Contacts of the helix formed by residues 1304 - 1344 (chain A) in PDB entry 6J8H
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE1304 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1199A VAL* 4.2 23.8 - - + -
1202A ILE* 6.4 0.2 - - + -
1203A LEU* 4.2 29.8 - - + -
1300A ALA* 3.5 26.1 + - + -
1301A LEU 3.6 2.5 + - - +
1302A SER 3.5 0.6 - - - -
1303A ARG* 1.3 79.9 - - + +
1305A GLU* 1.3 72.9 + - - +
1306A GLY 4.5 1.3 - - - +
1307A MET* 2.8 42.0 - - + +
1308A ARG* 3.1 25.7 + - - +
1649A LEU* 4.9 10.8 - - + -
1653A LEU* 6.2 0.2 - - + -
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Residues in contact with GLU1305 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1303A ARG 3.6 6.6 + - - +
1304A PHE* 1.3 80.0 - - - +
1306A GLY* 1.3 70.2 + - - +
1308A ARG* 3.5 20.0 + - - +
1309A VAL* 3.3 19.6 + - - +
1475A THR* 3.6 27.1 - - + +
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Residues in contact with GLY1306 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1304A PHE* 3.3 2.2 - - - +
1305A GLU* 1.3 86.0 - - - +
1307A MET* 1.3 61.1 + - - +
1309A VAL* 3.3 20.6 - - - +
1310A VAL* 3.6 2.9 + - - +
1475A THR* 3.3 18.6 - - - -
1478A GLN* 4.9 0.2 - - - -
1646A ASN* 3.8 26.1 - - - +
1649A LEU* 6.1 0.9 - - - -
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Residues in contact with MET1307 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1300A ALA 3.9 10.5 - - - +
1301A LEU* 3.8 14.1 - - + +
1304A PHE* 2.8 51.9 + - + +
1305A GLU 3.4 0.2 - - - -
1306A GLY* 1.3 75.8 - - - +
1308A ARG* 1.3 63.5 + - - +
1310A VAL* 3.4 6.4 + - - +
1311A VAL* 3.3 25.8 + - - +
1646A ASN 5.0 5.8 + - - -
1649A LEU* 3.8 41.1 - - + +
1650A LEU* 3.6 28.2 - - + +
1653A LEU* 4.3 20.6 - - + -
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Residues in contact with ARG1308 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1258A TRP* 3.6 38.8 - - + +
1301A LEU 4.0 8.7 + - - +
1302A SER 3.2 23.7 + - - -
1303A ARG 4.8 0.8 + - - -
1304A PHE 3.1 15.9 + - - +
1305A GLU* 3.7 18.4 - - - +
1306A GLY 3.3 0.2 - - - -
1307A MET* 1.3 77.5 - - - +
1309A VAL* 1.3 65.2 + - - +
1311A VAL* 3.3 7.6 + - - +
1312A ASN* 3.0 35.2 + - - +
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Residues in contact with VAL1309 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1305A GLU 3.3 10.8 + - - +
1306A GLY 3.3 15.9 - - - +
1308A ARG* 1.3 78.4 - - - +
1310A VAL* 1.3 68.3 + - + +
1312A ASN* 3.3 22.2 + - + +
1313A ALA* 3.4 9.0 + - - +
1472A ILE* 3.9 19.9 - - - +
1473A PHE 3.9 26.7 - - - +
1474A MET 4.0 22.2 - - - +
1475A THR* 4.5 3.8 - - + +
1646A ASN* 4.4 1.8 - - - +
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Residues in contact with VAL1310 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1306A GLY 3.8 3.4 - - - +
1307A MET 3.4 8.0 + - - +
1308A ARG 3.3 0.4 - - - -
1309A VAL* 1.3 85.3 - - + +
1311A VAL* 1.3 62.9 + - - +
1313A ALA* 3.2 16.8 + - - +
1314A LEU* 3.4 19.0 + - + +
1473A PHE* 4.4 11.2 - - + +
1646A ASN* 3.6 39.3 - - + +
1647A ILE* 4.0 22.4 - - + +
