Contacts of the helix formed by residues 424 - 483 (chain D) in PDB entry 6KW5
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 424 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420D LYS* 3.0 48.2 + - - +
421D TYR* 5.7 0.2 - - - -
423D GLU* 1.3 79.0 - - + +
425D SER* 1.3 65.0 + - - +
426D GLN 3.3 0.7 + - - -
427D ALA* 3.6 14.3 + - - +
428D ILE* 3.8 13.4 + - + +
62E LEU* 5.1 11.7 - - + +
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Residues in contact with SER 425 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421D TYR 3.4 23.8 + - - -
422D ILE 4.2 0.8 - - - -
423D GLU 3.3 1.4 - - - -
424D GLU* 1.3 77.3 - - - +
426D GLN* 1.3 59.9 + - - +
428D ILE* 3.1 6.1 + - - +
429D ILE* 2.9 35.0 + - - +
62E LEU* 3.6 28.6 - - - +
65E MET* 6.0 0.3 - - - +
430H GLN* 3.3 27.2 + - - +
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Residues in contact with GLN 426 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422D ILE* 3.7 20.0 + - - +
423D GLU* 4.4 14.5 + - - +
424D GLU 3.3 1.6 - - - -
425D SER* 1.3 78.1 - - - +
427D ALA* 1.3 58.2 + - - +
429D ILE* 3.3 7.0 + - - +
430D GLN* 2.9 44.9 + - - +
426H GLN* 4.0 13.3 + - - -
430H GLN* 3.8 10.5 - - - +
26I LYS 4.3 6.5 + - - -
27I VAL 3.9 17.3 + - - -
28I SER* 5.3 5.6 - - - -
29I ASN* 4.0 19.2 - - - +
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Residues in contact with ALA 427 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423D GLU 4.9 1.7 + - - +
424D GLU* 3.6 11.2 + - - +
425D SER 3.3 0.2 - - - -
426D GLN* 1.3 75.3 - - - +
428D ILE* 1.3 61.4 + - + +
430D GLN* 3.8 5.6 - - - +
431D GLU* 2.9 32.2 + - - +
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Residues in contact with ILE 428 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424D GLU 3.8 15.0 - - - +
425D SER* 3.1 12.0 + - - +
427D ALA* 1.3 77.2 - - + +
429D ILE* 1.3 59.0 + - + +
431D GLU* 3.4 5.0 + - + +
432D LEU* 2.9 29.9 + - + +
62E LEU* 4.4 12.3 - - + -
65E MET* 4.0 27.4 - - + +
66E LYS* 4.7 14.4 - - + +
69E LEU* 3.7 29.5 - - + +
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Residues in contact with ILE 429 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425D SER* 2.9 30.7 + - - +
426D GLN* 3.7 9.6 - - - +
427D ALA 3.3 0.2 - - - -
428D ILE* 1.3 77.2 - - + +
430D GLN* 1.3 58.6 + - + +
432D LEU* 3.2 2.9 + - - +
433D VAL* 3.0 35.2 + - - +
65E MET* 3.7 33.9 - - + -
430H GLN* 4.8 17.7 - - + +
433H VAL* 3.7 32.8 - - + -
29I ASN* 4.7 12.6 - - - +
32I ASP* 3.3 22.2 - - + +
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Residues in contact with GLN 430 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426D GLN* 2.9 27.3 + - - +
427D ALA* 3.8 4.4 - - - +
429D ILE* 1.3 78.6 - - + +
431D GLU* 1.3 60.9 + - - +
433D VAL* 4.4 1.7 - - - +
434D LYS* 3.6 27.0 + - - +
28I SER* 3.6 26.9 + - - -
29I ASN* 4.6 4.8 + - - +
32I ASP* 3.8 16.8 - - + +
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Residues in contact with GLU 431 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427D ALA 2.9 19.0 + - - +
428D ILE* 3.7 6.5 - - + +
430D GLN* 1.3 77.8 - - - +
432D LEU* 1.3 59.4 + - - +
434D LYS* 3.3 8.5 + - - +
435D LEU* 2.9 39.9 + - + +
69E LEU* 3.8 23.1 - - + -
73E LYS* 4.6 11.6 + - + +
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Residues in contact with LEU 432 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428D ILE 2.9 19.4 + - - +
