Contacts of the helix formed by residues 446 - 517 (chain I) in PDB entry 6LTJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 446 (chain I).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444I ARG* 3.4 8.5 + - - -
445I GLN* 1.3 77.2 - - - +
447I LEU* 1.3 64.7 + - - +
448I ARG* 3.4 32.9 + - - -
449I GLU* 2.6 40.6 + - - +
450I ALA* 3.9 3.1 + - - +
2162L VAL* 3.3 14.8 - - - +
2166L MET* 5.2 0.3 - - - +
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Residues in contact with LEU 447 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446I SER* 1.3 72.9 - - - +
448I ARG* 1.3 72.1 + - - +
449I GLU 3.2 2.2 + - - -
450I ALA* 3.3 5.4 + - + +
451I ARG* 3.0 48.8 + - - +
2161L PRO* 4.3 20.4 - - + +
2162L VAL* 3.7 29.1 - - + +
2165L GLU* 3.2 31.2 - - + +
2225L PRO* 5.2 8.1 - - + +
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Residues in contact with ARG 448 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446I SER* 3.4 29.8 + - - -
447I LEU* 1.3 80.4 - - - +
449I GLU* 1.3 67.9 + - + +
451I ARG* 4.1 16.2 - - - +
452I ILE* 2.9 40.6 + - + +
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Residues in contact with GLU 449 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443I LYS* 4.4 10.9 + - - -
444I ARG* 2.9 30.0 - - - +
445I GLN* 4.2 2.6 - - - +
446I SER* 2.6 38.9 + - - +
448I ARG* 1.3 83.4 - - + +
450I ALA* 1.3 71.7 + - + +
452I ILE* 3.8 6.3 - - - +
453I THR* 2.4 36.7 + - - +
2120L GLU* 4.8 4.3 - - - +
175Q PRO* 5.8 5.7 - - - +
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Residues in contact with ALA 450 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446I SER 3.9 9.6 - - - +
447I LEU* 3.3 7.6 + - + +
449I GLU* 1.3 83.1 - - + +
451I ARG* 1.3 59.3 + - - +
453I THR* 3.1 5.9 + - - -
454I GLU* 2.6 47.7 + - - +
2120L GLU* 6.2 1.8 - - + +
2124L LYS* 5.6 5.4 - - - +
2162L VAL* 4.4 4.5 - - + -
2165L GLU* 5.9 2.9 - - + +
2166L MET* 4.3 24.2 - - + -
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Residues in contact with ARG 451 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447I LEU* 3.0 40.4 + - - +
448I ARG* 3.7 13.2 - - - +
450I ALA* 1.3 74.3 - - - +
452I ILE* 1.3 74.1 + - + +
454I GLU* 3.1 21.6 + - - +
455I LYS* 3.1 14.2 + - + +
2165L GLU* 2.4 42.2 + - - +
2225L PRO 4.7 1.8 + - - -
2226L THR* 3.6 17.8 + - - +
2227L SER* 3.2 42.8 - - - +
2229L ASP* 4.7 4.8 - - + +
2230L MET* 3.9 10.6 - - + +
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Residues in contact with ILE 452 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448I ARG* 2.9 33.8 + - + +
449I GLU* 3.8 7.0 - - - +
451I ARG* 1.3 83.4 - - + +
453I THR* 1.3 62.0 + - - +
455I LYS* 3.2 19.0 - - + +
456I LEU* 2.9 49.4 + - + +
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Residues in contact with THR 453 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449I GLU* 2.4 27.8 + - - +
450I ALA* 3.2 6.3 - - - +
452I ILE* 1.3 80.1 - - - +
454I GLU* 1.3 63.8 + - + +
456I LEU* 3.9 5.8 - - - +
457I GLU* 2.9 59.9 + - - +
2124L LYS* 3.6 24.7 + - + +
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Residues in contact with GLU 454 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450I ALA* 2.6 50.8 + - - +
451I ARG* 3.1 10.8 + - - +
453I THR* 1.3 77.0 - - - +
455I LYS* 1.3 65.0 + - - +
457I GLU* 3.9 1.1 - - - +
458I LYS* 3.0 19.9 + - - +
2123L SER* 4.5 11.8 + - - -
2124L LYS* 5.0 10.0 - - + +
2127L ILE* 3.6 27.4 - - + +
2165L GLU* 6.0 1.0 - - - +
2166L MET* 4.7 6.6 - - - +
2169L VAL* 3.9 31.1 - - + +
2230L MET* 4.2 5.2 - - - +
2233L ARG* 3.2 26.2 + - - +
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Residues in contact with LYS 455 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451I ARG* 3.1 9.4 + - + +
