ILE* 4.0 12.6 - - + +
140B TYR* 3.3 31.8 - - + -
222B ILE* 2.9 40.4 + - + +
223B MET* 4.3 3.1 - - - +
225B PHE* 1.3 85.7 - - + +
227B TYR* 1.3 61.9 + - + +
229B ARG* 3.0 23.8 + - - +
230B VAL 3.2 8.8 + - - -
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Residues in contact with TYR 227 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B LEU 5.0 0.6 + - - -
135B ILE 4.4 1.9 + - - -
136B ALA* 3.3 44.6 + - + +
139B ARG* 5.1 4.0 - - + +
223B MET* 3.1 28.9 + - + +
224B ILE* 4.5 0.9 - - - +
226B VAL* 1.3 79.9 - - + +
228B LEU* 1.3 60.6 + - - +
230B VAL* 3.6 16.7 + - + +
231B TYR* 3.2 20.1 + - - +
292B LEU* 3.5 34.6 - - + +
295B ILE* 3.7 28.0 - - + +
296B MET* 3.9 21.5 - - + -
343B TYR* 4.5 5.0 + - - -
103D ILE* 3.8 25.5 - - + +
104D ILE* 4.1 13.9 - - - +
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Residues in contact with LEU 228 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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224B ILE* 2.9 30.9 + - + +
225B PHE* 3.5 11.7 - - + +
227B TYR* 1.3 74.9 - - - +
229B ARG* 1.3 56.0 + - + +
231B TYR* 3.1 19.9 + - + +
232B ARG* 2.8 73.7 + - + +
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Residues in contact with ARG 229 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B TYR* 3.1 44.2 + - + +
225B PHE* 3.1 54.3 + - + +
226B VAL* 3.0 10.5 + - - +
228B LEU* 1.3 78.7 - - + +
230B VAL* 1.3 50.6 + - - +
232B ARG* 3.8 15.8 - - + +
233B GLU* 2.8 40.1 + - - +
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Residues in contact with VAL 230 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B TYR* 3.6 36.5 - - + -
143B ILE* 4.8 11.2 - - + -
144B THR* 4.7 6.7 - - + -
226B VAL 3.2 8.3 + - - +
227B TYR* 3.7 23.8 - - + +
228B LEU 3.2 0.2 - - - -
229B ARG* 1.3 71.7 - - - +
231B TYR* 1.3 68.0 + - - +
233B GLU* 3.4 6.0 + - - +
234B ALA* 3.0 25.2 + - + +
292B LEU* 5.6 4.7 - - + -
29D PHE* 5.4 2.7 - - + -
31D LEU* 4.0 16.9 - - + +
103D ILE* 4.6 20.9 - - + -
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Residues in contact with TYR 231 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227B TYR 3.2 10.3 + - - +
228B LEU* 3.1 21.6 + - + +
230B VAL* 1.3 80.5 - - - +
232B ARG* 1.3 68.3 + - + +
234B ALA* 3.4 5.8 + - + +
235B LYS* 2.9 69.0 + - + +
289B LEU* 3.5 36.5 - - + +
292B LEU* 4.2 13.9 - - + +
403B 2CV 6.0 1.3 - - - -
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Residues in contact with ARG 232 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228B LEU* 2.8 55.3 + - + +
229B ARG* 3.8 14.5 - - - +
231B TYR* 1.3 82.4 - - + +
233B GLU* 1.3 54.0 + - - +
235B LYS* 3.4 4.0 + - - +
236B GLU* 2.7 39.3 + - - +
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Residues in contact with GLU 233 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140B TYR* 5.9 3.1 - - - -
144B THR* 4.2 32.0 - - + +
229B ARG* 2.8 24.1 + - - +
230B VAL 3.7 4.5 - - - +
232B ARG* 1.3 73.6 - - - +
234B ALA* 1.3 58.8 + - - +
236B GLU* 3.8 17.4 - - - +
237B GLN* 2.9 29.8 + - - +
31D LEU* 4.2 13.9 - - + -
52D HIS* 6.3 0.9 - - + -
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Residues in contact with ALA 234 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230B VAL 3.0 18.6 + - - +