429D ILE* 4.0 3.1 - - - +
431D GLU* 1.3 75.5 - - - +
433D VAL* 1.3 62.0 + - + +
435D LEU* 3.3 16.3 + - + +
436D THR* 2.9 37.9 + - - +
65E MET* 3.7 29.6 - - + +
68E MET* 3.7 41.3 - - + +
69E LEU* 3.7 29.6 - - + -
72E LEU* 4.8 3.8 - - + -
437H MET* 4.4 12.8 - - + -
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Residues in contact with VAL 433 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429D ILE 3.0 15.9 + - - +
430D GLN 5.1 0.7 - - - +
432D LEU* 1.3 77.3 - - + +
434D LYS* 1.3 58.8 + - - +
436D THR* 3.2 6.3 + - - -
437D MET* 2.9 35.2 + - + +
433H VAL* 4.4 9.2 - - + -
437H MET* 5.5 3.4 - - - -
32I ASP* 3.2 38.4 - - - +
35I LYS* 4.7 10.5 - - + -
36I LEU* 3.7 42.8 - - + -
39I MET* 4.5 1.7 - - + +
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Residues in contact with LYS 434 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430D GLN 3.6 21.4 + - - +
431D GLU* 3.3 9.3 + - - +
432D LEU 3.3 0.2 - - - -
433D VAL* 1.3 78.9 - - - +
435D LEU* 1.3 57.3 + - - +
437D MET* 3.3 12.3 - - + +
438D GLU* 3.0 43.1 + - + +
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Residues in contact with LEU 435 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431D GLU* 2.9 27.7 + - - +
432D LEU* 3.6 11.9 - - + +
433D VAL 3.3 0.2 - - - -
434D LYS* 1.3 78.1 - - - +
436D THR* 1.3 59.0 + - - +
438D GLU* 3.2 19.6 + - - +
439D LYS* 3.0 28.9 + - + +
69E LEU* 4.8 9.0 - - + -
72E LEU* 3.7 43.7 - - + +
73E LYS* 3.7 36.1 - - + +
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Residues in contact with THR 436 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
432D LEU* 2.9 21.0 + - - +
433D VAL* 3.2 6.7 + - - -
435D LEU* 1.3 75.3 - - - +
437D MET* 1.3 59.7 + - - +
439D LYS* 4.5 7.6 - - - +
440D LEU* 2.9 34.7 + - - +
72E LEU* 5.9 1.6 - - - +
437H MET* 3.3 31.9 - - + +
440H LEU* 5.0 1.3 - - + -
444H PHE* 4.1 22.9 - - + -
36I LEU* 5.4 0.4 - - - -
39I MET* 3.7 26.2 - - - -
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Residues in contact with MET 437 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
433D VAL* 2.9 25.2 + - + +
434D LYS* 3.3 16.4 - - + +
436D THR* 1.3 76.8 - - - +
438D GLU* 1.3 57.0 + - + +
440D LEU* 4.2 4.9 - - - +
441D GLU* 2.9 41.1 + - + +
35I LYS* 5.4 18.6 - - + +
39I MET* 3.6 23.5 - - + +
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Residues in contact with GLU 438 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434D LYS* 3.0 29.5 + - + +
435D LEU* 3.2 20.1 + - - +
437D MET* 1.3 77.4 - - - +
439D LYS* 1.3 58.1 + - - +
441D GLU* 3.9 5.8 - - - +
442D SER* 3.0 29.9 + - - -
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Residues in contact with LYS 439 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435D LEU* 3.0 19.0 + - + +
436D THR* 4.1 7.6 - - - +
438D GLU* 1.3 76.4 - - - +
440D LEU* 1.3 58.6 + - - +
442D SER* 3.4 7.0 + - - -
443D LYS* 2.9 42.6 + - - +
72E LEU* 3.4 33.0 - - + +
444H PHE* 4.3 37.4 - - + +
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Residues in contact with LEU 440 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
436D THR 2.9 19.3 + - - +
437D MET* 4.2 5.4 - - - +
439D LYS* 1.3 74.7 - - - +
441D GLU* 1.3 62.4 + - + +
443D LYS* 3.9 2.8 - - - +
444D PHE* 2.9 66.9 + - + -
440H LEU* 5.8 0.2 - - + -
444H PHE* 3.6 34.7 - - + -
39I MET* 3.7 34.8 - - + +