452I ILE* 3.2 28.3 - - + +
454I GLU* 1.3 78.6 - - - +
456I LEU* 1.3 88.1 + - - +
458I LYS* 3.3 2.9 + - - +
459I GLN* 3.0 48.2 + - + +
2229L ASP* 3.8 28.3 - - + +
2233L ARG* 3.5 8.9 - - - +
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Residues in contact with LEU 456 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452I ILE* 2.9 40.6 + - + +
453I THR* 4.0 4.9 - - - +
455I LYS* 1.3 95.9 - - - +
457I GLU* 1.3 59.5 + - + +
459I GLN* 3.2 21.3 + - - +
460I GLN* 2.9 43.6 + - + +
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Residues in contact with GLU 457 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453I THR* 2.9 45.0 + - - +
454I GLU 4.0 1.8 - - - +
456I LEU* 1.3 77.2 - - + +
458I LYS* 1.3 58.3 + - - +
460I GLN* 3.3 14.3 + - - +
461I LYS* 2.9 27.5 + - - +
1998L ASP* 5.5 1.7 - - - +
2069L GLY* 3.3 31.2 - - - +
2070L GLN* 4.2 16.3 - - - +
2124L LYS* 4.2 5.7 - - - +
2127L ILE* 3.2 32.5 - - + +
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Residues in contact with LYS 458 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454I GLU 3.0 17.1 + - - +
455I LYS 3.8 3.8 - - - +
457I GLU* 1.3 73.4 - - - +
459I GLN* 1.3 66.6 + - - +
461I LYS* 3.3 8.8 + - + +
462I ILE* 3.0 35.0 + - + +
2127L ILE* 4.0 23.5 + - + +
2173L ASN* 3.8 17.8 + - - +
2176L GLN* 5.6 3.6 + - - +
2229L ASP* 5.6 2.0 - - - +
2233L ARG* 3.2 33.9 - - - +
2236L ARG* 5.4 10.1 - - - +
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Residues in contact with GLN 459 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455I LYS* 3.0 33.4 + - + +
456I LEU* 3.3 29.4 - - - +
458I LYS* 1.3 77.2 - - - +
460I GLN* 1.3 62.9 + - + +
462I ILE* 3.1 18.2 - - + +
463I GLU* 3.0 36.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 460 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456I LEU* 2.9 33.5 + - + +
457I GLU* 3.3 14.6 + - - +
459I GLN* 1.3 76.1 - - + +
461I LYS* 1.3 58.7 + - - +
463I GLU* 3.3 16.0 + - - +
464I GLN* 2.9 27.9 + - - +
2070L GLN* 3.4 27.6 + - - +
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Residues in contact with LYS 461 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457I GLU 2.9 16.9 + - - +
458I LYS* 3.7 9.9 - - + +
459I GLN 3.2 0.2 - - - -
460I GLN* 1.3 77.9 - - - +
462I ILE* 1.3 60.8 + - + +
464I GLN* 3.2 8.5 + - + +
465I GLU* 2.9 65.4 + - + +
2127L ILE* 3.5 22.0 - - + +
2128L GLN* 3.5 18.4 - - + +
2129L ASP* 3.2 43.3 + - - +
2130L ASN* 5.2 4.3 - - - -
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Residues in contact with ILE 462 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458I LYS* 3.0 27.4 + - + +
459I GLN* 3.1 28.0 - - + +
461I LYS* 1.3 77.7 - - + +
463I GLU* 1.3 61.5 + - + +
465I GLU* 3.3 13.6 + - - +
466I ARG* 2.9 29.8 + - - +
469I ARG* 4.4 2.9 + - - +
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Residues in contact with GLU 463 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459I GLN* 3.0 27.8 + - - +
460I GLN* 3.5 17.5 - - - +
462I ILE* 1.3 81.4 - - + +
464I GLN* 1.3 62.1 + - - +
466I ARG* 3.0 32.1 + - + +
467I LYS* 3.0 24.7 + - - +
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Residues in contact with GLN 464 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460I GLN 2.9 15.0 + - - +
461I LYS* 3.5 11.7 - - + +
463I GLU* 1.3 75.9 - - - +
465I GLU* 1.3 58.5 + - + +
467I LYS* 3.2 25.4 + - - +
468I ARG* 3.0 25.5 + - - +
471I LYS* 3.6 24.2 + - - +
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Residues in contact with GLU 465 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461I LYS* 2.9 50.9 + - + +
462I ILE* 3.8 13.4 - - - +
463I GLU 3.2 0.2 - - - -