231B TYR* 3.7 6.5 - - + +
233B GLU* 1.3 74.5 - - - +
235B LYS* 1.3 64.2 + - - +
237B GLN* 3.4 1.5 + - - -
238B ILE* 3.1 31.2 + - + +
29D PHE* 3.9 30.1 - - + -
30D ALA* 3.7 7.1 - - + +
31D LEU* 4.0 16.3 - - + +
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Residues in contact with LYS 235 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231B TYR* 2.9 54.2 + - + +
232B ARG* 3.9 4.9 - - - +
234B ALA* 1.3 76.9 - - - +
236B GLU* 1.3 57.6 + - - +
238B ILE* 3.4 12.9 + - + +
239B ARG* 3.1 26.7 + - + +
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Residues in contact with GLU 236 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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232B ARG 2.7 22.8 + - - +
233B GLU* 3.8 21.2 - - - +
235B LYS* 1.3 73.6 - - - +
237B GLN* 1.3 60.1 + - - +
239B ARG* 3.5 21.5 + - - +
240B LYS* 2.7 56.9 + - - +
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Residues in contact with GLN 237 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233B GLU 2.9 18.4 + - - +
234B ALA* 3.8 5.4 - - - +
235B LYS 3.3 0.2 - - - -
236B GLU* 1.3 75.6 - - - +
238B ILE* 1.3 63.4 + - - +
239B ARG 3.2 0.4 - - - -
240B LYS* 3.2 24.4 + - - +
241B ILE* 3.1 37.8 + - + +
30D ALA* 3.7 27.6 - - + +
31D LEU* 4.7 4.3 - - + -
53D SER* 3.2 37.6 + - - +
54D GLY* 4.3 6.1 - - - +
71D ARG* 6.2 0.6 - - - +
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Residues in contact with ILE 238 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234B ALA* 3.1 20.9 + - + +
235B LYS* 3.4 11.9 + - + +
237B GLN* 1.3 74.4 - - - +
239B ARG* 1.3 63.2 + - - +
241B ILE* 3.4 12.9 + - + +
242B ASP* 3.2 34.2 + - - +
281B MET* 5.8 6.7 - - + -
285B GLU* 3.7 33.2 - - + +
30D ALA* 3.6 14.6 - - + -
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Residues in contact with ARG 239 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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235B LYS* 3.1 15.0 + - + +
236B GLU* 3.5 21.8 + - - +
237B GLN 3.2 0.2 - - - -
238B ILE* 1.3 77.4 - - - +
240B LYS* 1.3 85.2 + - - +
242B ASP* 3.3 10.6 + - + +
243B ARG* 3.2 54.2 + - - +
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Residues in contact with LYS 240 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236B GLU* 2.7 46.4 + - - +
237B GLN* 3.2 26.7 + - - +
239B ARG* 1.3 97.0 - - - +
241B ILE* 1.3 56.7 + - - +
243B ARG* 3.5 18.0 + - - +
272B ALA* 3.1 25.5 + - - +
73D ASN* 5.3 0.4 - - - +
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Residues in contact with ILE 241 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237B GLN* 3.1 34.7 + - + +
238B ILE* 3.7 15.9 - - + +
239B ARG 3.3 0.4 - - - -
240B LYS* 1.3 75.0 - - - +
242B ASP* 1.3 67.4 + - - +
272B ALA* 3.4 4.3 + - - +
273B SER* 3.3 21.6 + - - +
30D ALA* 5.0 12.3 - - + +
73D ASN 3.9 16.1 - - - +
74D ALA* 3.6 23.1 - - - +
76D ASN* 5.7 4.7 - - - +
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Residues in contact with ASP 242 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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238B ILE* 3.2 27.8 - - - +