42I ARG* 5.2 16.8 - - - +
43I LEU* 4.2 15.9 - - + -
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Residues in contact with GLU 441 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437D MET* 2.9 27.0 + - + +
438D GLU* 3.9 5.4 - - - +
440D LEU* 1.3 80.8 - - + +
442D SER* 1.3 56.6 + - - +
444D PHE* 3.9 4.1 - - - +
445D THR* 2.9 45.6 + - + +
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Residues in contact with SER 442 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438D GLU 3.0 18.5 + - - -
439D LYS* 3.6 7.6 - - - -
441D GLU* 1.3 76.8 - - - +
443D LYS* 1.3 56.6 + - - +
445D THR* 2.7 20.3 + - - -
446D LYS* 3.0 16.5 + - - +
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Residues in contact with LYS 443 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439D LYS* 2.9 31.0 + - - +
440D LEU* 3.4 5.1 + - - +
441D GLU 3.3 0.2 - - - -
442D SER* 1.3 77.1 - - - +
444D PHE* 1.3 59.9 + - + +
446D LYS* 3.3 15.5 + - - +
447D LEU* 3.0 29.1 + - + +
444H PHE* 4.3 20.2 - - + -
447H LEU* 3.6 26.7 - - + -
448H CYS* 3.2 20.8 - - - -
451H GLU* 2.7 35.3 + - + +
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Residues in contact with PHE 444 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440D LEU* 2.9 57.2 + - + +
441D GLU* 4.0 4.7 - - - +
443D LYS* 1.3 76.6 - - + +
445D THR* 1.3 61.2 + - + +
447D LEU* 4.4 3.8 - - + +
448D CYS* 2.9 44.7 + - - -
444H PHE* 6.2 0.2 - + - -
447H LEU* 4.5 6.3 - - + -
42I ARG* 4.6 27.4 - - + +
43I LEU* 3.6 35.4 - - + -
46I TYR* 3.5 49.4 - + + -
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Residues in contact with THR 445 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441D GLU* 2.9 28.9 + - + +
442D SER* 2.7 24.8 + - - -
444D PHE* 1.3 77.3 - - + +
446D LYS* 1.3 59.8 + - - +
448D CYS* 4.2 4.3 - - - +
449D ASP* 3.1 31.1 + - - +
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Residues in contact with LYS 446 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442D SER 3.0 13.6 + - - +
443D LYS* 3.5 17.8 - - - +
444D PHE 3.2 0.4 - - - -
445D THR* 1.3 78.4 - - - +
447D LEU* 1.3 63.4 + - + +
449D ASP* 3.3 5.3 + - - +
450D LEU* 3.0 27.3 + - + +
451H GLU* 3.2 47.2 + - - +
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Residues in contact with LEU 447 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443D LYS 3.0 17.1 + - - +
444D PHE* 3.3 6.3 + - + +
446D LYS* 1.3 82.5 - - + +
448D CYS* 1.3 58.7 + - - +
450D LEU* 3.1 18.9 + - + +
451D GLU* 3.0 33.6 + - - +
447H LEU* 3.7 34.8 - - + +
450H LEU* 4.9 6.1 - - + +
451H GLU* 4.1 35.9 - - + +
454H LEU* 5.3 5.2 - - + -
46I TYR* 3.3 36.1 - - + +
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Residues in contact with CYS 448 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444D PHE* 2.9 40.1 + - - +
445D THR* 4.8 4.7 - - - +
447D LEU* 1.3 78.0 - - - +
449D ASP* 1.3 62.0 + - - +
451D GLU* 4.0 8.9 + - - +
452D THR* 3.5 22.5 + - - +
46I TYR* 5.1 9.4 - - - -
330M LYS* 2.9 42.4 - - - +
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Residues in contact with ASP 449 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445D THR* 3.1 21.6 + - - +
446D LYS* 3.3 4.8 + - - +
447D LEU 3.2 0.4 - - - -
448D CYS* 1.3 79.8 - - - +
450D LEU* 1.3 62.0 + - - +
451D GLU 3.4 0.4 - - - -
452D THR* 2.9 24.6 + - - +
453D GLN* 3.9 13.2 + - - +