464I GLN* 1.3 76.9 - - + +
466I ARG* 1.3 60.0 + - - +
468I ARG* 3.2 15.4 + - + +
469I ARG* 2.9 42.6 + - - +
2129L ASP* 4.0 7.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 466 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462I ILE 2.9 17.7 + - - +
463I GLU* 3.0 37.2 + - + +
465I GLU* 1.3 72.4 - - - +
467I LYS* 1.3 94.1 + - - +
469I ARG* 3.2 24.6 + - - +
470I GLN* 2.9 55.1 + - + +
----------------------------------------------------------
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Residues in contact with LYS 467 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463I GLU* 3.0 14.7 + - - +
464I GLN* 3.3 35.9 - - - +
466I ARG* 1.3 110.2 - - - +
468I ARG* 1.3 56.1 + - - +
470I GLN* 3.2 8.1 + - + +
471I LYS* 2.9 50.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 468 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464I GLN 3.0 13.0 + - - +
465I GLU* 3.2 18.3 + - - +
467I LYS* 1.3 72.8 - - - +
469I ARG* 1.3 67.5 + - - +
471I LYS* 3.2 20.2 + - + +
472I HIS* 2.9 62.9 + - + +
45M LYS* 5.6 4.9 - - - +
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Residues in contact with ARG 469 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462I ILE* 4.4 3.4 + - - +
465I GLU* 2.9 23.3 + - - +
466I ARG* 3.2 44.9 + - + +
468I ARG* 1.3 78.1 - - - +
470I GLN* 1.3 58.9 + - + +
472I HIS* 3.2 10.0 + - - +
473I GLN* 2.9 28.5 + - - +
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Residues in contact with GLN 470 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466I ARG* 2.9 39.6 + - + +
467I LYS* 3.2 10.2 + - + +
469I ARG* 1.3 74.3 - - + +
471I LYS* 1.3 61.4 + - - +
473I GLN* 3.3 12.8 + - - +
474I GLU* 2.9 36.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 471 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464I GLN* 3.6 25.7 + - - +
467I LYS* 2.9 35.3 + - + +
468I ARG* 3.2 31.7 + - + +
470I GLN* 1.3 75.9 - - + +
472I HIS* 1.3 57.3 + - - +
474I GLU* 3.1 6.5 + - - +
475I TYR* 2.8 59.2 + - + +
----------------------------------------------------------
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Residues in contact with HIS 472 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468I ARG* 2.9 57.8 + - + +
469I ARG* 3.2 11.3 + - - +
471I LYS* 1.3 76.3 - - - +
473I GLN* 1.3 61.9 + - - +
475I TYR* 3.1 32.4 + + - +
476I LEU* 3.1 20.6 + - - +
408J GLN* 4.6 19.7 + - - -
409J MET* 4.2 15.9 - - + +
45M LYS* 5.8 0.4 - - - -
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Residues in contact with GLN 473 (chain I).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469I ARG 2.9 16.7 + - - +
470I GLN* 3.7 13.5 - - - +
472I HIS* 1.3 77.1 - - - +
474I GLU* 1.3 52.7 + - + +
476I LEU* 3.3 15.3 - - + +
477I ASN* 2.6 31.6 + - - -
184J ASP* 2.8 44.7 + - + +
185J GLY 4.1 4.4 + - - -
186J TYR* 3.9 23.6 - - - +
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Residues in contact with GLU 474 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470I GLN* 2.9 21.2 + - + +
471I LYS* 3.7 7.2 - - - +
473I GLN* 1.3 73.0 - - + +
475I TYR* 1.3 63.4 - - + +
476I LEU 3.0 2.0 - - - -
477I ASN* 2.9 32.8 + - - +
478I SER* 3.1 12.8 + - - -
184J ASP* 6.5 1.6 - - + -
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Residues in contact with TYR 475 (chain I).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471I LYS* 2.8 48.6 + - + +
472I HIS* 3.1 39.7 - + - +
474I GLU* 1.3 74.9 - - + +
476I LEU* 1.3 67.9 + - - +
477I ASN 2.9 0.4 - - - -
478I SER* 2.5 24.6 + - - -
479I ILE* 2.9 12.5 + - - +
405J THR* 5.9 0.2 - - - -
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Residues in contact with LEU 476 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472I HIS 3.1 7.6 + - - +