239B ARG* 3.3 10.9 + - - +
241B ILE* 1.3 81.5 - - - +
243B ARG* 1.3 63.6 + - - +
273B SER* 3.4 23.0 + - - +
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Residues in contact with ARG 243 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239B ARG* 3.2 43.2 + - - +
240B LYS* 3.6 19.1 - - - +
241B ILE 3.4 0.2 - - - -
242B ASP* 1.3 77.2 - - - +
272B ALA* 1.3 61.6 + - - +
273B SER 4.3 3.5 - - - -
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Residues in contact with ALA 272 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240B LYS 3.1 12.5 + - - +
241B ILE 3.4 10.3 - - - +
242B ASP 3.2 0.2 - - - -
243B ARG* 1.3 75.4 - - - +
273B SER* 1.3 63.1 + - - +
73D ASN* 3.5 52.5 + - + +
74D ALA* 3.6 7.1 - - - +
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Residues in contact with SER 273 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241B ILE* 3.3 11.8 + - - +
242B ASP* 3.5 20.4 + - - -
243B ARG 3.4 4.2 - - - -
272B ALA* 1.3 82.2 - - - +
74D ALA* 4.3 14.6 - - - +
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Residues in contact with MET 281 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238B ILE* 5.8 5.8 - - + -
282B ALA* 1.3 62.5 + - - +
285B GLU* 4.2 19.5 - - + +
286B HIS* 3.1 61.2 + - + +
289B LEU* 4.1 25.4 - - + -
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Residues in contact with ALA 282 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281B MET* 1.3 73.3 - - - +
283B MET* 1.3 66.4 + - - +
284B LYS 3.3 0.7 - - - -
285B GLU* 3.2 22.7 + - - +
286B HIS* 3.1 27.1 + - - -
27D SER* 3.3 20.6 - - - +
28D ILE 5.2 2.5 - - - +
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Residues in contact with MET 283 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282B ALA* 1.3 74.5 - - - +
284B LYS* 1.3 70.6 - - + +
286B HIS* 3.4 9.5 + - - +
287B LYS* 3.1 41.8 + - + +
27D SER* 3.7 16.3 - - - +
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Residues in contact with LYS 284 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282B ALA 3.3 0.6 - - - -
283B MET* 1.3 84.4 - - + +
285B GLU* 1.3 63.3 + - - +
287B LYS* 3.9 30.6 + - - +
288B ALA* 3.1 29.3 + - - +
2D VAL* 4.2 1.4 - - - +
27D SER* 2.7 41.7 + - - +
29D PHE* 3.6 24.2 - - + +
99D ASP* 2.7 33.1 + - - +
101D GLY 4.4 0.3 - - - +
107D TYR* 6.1 0.9 - - - -
109D TYR* 2.7 30.6 + - - -
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Residues in contact with GLU 285 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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238B ILE* 3.7 31.6 - - + +
281B MET* 4.2 22.7 - - + +
282B ALA* 3.2 33.2 + - - +
284B LYS* 1.3 75.3 - - - +
286B HIS* 1.3 63.7 + - - +
288B ALA* 4.0 1.2 - - - +
289B LEU* 3.3 23.9 + - - +
28D ILE 3.6 15.4 - - - +
29D PHE* 4.0 18.3 - - + -
30D ALA* 3.4 22.6 + - - +
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Residues in contact with HIS 286 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281B MET* 3.1 57.5 + - + +
282B ALA 3.1 21.2 + - - -
283B MET* 3.8 9.0 + - - +
285B GLU* 1.3 76.5 - - - +
287B LYS* 1.3 57.4 + - - +
289B LEU* 3.2 5.0 + - - +
290B LYS* 3.0 28.5 + - - +