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Residues in contact with LEU 450 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446D LYS* 3.0 16.6 + - + +
447D LEU* 3.1 22.6 + - + +
449D ASP* 1.3 77.5 - - - +
451D GLU* 1.3 58.0 + - + +
453D GLN* 3.3 6.1 + - - +
454D LEU* 3.0 52.4 + - + +
450H LEU 5.5 0.9 - - - +
451H GLU 5.6 3.1 - - - +
454H LEU* 4.0 18.6 - - + -
455H GLU* 4.2 23.6 - - + +
458H LYS* 4.0 28.9 - - + +
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Residues in contact with GLU 451 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447D LEU* 3.0 18.2 + - + +
448D CYS* 4.0 9.1 + - - +
449D ASP 3.4 0.4 - - - -
450D LEU* 1.3 75.6 - - + +
452D THR* 1.3 60.2 + - + +
454D LEU* 3.3 22.4 + - + +
455D GLU* 2.9 30.3 + - - +
454H LEU* 4.2 6.8 - - + +
46I TYR* 3.0 25.4 + - - +
49I ARG* 3.2 30.9 + - - -
50I ARG* 3.8 21.7 + - - +
334M LEU* 4.6 11.0 - - + +
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Residues in contact with THR 452 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448D CYS 3.5 17.5 - - - +
449D ASP* 2.9 19.1 + - - +
451D GLU* 1.3 78.1 - - + +
453D GLN* 1.3 63.3 + - - +
455D GLU* 3.1 9.6 + - - +
456D MET* 3.0 38.3 + - - +
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Residues in contact with GLN 453 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449D ASP 3.9 12.3 + - - +
450D LEU* 3.3 7.9 + - - +
452D THR* 1.3 81.5 + - - +
454D LEU* 1.3 64.6 + - - +
456D MET* 4.2 14.2 - - - +
457D GLU* 3.6 27.4 + - - +
458H LYS* 2.4 46.7 + - - +
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Residues in contact with LEU 454 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450D LEU* 3.0 29.2 + - + +
451D GLU* 3.3 25.4 - - + +
452D THR 3.2 0.4 - - - -
453D GLN* 1.3 77.9 - - - +
455D GLU* 1.3 58.8 + - - +
457D GLU* 3.2 8.5 + - - +
458D LYS* 3.0 37.4 + - + +
454H LEU* 3.3 55.4 - - + +
457H GLU* 4.9 3.1 - - + -
458H LYS* 3.8 24.2 - - + +
461H TYR* 5.5 0.2 - - - -
50I ARG* 4.9 4.7 - - - +
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Residues in contact with GLU 455 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451D GLU 2.9 17.9 + - - +
452D THR* 3.1 8.6 + - - +
454D LEU* 1.3 74.0 - - - +
456D MET* 1.3 61.9 + - + +
458D LYS* 3.6 15.4 - - + +
459D LEU* 2.9 32.4 + - + +
334M LEU* 5.6 4.9 - - - +
337M GLU* 3.6 21.4 - - - +
552M ARG* 3.7 20.9 + - - +
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Residues in contact with MET 456 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452D THR* 3.0 26.4 + - - +
453D GLN* 4.5 13.5 - - - +
454D LEU 3.3 0.2 - - - -
455D GLU* 1.3 77.2 - - + +
457D GLU* 1.3 58.4 + - + +
459D LEU* 3.3 6.9 + - - +
460D LYS* 2.9 56.5 + - + +
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Residues in contact with GLU 457 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453D GLN 3.6 14.4 + - - +
454D LEU* 3.2 7.2 + - - +
456D MET* 1.3 76.7 - - + +
458D LYS* 1.3 60.1 + - - +
460D LYS* 3.7 6.2 - - + +
461D TYR* 3.0 30.8 + - - +
457H GLU 4.4 1.7 - - - +
458H LYS* 2.9 52.7 - - - +
461H TYR* 4.7 11.6 - - + +
462H VAL* 3.6 23.3 + - + +
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Residues in contact with LYS 458 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454D LEU* 3.0 26.3 + - + +
455D GLU* 3.3 20.3 + - + +
457D GLU* 1.3 76.2 - - - +
459D LEU* 1.3 61.0 + - - +
461D TYR* 3.9 1.5 + - - +
462D VAL* 3.3 27.0 + - - +