1650A LEU* 4.2 23.8 - - + -
1750A VAL* 6.0 2.5 - - + -
1753A ASN* 4.5 12.3 - - - +
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Residues in contact with VAL1311 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1258A TRP* 4.0 24.5 - - + -
1301A LEU* 3.6 28.9 - - + -
1307A MET 3.3 14.7 + - - +
1308A ARG* 3.3 9.8 + - - +
1310A VAL* 1.3 73.8 - - - +
1312A ASN* 1.3 66.8 + - - +
1314A LEU* 3.3 10.8 + - + +
1315A ILE* 3.2 35.2 + - + +
1650A LEU* 3.7 12.3 - - + -
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Residues in contact with ASN1312 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1258A TRP* 4.9 8.1 + - - -
1308A ARG* 3.0 38.6 + - - +
1309A VAL* 3.5 15.8 - - + +
1310A VAL 3.3 0.4 - - - -
1311A VAL* 1.3 78.9 - - - +
1313A ALA* 1.3 62.0 - - - +
1315A ILE* 3.4 7.5 + - - +
1316A GLY* 3.2 18.0 + - - -
1463A GLN* 4.6 1.6 - - - +
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Residues in contact with ALA1313 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1309A VAL 3.4 7.2 + - - +
1310A VAL 3.2 11.1 + - - +
1311A VAL 3.2 0.6 - - - -
1312A ASN* 1.3 80.6 - - - +
1314A LEU* 1.3 65.1 + - + +
1316A GLY 3.2 3.8 + - - -
1317A ALA* 3.3 4.0 + - - +
1460A PHE* 4.1 8.2 - - + -
1463A GLN* 3.1 31.0 + - - +
1472A ILE* 4.4 23.3 - - + +
1473A PHE* 4.4 20.2 - - + -
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Residues in contact with LEU1314 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1310A VAL* 3.4 16.2 + - + +
1311A VAL* 3.3 13.1 + - + +
1313A ALA* 1.3 78.0 - - - +
1315A ILE* 1.3 69.5 + - + +
1317A ALA* 3.0 14.0 + - + +
1318A ILE* 3.0 21.3 + - + +
1460A PHE* 4.4 7.6 - - + -
1650A LEU* 5.7 4.9 - - + -
1746A ILE* 6.4 1.8 - - + -
1749A LEU* 4.7 24.2 - - + +
1750A VAL* 4.7 19.3 - - + +
1753A ASN* 3.8 33.2 - - - +
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Residues in contact with ILE1315 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1311A VAL* 3.2 27.6 + - + +
1312A ASN* 3.8 10.1 - - - +
1313A ALA 3.3 0.2 - - - -
1314A LEU* 1.3 79.9 - - + +
1316A GLY* 1.3 64.2 + - - +
1317A ALA 3.3 0.3 + - - -
1318A ILE* 3.4 31.9 + - + +
1319A PRO* 3.5 9.5 - - - +
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Residues in contact with GLY1316 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1312A ASN 3.2 13.5 + - - -
1313A ALA 3.2 5.1 + - - -
1314A LEU 3.1 1.2 - - - -
1315A ILE* 1.3 79.2 - - - +
1317A ALA* 1.3 55.6 + - - +
1319A PRO* 3.5 16.5 - - - +
1320A SER* 5.4 0.2 - - - -
1459A ASN* 3.8 6.4 + - - +
1463A GLN* 3.8 16.6 - - - -
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Residues in contact with ALA1317 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1313A ALA 3.3 5.5 + - - +
1314A LEU* 3.0 9.8 + - + +
1316A GLY* 1.3 76.3 - - - +
1318A ILE* 1.3 56.9 + - - +
1319A PRO* 3.3 3.1 - - - -
1320A SER* 3.3 3.2 + - - -
1321A ILE* 2.8 45.5 + - + +
1456A ILE* 5.6 2.2 - - + -
1459A ASN* 2.7 27.1 - - + +
1460A PHE* 4.3 13.2 - - + -
1463A GLN* 4.0 7.2 - - - +
1749A LEU* 6.3 1.3 - - + -