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Residues in contact with LYS 287 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283B MET* 3.1 30.4 + - + +
284B LYS* 3.9 29.3 + - - +
286B HIS* 1.3 80.5 - - - +
288B ALA* 1.3 55.3 + - - +
290B LYS* 3.4 24.0 + - - +
291B THR* 3.0 35.8 + - - +
101D GLY* 3.3 34.5 + - - +
102D ALA* 3.9 8.5 - - + +
105D TYR* 6.1 0.7 - - - +
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Residues in contact with ALA 288 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284B LYS 3.1 11.3 + - - +
285B GLU 4.0 2.0 - - - +
286B HIS 3.3 0.2 - - - -
287B LYS* 1.3 75.9 - - - +
289B LEU* 1.3 58.4 + - - +
291B THR* 3.7 4.5 - - - -
292B LEU* 3.0 27.4 + - - +
29D PHE* 3.4 37.7 - - + -
101D GLY 3.2 24.0 + - - +
103D ILE* 4.3 10.1 - - + +
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Residues in contact with LEU 289 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231B TYR* 3.5 40.4 - - + +
281B MET* 4.1 24.0 - - + -
285B GLU 3.3 14.4 + - - +
286B HIS* 3.2 5.1 + - - +
287B LYS 3.2 0.4 - - - -
288B ALA* 1.3 77.8 - - - +
290B LYS* 1.3 59.5 + - - +
292B LEU* 3.5 13.0 + - + +
293B GLY* 3.0 23.0 + - - -
403B 2CV 4.3 29.5 - - - +
----------------------------------------------------------
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Residues in contact with LYS 290 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286B HIS 3.0 13.0 + - - +
287B LYS* 3.6 28.6 + - - +
289B LEU* 1.3 74.1 - - - +
291B THR* 1.3 78.4 + - - +
293B GLY* 3.0 4.1 + - - -
294B ILE* 2.8 49.1 + - + +
403B 2CV 5.9 1.3 - - - -
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Residues in contact with THR 291 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287B LYS* 3.0 22.6 + - - +
288B ALA* 3.7 8.0 - - - -
289B LEU 3.4 0.2 - - - -
290B LYS* 1.3 89.3 + - - +
292B LEU* 1.3 57.1 + - - +
294B ILE* 3.2 9.1 + - - +
295B ILE* 2.9 51.7 + - + +
342B ILE* 6.2 1.1 - - + -
101D GLY 4.8 1.2 + - - -
102D ALA* 3.4 28.2 + - - +
103D ILE* 3.8 5.4 - - + -
104D ILE* 5.1 2.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 292 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227B TYR* 3.5 59.9 - - + +
230B VAL* 5.6 4.7 - - + -
231B TYR* 4.2 24.0 - - + +
288B ALA 3.0 17.9 + - - +
289B LEU* 3.7 11.9 - - + +
291B THR* 1.3 76.2 - - - +
293B GLY* 1.3 61.5 + - - +
295B ILE* 4.4 7.9 - - + -
296B MET* 3.2 28.4 + - + +
403B 2CV 4.5 19.1 - - - +
103D ILE* 5.0 9.8 - - + +
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Residues in contact with GLY 293 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289B LEU 3.0 9.4 + - - -
290B LYS* 3.0 8.4 + - - -
292B LEU* 1.3 75.5 - - - +
294B ILE* 1.3 55.8 + - - +
296B MET* 4.4 0.2 - - - +
297B GLY* 2.6 36.6 + - - -
403B 2CV 3.1 36.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 294 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B LYS* 2.8 46.2 + - + +
291B THR* 3.8 8.1 - - - +
293B GLY* 1.3 70.4 - - - +
295B ILE* 1.3 66.7 + - - +
297B GLY* 4.5 0.4 - - - +
298B VAL* 3.0 42.2 + - + +
338B MET* 6.2 0.9 - - + -
342B ILE* 4.1 25.1 - - + +
----------------------------------------------------------