457H GLU* 5.9 2.2 - - - +
461H TYR* 3.6 35.9 - - + -
50I ARG* 5.0 9.3 - - - +
53I ASP* 4.8 12.7 + - - -
56I ILE 4.8 13.7 + - - -
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Residues in contact with LEU 459 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455D GLU* 2.9 20.0 + - + +
456D MET* 3.6 6.7 - - - +
457D GLU 3.2 0.2 - - - -
458D LYS* 1.3 79.0 - - - +
460D LYS* 1.3 64.9 + - + +
461D TYR 3.2 0.2 - - - -
462D VAL* 3.3 4.1 + - - +
463D LYS* 3.0 56.8 + - + +
552M ARG* 5.0 20.0 - - + -
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Residues in contact with LYS 460 (chain D).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456D MET* 2.9 41.9 + - + +
457D GLU* 3.4 5.6 + - - +
459D LEU* 1.3 79.9 - - + +
461D TYR* 1.3 62.0 + - - +
463D LYS* 3.7 23.8 - - + +
464D GLU* 3.6 29.5 - - - +
465H SER* 5.1 4.1 - - - -
----------------------------------------------------------
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Residues in contact with TYR 461 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457D GLU 3.0 16.1 + - - +
458D LYS* 4.2 5.2 - - - +
460D LYS* 1.3 78.2 - - - +
462D VAL* 1.3 71.6 + - + +
464D GLU* 3.4 4.4 + - - +
465D SER* 3.0 41.5 + - - -
461H TYR* 4.2 39.5 - + + -
464H GLU* 3.7 31.0 + - + +
465H SER* 4.3 14.6 - - - -
468H MET* 4.4 22.0 - - + +
----------------------------------------------------------
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Residues in contact with VAL 462 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458D LYS 3.3 18.4 + - - +
459D LEU* 3.3 5.2 + - - +
461D TYR* 1.3 88.7 - - + +
463D LYS* 1.3 57.9 + - - +
465D SER* 3.1 7.9 + - - +
466D GLU* 2.9 55.1 + - + +
555M PRO* 3.9 23.3 - - + -
----------------------------------------------------------
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Residues in contact with LYS 463 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459D LEU* 3.0 41.2 + - + +
460D LYS* 3.7 24.7 - - + +
462D VAL* 1.3 77.0 - - - +
464D GLU* 1.3 64.8 + - + +
466D GLU* 4.5 6.2 - - - +
467D LYS* 3.5 40.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 464 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460D LYS* 3.6 21.0 - - - +
461D TYR* 3.4 7.2 + - - +
462D VAL 3.1 0.2 - - - -
463D LYS* 1.3 86.3 - - + +
465D SER* 1.3 59.2 + - - +
466D GLU 3.3 1.6 - - - -
467D LYS* 3.4 3.0 + - + +
468D MET* 3.0 27.3 + - + +
465H SER* 4.5 11.3 - - - +
468H MET* 5.8 5.0 - - + +
469H LEU* 3.3 39.7 - - + +
472H ARG* 3.1 25.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 465 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461D TYR* 3.0 36.1 + - - -
462D VAL* 3.1 18.9 + - - +
464D GLU* 1.3 76.1 - - - +
466D GLU* 1.3 62.2 + - - +
468D MET* 3.3 9.8 + - - +
469D LEU* 2.9 27.9 + - - +
468H MET* 5.3 11.0 - - - -
----------------------------------------------------------
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Residues in contact with GLU 466 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462D VAL* 2.9 38.9 + - + +
463D LYS* 5.2 3.8 - - - +
465D SER* 1.3 76.4 + - - +
467D LYS* 1.3 61.3 + - + +
469D LEU* 3.3 7.7 + - + +
470D ASN* 2.8 40.6 + - - +
254I TYR* 4.1 19.3 + - - +
258I LYS* 4.7 15.3 + - - +
554M ARG* 4.5 12.8 + - - -
555M PRO* 3.9 20.6 - - - +
558M LEU* 4.5 5.4 - - - +
----------------------------------------------------------