473I GLN* 3.3 20.2 - - + +
475I TYR* 1.3 85.3 - - - +
477I ASN* 1.3 68.4 + - - +
479I ILE* 3.1 9.8 - - + +
480I LEU* 2.9 51.3 + - + +
160J PHE* 4.7 4.0 - - + -
184J ASP 4.5 9.9 - - - +
185J GLY* 4.6 11.9 - - - +
400J LEU* 5.6 4.9 - - + -
405J THR* 3.8 32.1 - - + -
409J MET* 5.7 2.7 - - + -
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Residues in contact with ASN 477 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473I GLN 2.6 24.9 + - - +
474I GLU* 2.9 28.2 + - - +
476I LEU* 1.3 87.0 - - - +
478I SER* 1.3 64.0 + - - +
480I LEU* 3.2 10.9 + - - +
481I GLN* 2.9 36.6 + - - +
484I LYS* 4.5 1.9 + - - -
160J PHE* 5.7 0.6 - - - -
165J SER* 4.1 21.7 + - - +
184J ASP* 4.2 25.6 + - - +
185J GLY 5.0 0.2 - - - +
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Residues in contact with SER 478 (chain I).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474I GLU 3.1 3.9 + - - -
475I TYR* 2.5 33.3 + - - -
477I ASN* 1.3 78.8 - - - +
479I ILE* 1.3 55.7 + - - -
481I GLN* 3.1 23.1 - - - +
482I HIS* 2.9 25.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 479 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475I TYR 2.9 12.3 + - - +
476I LEU* 3.1 23.6 - - + +
478I SER* 1.3 76.1 + - - +
480I LEU* 1.3 70.6 + - + +
482I HIS* 3.1 36.5 + - + +
483I ALA* 2.9 19.2 + - - +
403J LEU* 4.1 26.4 - - + +
404J GLY* 4.7 7.6 - - - +
405J THR* 3.5 24.9 - - - +
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Residues in contact with LEU 480 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476I LEU* 2.9 35.3 + - + +
477I ASN* 3.6 9.0 - - - +
479I ILE* 1.3 80.1 - - + +
481I GLN* 1.3 58.9 + - - +
483I ALA* 3.2 8.6 + - + +
484I LYS* 2.9 40.0 + - - +
160J PHE* 3.5 44.9 - - + -
165J SER* 5.1 0.7 - - - +
399J ILE* 4.8 1.5 - - - +
400J LEU* 3.6 40.6 - - + -
403J LEU* 3.8 13.2 - - + -
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Residues in contact with GLN 481 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477I ASN* 2.9 32.6 + - - +
478I SER* 3.1 25.3 - - - +
480I LEU* 1.3 73.8 - - - +
482I HIS* 1.3 63.4 + - - +
484I LYS* 3.0 30.6 - - + +
485I ASP* 2.8 33.3 + - - +
165J SER* 5.1 1.8 + - - -
----------------------------------------------------------
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Residues in contact with HIS 482 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478I SER 2.9 8.8 + - - +
479I ILE* 3.1 33.0 + - + +
481I GLN* 1.3 82.4 - - - +
483I ALA* 1.3 71.6 + - - +
485I ASP* 3.1 20.3 - - + +
486I PHE* 3.0 32.9 + + + +
402J SER* 4.7 11.4 - - - -
403J LEU* 4.0 18.8 - - + +
----------------------------------------------------------
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Residues in contact with ALA 483 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479I ILE 2.9 12.7 + - - +
480I LEU* 3.2 13.0 + - - +
482I HIS* 1.3 82.4 + - - +
484I LYS* 1.3 59.5 + - - +
486I PHE* 3.1 7.8 + - - -
487I LYS 2.9 21.8 + - - -
399J ILE* 3.0 48.5 - - + +
402J SER* 5.7 0.7 - - - -
403J LEU* 3.8 13.9 - - + -
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Residues in contact with LYS 484 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477I ASN 4.5 1.2 + - - -
480I LEU* 2.9 27.7 + - - +
481I GLN* 3.0 37.2 - - + +
483I ALA* 1.3 75.3 - - - +
485I ASP* 1.3 66.7 - - - +
487I LYS* 3.1 8.9 + - - +
488I GLU* 2.9 33.5 + - - +
491I ARG* 4.2 5.4 + - - +
160J PHE* 4.2 15.0 - - - +
163J GLY* 3.5 46.2 + - - +
164J ARG* 4.2 1.5 - - - +
165J SER* 3.9 18.4 + - - -
399J ILE* 5.0 3.1 - - + -
----------------------------------------------------------
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Residues in contact with ASP 485 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481I GLN 2.8 14.3 - - - +