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Residues in contact with ILE 295 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223B MET* 4.8 2.4 - - + +
227B TYR* 3.7 33.2 - - + +
291B THR* 2.9 42.7 + - + +
292B LEU* 4.0 8.3 - - + +
293B GLY 3.3 0.4 - - - -
294B ILE* 1.3 79.0 - - - +
296B MET* 1.3 64.2 + - + +
299B PHE* 3.4 21.8 + - - +
342B ILE* 3.9 26.7 - - + +
343B TYR* 3.5 21.0 + - - +
103D ILE* 4.4 10.3 - - + -
104D ILE* 3.7 24.9 - - + -
----------------------------------------------------------
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Residues in contact with MET 296 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220B LEU* 4.1 15.7 - - + -
223B MET* 4.0 23.6 - - + +
224B ILE* 3.7 37.7 - - + +
227B TYR* 3.9 35.0 - - + -
292B LEU* 3.2 19.4 + - + +
295B ILE* 1.3 76.3 - - + +
297B GLY* 1.3 63.7 + - - +
299B PHE* 4.2 2.0 - - + +
300B THR* 2.7 35.4 + - - +
403B 2CV 4.4 30.9 - - + +
----------------------------------------------------------
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Residues in contact with GLY 297 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293B GLY 2.6 24.0 + - - -
294B ILE* 4.9 0.2 - - - -
296B MET* 1.3 74.1 - - - +
298B VAL* 1.3 52.8 + - - +
300B THR* 3.3 1.0 + - - -
301B LEU* 2.7 38.8 + - - +
403B 2CV 4.2 16.3 - - - +
----------------------------------------------------------
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Residues in contact with VAL 298 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294B ILE* 3.0 34.0 + - + +
297B GLY* 1.3 71.9 - - - +
299B PHE* 1.3 65.8 + - - +
301B LEU* 4.5 9.2 - - + -
302B CYS* 3.0 32.6 + - - +
335B ASN* 3.9 7.9 - - - +
338B MET* 3.8 43.7 - - + -
342B ILE* 4.2 8.3 - - + -
----------------------------------------------------------
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Residues in contact with PHE 299 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B ILE* 3.4 42.6 - - + -
132B LEU* 3.7 22.4 - - + -
216B PHE* 3.6 24.7 - + - -
220B LEU* 3.7 29.6 - - + -
223B MET* 3.6 34.8 - - + -
295B ILE 3.4 19.3 + - - +
296B MET* 4.2 3.8 - - + +
297B GLY 3.4 0.2 - - - -
298B VAL* 1.3 78.9 - - - +
300B THR* 1.3 66.1 + - - +
302B CYS* 4.0 1.4 - - - +
303B TRP* 3.2 27.8 + + - +
335B ASN* 4.2 16.0 - - - +
342B ILE* 5.7 0.6 - - - +
343B TYR* 5.6 1.3 - - - +
----------------------------------------------------------
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Residues in contact with THR 300 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 5.2 2.2 - - + -
220B LEU* 3.9 24.6 - - + +
296B MET* 2.7 24.7 + - - +
297B GLY 4.0 0.9 - - - -
299B PHE* 1.3 81.3 - - - +
301B LEU* 1.3 67.4 + - - +
304B LEU* 2.8 62.5 + - + +
403B 2CV 4.3 23.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 301 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297B GLY 2.7 22.7 + - - +
298B VAL* 4.0 10.3 - - + +
300B THR* 1.3 71.9 - - - +
302B CYS* 1.3 64.0 + - - +
305B PRO* 3.0 31.4 - - + +
331B LEU* 3.4 18.9 - - + +
----------------------------------------------------------
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Residues in contact with CYS 302 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298B VAL* 3.0 35.8 + - - +