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Residues in contact with ILE1318 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1314A LEU* 3.0 19.5 + - + +
1315A ILE* 3.5 30.1 - - + +
1317A ALA* 1.3 75.5 - - - +
1319A PRO* 1.3 82.9 - - + +
1321A ILE* 3.3 8.1 + - - +
1322A MET* 2.9 37.9 + - + +
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Residues in contact with PRO1319 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1315A ILE 3.5 8.1 - - - +
1316A GLY 3.5 13.7 - - - +
1317A ALA 3.4 0.4 - - - -
1318A ILE* 1.3 105.3 - - + +
1320A SER* 1.3 61.8 + - - +
1322A MET* 3.2 22.3 + - + +
1323A ASN* 3.4 13.2 + - - -
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Residues in contact with SER1320 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1317A ALA 3.3 1.5 + - - -
1318A ILE 3.3 0.6 - - - -
1319A PRO* 1.3 79.1 - - - +
1321A ILE* 1.3 68.0 + - - +
1323A ASN* 3.3 16.8 + - - +
1324A VAL* 3.5 14.0 + - - +
1455A VAL* 3.0 29.3 - - - +
1459A ASN* 3.6 32.1 - - - +
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Residues in contact with ILE1321 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1317A ALA* 2.8 38.5 + - + +
1318A ILE* 3.6 8.3 - - + +
1320A SER* 1.3 82.8 - - - +
1322A MET* 1.3 67.5 - - - +
1324A VAL* 3.3 7.2 + - + +
1325A LEU* 3.0 27.8 + - + +
1452A PHE* 4.6 15.2 - - + -
1455A VAL* 5.5 1.3 - - + -
1456A ILE* 3.0 41.7 - - + -
1749A LEU* 4.6 25.4 - - + -
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Residues in contact with MET1322 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1318A ILE* 2.9 24.4 + - + +
1319A PRO* 3.2 14.1 - - + +
1321A ILE* 1.3 83.8 - - - +
1323A ASN* 1.3 62.1 + - - +
1325A LEU* 3.3 19.9 + - + +
1326A LEU* 3.1 32.7 + - + +
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Residues in contact with ASN1323 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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849A TRP* 3.5 26.1 + - - -
850A PRO* 4.8 4.7 - - - +
851A THR* 3.5 18.7 + - - +
1319A PRO 3.4 10.8 + - - +
1320A SER* 3.3 11.9 + - - +
1321A ILE 3.2 0.8 - - - -
1322A MET* 1.3 80.5 - - - +
1324A VAL* 1.3 62.3 + - + +
1326A LEU* 3.2 13.5 + - - +
1327A VAL* 3.2 20.0 + - - +
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Residues in contact with VAL1324 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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851A THR* 4.6 6.5 - - + -
1320A SER 3.5 5.1 + - - +
1321A ILE* 3.3 9.7 + - + +
1323A ASN* 1.3 76.7 - - + +
1325A LEU* 1.3 62.4 + - - +
1327A VAL* 3.1 9.0 + - - +
1328A CYS* 2.9 23.8 + - - +
1451A LEU* 4.3 17.3 - - + +
1452A PHE* 3.7 42.2 - - + +
1455A VAL* 3.4 44.4 - - + -
1456A ILE* 6.2 0.4 - - + -
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Residues in contact with LEU1325 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1321A ILE* 3.0 23.2 + - + +
1322A MET* 3.5 23.8 - - + +
1323A ASN 3.2 0.2 - - - -
1324A VAL* 1.3 77.0 - - - +
1326A LEU* 1.3 58.4 + - + +
1328A CYS* 3.2 7.6 + - + +
1329A LEU* 2.8 54.5 + - + +
1452A PHE* 4.1 22.4 - - + -