482I HIS* 3.1 24.2 - - + +
484I LYS* 1.3 78.8 - - - +
486I PHE* 1.3 57.1 + - - +
488I GLU* 3.1 26.8 - - - +
489I TYR* 3.0 24.8 + - - +
----------------------------------------------------------
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Residues in contact with PHE 486 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482I HIS* 3.0 21.0 + + + +
483I ALA* 3.1 18.4 - - - +
484I LYS 3.1 0.2 - - - -
485I ASP* 1.3 75.9 - - - +
487I LYS* 1.3 62.8 + - - +
489I TYR* 3.1 29.5 + + + +
490I HIS* 3.0 30.0 + + - +
29J GLY* 4.7 17.5 - - - -
399J ILE* 4.0 16.4 - - + -
402J SER* 4.3 20.4 - - - -
----------------------------------------------------------
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Residues in contact with LYS 487 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483I ALA 2.9 7.8 + - - +
484I LYS* 3.1 9.1 + - - +
486I PHE* 1.3 77.7 - - - +
488I GLU* 1.3 62.2 + - - +
489I TYR 3.2 0.2 - - - -
490I HIS* 3.1 37.2 + - + +
491I ARG* 2.9 40.7 + - - +
29J GLY* 3.5 13.5 + - - -
30J GLU 3.1 31.5 + - - +
31J ASP* 5.1 4.4 - - - +
395J ILE* 4.9 15.3 - - + +
398J SER* 4.9 1.6 + - - -
399J ILE* 3.5 42.1 - - + +
----------------------------------------------------------
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Residues in contact with GLU 488 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484I LYS* 2.9 29.2 + - - +
485I ASP* 3.1 29.4 + - - +
487I LYS* 1.3 79.5 - - - +
489I TYR* 1.3 56.0 + - - +
490I HIS 3.0 0.2 - - - -
491I ARG* 3.1 37.7 + - - +
492I SER* 2.9 24.3 + - - -
----------------------------------------------------------
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Residues in contact with TYR 489 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485I ASP 3.0 12.4 + - - +
486I PHE* 3.1 32.7 + + + +
488I GLU* 1.3 75.2 - - - +
490I HIS* 1.3 72.6 + + - +
492I SER* 2.5 36.4 + - - -
493I VAL* 3.1 15.7 + - + +
496I LYS* 5.2 12.3 + - - -
372K ARG* 3.3 47.7 - - + +
----------------------------------------------------------
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Residues in contact with HIS 490 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486I PHE* 3.0 20.2 + + - -
487I LYS* 3.3 38.6 - - + +
488I GLU 3.0 0.4 - - - -
489I TYR* 1.3 88.9 - + - +
491I ARG* 1.3 58.9 + - - +
492I SER 3.1 0.2 - - - -
493I VAL* 3.1 20.2 + - + +
494I THR* 2.9 28.8 + - - +
29J GLY 3.1 19.4 + - - -
30J GLU* 4.1 7.9 - - - -
31J ASP* 3.3 48.6 + - + +
371K HIS 5.6 3.6 + - - -
372K ARG 5.7 5.2 - - - -
----------------------------------------------------------
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Residues in contact with ARG 491 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484I LYS* 4.2 11.9 + - - +
487I LYS* 2.9 27.2 + - - +
488I GLU* 3.2 42.0 + - - +
490I HIS* 1.3 75.2 - - - +
492I SER* 1.3 59.4 + - - +
494I THR* 2.3 35.0 + - + +
495I GLY* 3.0 8.1 + - - -
31J ASP* 4.5 2.2 + - - +
161J ALA 5.6 4.0 + - - -
----------------------------------------------------------
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Residues in contact with SER 492 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488I GLU 2.9 12.7 + - - -
489I TYR* 2.5 38.3 + - - -
490I HIS 3.1 0.2 - - - -
491I ARG* 1.3 76.0 - - - +
493I VAL* 1.3 59.8 + - - +
495I GLY* 3.1 3.3 + - - +
496I LYS* 2.9 34.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL 493 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489I TYR* 3.1 17.2 + - + +
490I HIS* 3.1 30.2 + - + +
492I SER* 1.3 79.8 + - - +
494I THR* 1.3 73.4 + - + +
496I LYS* 3.2 17.4 + - + +
497I ILE* 2.9 41.8 + - + +
31J ASP* 5.5 2.2 - - + +