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Residues in contact with LYS 467 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463D LYS* 3.5 31.9 + - - +
464D GLU* 3.4 4.8 + - + +
465D SER 3.3 0.2 - - - -
466D GLU* 1.3 74.6 - - + +
468D MET* 1.3 61.0 + - - +
470D ASN* 3.4 11.5 + - - +
471D ASP* 2.9 38.8 + - - +
472H ARG* 3.6 22.9 - - - +
----------------------------------------------------------
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Residues in contact with MET 468 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464D GLU* 3.0 20.9 + - + +
465D SER* 3.5 11.7 - - - +
466D GLU 3.3 0.4 - - - -
467D LYS* 1.3 76.2 - - - +
469D LEU* 1.3 57.8 + - - +
471D ASP* 3.3 10.2 + - + +
472D ARG* 2.9 38.6 + - + +
468H MET* 4.5 30.5 - - + +
471H ASP* 4.6 12.1 - - + +
472H ARG* 3.1 59.5 - - + +
475H LEU* 4.9 15.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 469 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465D SER 2.9 16.3 + - - +
466D GLU* 3.8 7.9 - - + +
467D LYS 3.3 0.2 - - - -
468D MET* 1.3 73.4 - - - +
470D ASN* 1.3 61.5 + - - +
472D ARG* 3.2 10.4 + - + +
473D LEU* 3.0 52.6 + - + +
254I TYR* 4.0 27.4 - - + +
255I SER* 5.2 13.5 - - - -
258I LYS* 3.7 29.4 - - + -
----------------------------------------------------------
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Residues in contact with ASN 470 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466D GLU* 2.8 31.7 + - - +
467D LYS* 3.7 11.3 - - - +
468D MET 3.3 0.2 - - - -
469D LEU* 1.3 75.5 - - - +
471D ASP* 1.3 61.4 + - - +
473D LEU* 3.3 6.6 + - - +
474D SER* 2.9 28.9 + - - -
258I LYS* 3.6 18.4 + - - +
262I ILE* 3.3 27.6 - - + +
----------------------------------------------------------
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Residues in contact with ASP 471 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467D LYS* 2.9 25.7 + - - +
468D MET* 3.6 12.9 - - + +
469D LEU 3.3 0.2 - - - -
470D ASN* 1.3 78.4 - - - +
472D ARG* 1.3 57.4 + - + +
474D SER* 2.9 11.0 + - - +
475D LEU* 2.9 39.8 + - + +
472H ARG* 4.6 13.3 + - - +
475H LEU* 5.7 7.4 - - + -
----------------------------------------------------------
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Residues in contact with ARG 472 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468D MET* 2.9 27.0 + - + +
469D LEU* 3.2 13.2 + - + +
471D ASP* 1.3 76.0 - - - +
473D LEU* 1.3 63.4 + - + +
475D LEU* 3.9 8.8 + - - +
476D SER* 3.5 17.8 + - - -
471H ASP* 5.9 0.4 + - - -
475H LEU* 4.5 20.6 - - + -
242I ILE 4.4 9.0 + - - +
243I GLY* 3.4 14.2 + - - -
244I MET* 3.4 47.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 473 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469D LEU* 3.0 38.5 + - + +
470D ASN* 3.8 4.7 - - - +
471D ASP 3.2 0.2 - - - -
472D ARG* 1.3 78.2 - - + +
474D SER* 1.3 59.1 + - - +
475D LEU 3.2 0.2 - - - -
476D SER* 2.5 22.9 + - - +
477D LYS* 3.0 18.5 + - + +
241I LEU 4.0 12.3 - - - +
242I ILE* 3.7 23.6 - - - +
255I SER* 4.6 9.0 - - - +
258I LYS 4.7 0.4 - - - -
259I TYR* 4.3 36.5 - - + +
262I ILE* 3.8 29.8 - - + -
----------------------------------------------------------
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Residues in contact with SER 474 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470D ASN 2.9 13.3 + - - -
471D ASP* 2.9 28.1 + - - +
473D LEU* 1.3 76.1 - - - +