1745A ILE* 5.8 10.1 - - + -
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Residues in contact with LEU1326 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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849A TRP* 3.4 35.2 - - + -
1322A MET* 3.1 23.5 + - + +
1323A ASN* 3.6 6.1 - - - +
1324A VAL 3.2 0.2 - - - -
1325A LEU* 1.3 80.0 - - + +
1327A VAL* 1.3 61.7 + - - +
1329A LEU* 3.3 14.9 + - + +
1330A ILE* 3.0 37.8 + - + +
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Residues in contact with VAL1327 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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849A TRP* 4.1 13.7 - - + -
851A THR* 3.1 37.7 - - + -
852A LEU* 3.1 39.2 - - + +
855A LEU* 4.1 20.4 - - + -
1323A ASN 3.2 11.7 - - - +
1324A VAL* 3.1 6.0 + - - +
1326A LEU* 1.3 74.3 - - - +
1328A CYS* 1.3 58.1 + - - +
1330A ILE* 3.4 3.5 + - - +
1331A PHE* 2.9 31.9 + - - +
1451A LEU* 4.9 6.1 - - + -
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Residues in contact with CYS1328 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1324A VAL* 2.9 18.8 + - - +
1325A LEU* 3.4 15.3 - - + +
1327A VAL* 1.3 76.2 - - - +
1329A LEU* 1.3 59.6 + - + +
1331A PHE* 4.4 4.0 - - - -
1332A TRP* 2.8 48.2 + - + +
1448A THR* 3.8 29.2 - - - -
1451A LEU* 6.4 0.2 - - - -
1452A PHE* 3.4 34.5 - - + -
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Residues in contact with LEU1329 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1325A LEU* 2.8 36.7 + - + +
1326A LEU* 3.7 15.7 - - + +
1328A CYS* 1.3 80.3 - - + +
1330A ILE* 1.3 67.8 + - + +
1332A TRP* 4.6 3.1 - - + -
1333A LEU* 3.0 11.1 + - - +
1396A TYR* 2.6 50.5 + - + +
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Residues in contact with ILE1330 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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842A VAL* 4.4 23.6 - - + -
845A LEU* 4.9 10.1 - - + -
849A TRP* 4.3 19.5 - - + -
852A LEU* 5.4 9.4 - - + -
1326A LEU* 3.0 28.6 + - + +
1327A VAL* 3.9 5.4 - - + +
1329A LEU* 1.3 80.6 - - + +
1331A PHE* 1.3 64.6 + - - +
1333A LEU* 3.3 28.3 + - + +
1334A ILE* 3.6 13.5 + - + +
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Residues in contact with PHE1331 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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843A PHE* 3.9 30.1 - + + -
852A LEU* 6.0 1.1 - - + +
855A LEU* 3.4 35.9 - - + -
859A ILE* 4.6 6.5 - - + -
1327A VAL* 2.9 19.8 + - + +
1328A CYS* 3.8 4.7 - - - +
1330A ILE* 1.3 79.7 - - - +
1332A TRP* 1.3 64.4 + + + +
1333A LEU 3.3 0.5 + - - -
1334A ILE* 3.4 20.5 + - + +
1335A PHE* 3.8 25.9 + + - -
1443A PHE* 4.0 47.3 - + + -
1447A PHE* 5.4 0.4 - - + -
1448A THR* 4.1 15.9 - - + -
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Residues in contact with TRP1332 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1328A CYS* 2.8 34.6 + - + +
1329A LEU* 4.1 2.5 - - + +
1331A PHE* 1.3 79.8 - + + +
1333A LEU* 1.3 60.0 + - - +
1335A PHE* 3.2 9.9 + + - +
1336A SER* 2.9 28.7 + - - -