299B PHE 4.0 1.6 - - - +
301B LEU* 1.3 85.0 - - - +
303B TRP* 1.3 59.7 + - - +
305B PRO* 4.1 2.1 - - - +
306B PHE 5.0 0.7 + - - -
328B PHE 4.0 4.7 - - - +
331B LEU* 3.5 41.5 - - - +
332B GLY* 3.3 19.4 + - - -
334B ALA* 4.6 3.6 - - - -
335B ASN* 3.7 33.0 - - + -
338B MET* 4.9 2.9 - - - -
----------------------------------------------------------
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Residues in contact with TRP 303 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B VAL* 3.7 34.8 - - + -
128B SER* 5.8 2.6 + - - -
129B ILE* 3.6 28.8 - - + +
216B PHE* 3.5 23.6 - - + -
299B PHE* 3.2 14.8 + + + +
302B CYS* 1.3 75.2 - - - +
304B LEU* 1.3 66.2 + - - +
305B PRO* 3.5 1.1 - - - -
306B PHE* 3.7 23.6 + + + +
307B PHE* 3.2 51.3 + + - +
329B ASN* 4.0 19.5 - - - -
332B GLY* 3.2 43.2 + - - -
333B TYR* 3.9 3.6 - + - -
335B ASN* 3.7 27.7 + - + +
336B SER* 5.6 3.1 + - - -
405B Y00 5.4 0.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 304 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 3.6 26.2 - - + -
217B TYR* 4.5 6.3 - - + -
220B LEU* 4.8 6.7 - - + -
300B THR* 2.8 48.0 + - + +
303B TRP* 1.3 69.1 - - - +
305B PRO* 1.4 66.7 - - + +
307B PHE 3.5 0.2 + - - -
308B LEU* 2.9 55.5 + - + +
----------------------------------------------------------
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Residues in contact with PRO 305 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300B THR 3.5 0.7 - - - +
301B LEU* 3.0 30.1 - - + +
302B CYS 4.1 2.0 - - - -
303B TRP 3.6 2.7 - - - -
304B LEU* 1.4 95.7 - - + +
306B PHE* 1.3 63.0 + - - +
308B LEU* 3.5 7.6 - - + +
309B VAL* 3.0 27.4 + - + +
328B PHE* 3.8 36.8 - - + -
331B LEU* 4.2 9.6 - - + -
----------------------------------------------------------
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Residues in contact with PHE 306 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201B PHE* 5.2 0.4 - + - -
302B CYS 5.0 0.4 + - - +
303B TRP* 3.7 18.5 + + + +
304B LEU 3.4 0.2 - - - -
305B PRO* 1.3 79.5 - - - +
307B PHE* 1.3 85.1 + + - +
309B VAL* 3.3 4.9 + - - +
310B ASN* 2.8 33.1 + - - +
325B PHE* 3.6 40.6 - + - -
328B PHE* 3.5 27.8 + - - +
329B ASN* 3.1 47.3 - - + -
405B Y00 3.7 37.7 - + + -
----------------------------------------------------------
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Residues in contact with PHE 307 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B VAL* 4.2 4.0 - - + -
129B ILE* 4.0 6.3 - - + -
212B SER* 3.5 34.3 + - - -
215B SER* 4.1 11.7 - - - -
216B PHE* 3.6 40.8 - + + -
217B TYR* 2.9 14.2 + - + +
303B TRP* 3.2 56.1 + + - +
306B PHE* 1.3 88.3 - + - +
308B LEU* 1.3 65.5 + - - +
310B ASN* 3.9 4.1 - - - +
311B ILE* 3.6 18.0 + - - +
405B Y00 3.8 40.6 - + - -
----------------------------------------------------------
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Residues in contact with LEU 308 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217B TYR* 3.4 16.7 + - + +
304B LEU* 2.9 42.3 + - + +
305B PRO* 3.5 6.7 - - + +
307B PHE* 1.3 77.5 - - - +
309B VAL* 1.3 64.0 + - + +
311B ILE* 3.2 8.4 + - - +
312B VAL* 3.1 28.9 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il