475D LEU* 1.3 60.4 + - - +
477D LYS* 3.3 12.2 + - - +
478D GLN* 2.9 39.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 475 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471D ASP* 2.9 24.5 + - + +
472D ARG* 4.1 11.2 - - - +
474D SER* 1.3 78.5 + - - +
476D SER* 1.3 60.5 + - - +
478D GLN* 3.2 22.0 + - + +
479D ILE* 2.9 38.4 + - + +
475H LEU* 3.8 41.5 - - + -
478H GLN* 6.2 1.8 - - - +
479H ILE* 5.4 6.5 - - + -
482H LEU* 5.0 14.6 - - + -
----------------------------------------------------------
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Residues in contact with SER 476 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472D ARG 3.5 9.5 + - - -
473D LEU* 2.5 26.9 + - - +
475D LEU* 1.3 77.3 - - - +
477D LYS* 1.3 60.2 + - - +
479D ILE* 3.2 13.9 + - - +
480D LEU* 3.0 29.5 + - - +
240I THR 4.0 20.2 - - - -
241I LEU 4.4 8.9 + - - -
242I ILE 5.1 3.8 - - - -
243I GLY* 5.4 4.3 - - - -
259I TYR* 5.4 3.3 - - - -
318I LEU* 5.7 4.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS 477 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473D LEU* 3.0 14.6 + - + +
474D SER* 3.3 13.7 + - - +
476D SER* 1.3 84.5 + - - +
478D GLN* 1.3 58.7 + - + +
480D LEU* 3.3 36.6 - - + +
481D ASP* 4.0 7.4 + - - +
259I TYR* 4.6 24.0 - - + +
262I ILE* 6.0 4.3 - - + -
263I ASN* 4.0 20.6 - - - +
318I LEU* 5.8 0.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN 478 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474D SER* 2.9 24.9 + - - +
475D LEU* 3.2 22.2 + - + +
476D SER 3.2 0.2 - - - -
477D LYS* 1.3 77.7 - - + +
479D ILE* 1.3 59.3 + - + +
480D LEU 3.1 1.8 - - - -
481D ASP* 3.1 33.0 + - - +
482D LEU* 3.6 10.0 + - - +
482H LEU* 5.4 5.4 - - - +
----------------------------------------------------------
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Residues in contact with ILE 479 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475D LEU* 2.9 27.0 + - + +
476D SER* 3.2 10.9 + - - +
478D GLN* 1.3 74.3 - - + +
480D LEU* 1.3 65.2 + - - +
482D LEU* 3.2 24.6 + - + +
483D ASN* 3.2 27.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 480 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476D SER 3.0 14.9 + - - +
477D LYS* 3.3 35.9 - - + +
479D ILE* 1.3 76.5 - - - +
481D ASP* 1.3 62.5 + - - +
483D ASN* 3.7 4.4 + - - +
484D LYS* 3.3 40.0 + - - +
259I TYR* 5.5 1.1 - - - +
317I SER* 5.8 2.9 - - - +
318I LEU* 3.7 46.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 481 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477D LYS 4.3 6.1 - - - +
478D GLN* 3.1 24.6 + - - +
480D LEU* 1.3 79.1 - - - +
482D LEU* 1.3 66.1 + - + +
483D ASN 3.2 2.1 + - - -
484D LYS* 3.3 27.5 + - - +
485D SER* 3.6 13.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 482 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478D GLN 3.6 10.9 + - - +
479D ILE* 3.2 18.3 + - + +
481D ASP* 1.3 79.7 - - + +
483D ASN* 1.3 62.7 + - - +
484D LYS 3.6 0.4 - - - -
485D SER* 4.2 11.2 + - - +
486D LEU* 3.3 27.7 - - - +
482H LEU* 4.9 16.8 - - + -
486H LEU* 5.1 17.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN 483 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479D ILE* 3.2 32.8 + - - +
480D LEU* 3.7 4.2 + - - +
481D ASP 3.2 0.8 - - - -
482D LEU* 1.3 81.3 + - - +
484D LYS* 1.3 62.9 + - - +
485D SER 3.5 0.7 - - - -
486D LEU* 4.2 23.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il