1396A TYR* 3.9 29.2 - + + -
1399A LEU* 3.7 16.7 - - + +
1400A LEU* 4.0 33.7 - - + -
1403A ALA* 3.6 30.5 - - + -
1440A PHE* 4.1 15.7 - + - -
1444A GLY* 3.4 28.7 + - - -
1445A SER* 5.6 0.4 - - - -
1448A THR* 4.0 14.7 + - + +
1452A PHE* 6.5 1.1 - + - -
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Residues in contact with LEU1333 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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758A THR* 4.5 15.0 - - + +
759A LEU* 5.5 9.9 - - + -
762A ALA* 5.1 6.5 - - + -
842A VAL* 6.6 0.2 - - + -
1329A LEU 3.0 18.4 + - - +
1330A ILE* 3.4 21.1 - - + +
1331A PHE 3.2 0.2 - - - -
1332A TRP* 1.3 74.5 - - - +
1334A ILE* 1.3 61.2 + - + +
1336A SER* 4.2 2.9 - - - -
1337A ILE* 2.8 53.2 + - + +
1392A VAL* 3.7 28.7 - - + -
1396A TYR* 3.6 16.4 + - + +
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Residues in contact with ILE1334 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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758A THR* 5.7 0.9 - - - +
839A LEU* 3.6 41.2 - - + +
840A LEU* 4.6 7.9 - - + -
842A VAL* 4.3 18.6 - - + -
843A PHE* 4.1 30.3 - - + -
1330A ILE* 3.6 15.9 + - + +
1331A PHE* 3.4 15.0 + - + +
1332A TRP 3.3 0.6 - - - -
1333A LEU* 1.3 77.3 - - + +
1335A PHE* 1.3 60.0 + - + +
1337A ILE* 3.4 8.3 + - + +
1338A MET* 2.9 48.0 + - + +
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Residues in contact with PHE1335 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1331A PHE* 3.8 39.3 + + - -
1332A TRP* 3.2 8.4 + + - +
1334A ILE* 1.3 81.8 - - + +
1336A SER* 1.3 58.1 + - - +
1338A MET* 3.3 20.7 + - + +
1339A GLY 2.8 14.6 + - - -
1399A LEU* 4.1 5.2 - - + -
1436A TYR* 2.5 41.6 + + - +
1439A VAL* 4.3 16.8 - - + -
1440A PHE* 3.5 46.4 - + + -
1443A PHE* 3.9 27.8 - + + -
1444A GLY* 4.4 2.7 - - - -
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Residues in contact with SER1336 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1332A TRP 2.9 17.3 + - - -
1333A LEU* 3.6 8.5 - - - -
1335A PHE* 1.3 74.9 - - - +
1337A ILE* 1.3 61.0 + - - +
1339A GLY* 3.4 1.3 + - - +
1340A VAL* 2.8 33.3 + - - +
1389A PHE* 4.4 5.9 - - - -
1392A VAL* 3.4 32.9 + - - +
1395A GLY* 4.0 6.6 - - - -
1396A TYR* 4.0 11.3 + - - -
1399A LEU* 3.6 16.7 - - - +
1436A TYR* 4.7 0.7 - - - -
----------------------------------------------------------
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Residues in contact with ILE1337 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758A THR* 3.8 31.6 - - - +
761A MET* 4.3 26.5 - - + +
762A ALA* 4.5 13.5 - - - -
764A GLU* 5.6 0.4 - - - +
839A LEU* 3.6 21.3 - - + -
1333A LEU* 2.8 49.3 + - + +
1334A ILE* 3.8 7.2 - - + +
1336A SER* 1.3 70.2 - - - +
1338A MET* 1.3 64.7 + - - +
1340A VAL* 3.3 9.0 + - + +
1341A ASN* 3.2 30.9 + - - +
1392A VAL* 4.8 4.7 - - + -
----------------------------------------------------------
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Residues in contact with MET1338 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833A VAL* 5.7 3.1 - - + -
836A SER* 3.7 21.8 + - - +
837A PHE* 4.4 22.9 - - + -
839A LEU* 4.1 14.3 - - + +
840A LEU* 5.3 1.3 - - + -
1334A ILE* 2.9 45.6 + - + +
1335A PHE* 3.5 23.3 - - + +
1337A ILE* 1.3 78.1 - - - +
1339A GLY* 1.3 61.9 + - - +
1341A ASN* 3.5 5.2 + - - +
1342A LEU* 3.4 31.1 + - + +
1436A TYR* 4.3 16.2 - - + -
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Residues in contact with GLY1339 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1335A PHE 2.8 11.4 + - - -
1336A SER 3.7 2.0 - - - -
1338A MET* 1.3 75.8 - - - +
1340A VAL* 1.3 63.5 + - - +
1342A LEU* 3.4 1.3 + - - -
1343A PHE* 3.0 36.1 + - - +
1389A PHE* 4.0 15.1 - - - +
1436A TYR* 3.4 23.5 + - - -
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Residues in contact with VAL1340 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
764A GLU* 4.0 27.6 - - + +
1336A SER* 2.8 26.8 + - - +
1337A ILE* 3.7 6.5 - - + +
1338A MET 3.3 0.4 - - - -
1339A GLY* 1.3 77.0 - - - +
1341A ASN* 1.3 58.3 + - - +
1344A ALA* 2.7 41.8 + - + +
1389A PHE* 3.7 28.5 - - + +
1390A ASP 4.3 7.2 - - - +
1391A ASN* 4.0 21.3 - - - +
1392A VAL* 4.1 14.1 - - + +
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Residues in contact with ASN1341 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
761A MET* 5.8 2.9 - - - +
764A GLU* 2.3 33.9 + - - +
836A SER* 4.0 27.0 - - - +
1337A ILE* 3.2 26.5 + - - +
1338A MET 3.9 7.4 - - - +
1339A GLY 3.3 0.8 - - - -
1340A VAL* 1.3 79.7 - - - +
1342A LEU* 1.3 65.4 + - + +
1344A ALA* 4.4 2.1 + - - +
1346A LYS* 4.8 5.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU1342 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833A VAL* 3.7 37.9 - - + -
836A SER* 5.6 1.3 - - - +
1338A MET* 3.4 19.3 + - + +
1339A GLY 3.4 6.9 + - - +
1341A ASN* 1.3 84.2 - - + +
1343A PHE* 1.3 81.9 + - + +
1346A LYS* 3.0 28.4 + - - +
1418A SER* 5.5 0.2 + - - -
1433A MET* 3.9 33.3 - - + +
1436A TYR* 4.5 20.0 - - + -
----------------------------------------------------------
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Residues in contact with PHE1343 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1339A GLY* 3.0 22.2 + - - +
1342A LEU* 1.3 98.8 - - + +
1344A ALA* 1.3 66.4 + - - +
1345A GLY 3.2 1.0 + - - -
1346A LYS* 3.2 21.1 + - + +
1347A PHE* 3.4 28.7 - + + -
1389A PHE* 3.6 25.5 + + + +
1390A ASP* 5.0 0.3 - - - +
1415A ALA* 3.7 33.4 - - + -
1418A SER* 4.4 5.6 - - - -
1433A MET* 4.1 27.6 - - + -
1436A TYR* 3.9 37.5 - + - -
1437A PHE* 4.3 9.4 - + - -
----------------------------------------------------------
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Residues in contact with ALA1344 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
764A GLU* 6.0 0.4 - - + -
765A HIS 4.9 4.5 - - - +
766A HIS* 4.5 8.3 - - - +
1340A VAL* 2.7 33.2 + - + +
1341A ASN 4.4 1.8 + - - +
1342A LEU 3.8 1.2 - - - -
1343A PHE* 1.3 75.1 - - - +
1345A GLY* 1.3 60.6 + - - +
1346A LYS* 3.2 10.0 + - - +
1389A PHE 3.4 21.9 + - - +
1390A ASP 4.2 7.9 - - - +
1421A VAL* 4.3 10.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il