372K ARG* 4.8 26.7 - - + +
----------------------------------------------------------
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Residues in contact with THR 494 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490I HIS 2.9 17.5 + - - +
491I ARG* 2.3 32.7 + - + +
493I VAL* 1.3 77.2 - - + +
495I GLY* 1.3 67.5 + - - +
497I ILE* 3.2 17.2 + - + +
498I GLN* 3.0 21.0 + - - +
31J ASP* 4.0 21.1 - - - +
169K TYR* 5.8 5.4 - - + +
----------------------------------------------------------
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Residues in contact with GLY 495 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491I ARG 3.0 7.4 + - - -
492I SER* 3.1 4.9 + - - -
493I VAL 3.1 0.4 - - - -
494I THR* 1.3 83.6 + - - +
496I LYS* 1.3 65.9 + - - +
498I GLN* 3.1 9.4 + - - +
499I LYS* 3.0 22.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 496 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489I TYR* 5.2 14.1 + - - -
492I SER* 2.9 20.8 + - - +
493I VAL* 3.2 21.8 + - + +
495I GLY* 1.3 72.8 - - - +
497I ILE* 1.3 69.1 + - + +
499I LYS* 3.1 15.5 + - - +
500I LEU* 2.9 29.0 + - + +
355K MET* 4.7 26.9 - - + -
372K ARG* 5.9 3.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE 497 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493I VAL* 2.9 34.5 + - + +
494I THR* 3.2 15.5 - - - +
495I GLY 3.1 0.2 - - - -
496I LYS* 1.3 81.6 - - + +
498I GLN* 1.3 65.3 + - - +
500I LEU* 3.2 7.8 + - - +
501I THR* 2.9 37.5 + - + +
167K GLU 5.1 1.3 - - - +
168K GLY 4.6 8.3 - - - +
169K TYR* 3.9 42.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 498 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494I THR 3.0 13.7 + - - +
495I GLY* 3.3 12.1 - - - +
496I LYS 3.1 0.2 - - - -
497I ILE* 1.3 81.9 - - - +
499I LYS* 1.3 63.5 - - - +
501I THR* 2.3 33.2 + - - -
502I LYS* 2.9 30.1 + - + +
167K GLU* 3.5 25.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 499 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495I GLY 3.0 13.2 + - - +
496I LYS* 3.1 17.5 + - - +
498I GLN* 1.3 74.3 - - - +
500I LEU* 1.3 68.3 + - - +
502I LYS* 3.1 24.0 + - - +
503I ALA* 3.0 22.4 + - + +
351K THR* 5.4 12.8 - - + +
354K GLN* 3.3 27.0 - - - +
355K MET* 3.5 21.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 500 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496I LYS* 2.9 16.8 + - + +
497I ILE* 3.5 10.8 - - - +
499I LYS* 1.3 78.5 - - + +
501I THR* 1.3 58.8 + - + +
503I ALA* 3.2 5.9 + - - +
504I VAL* 2.9 33.2 + - + +
143K TYR* 5.2 2.0 - - + +
346K LEU* 6.2 1.1 - - + -
349K LEU* 4.2 6.7 - - + -
351K THR* 3.7 28.9 - - - +
352K PHE* 3.7 38.4 - - + -
355K MET* 4.1 23.8 - - + -
----------------------------------------------------------
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Residues in contact with THR 501 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497I ILE* 2.9 27.4 + - + +
498I GLN* 2.3 42.3 + - - -
500I LEU* 1.3 75.9 - - + +
502I LYS* 1.3 61.3 + - - +
504I VAL* 3.2 11.3 + - - +
505I ALA* 2.9 26.3 + - - +
143K TYR* 3.4 21.8 - - - +
148K THR* 4.3 12.7 + - - +
167K GLU 3.7 20.1 - - - +
168K GLY* 3.7 10.3 - - - -
----------------------------------------------------------
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Residues in contact with LYS 502 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498I GLN* 2.9 32.4 + - + +
499I LYS* 3.4 26.0 - - - +
501I THR* 1.3 83.5 + - - +
503I ALA* 1.3 59.3 + - - +
505I ALA* 3.1 8.7 - - - +
506I THR* 3.0 32.2 + - + +
28X G 4.0 24.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 503 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499I LYS* 3.0 9.4 + - + +
500I LEU 3.5 8.1 - - - +
502I LYS* 1.3 79.6 - - - +
504I VAL* 1.3 65.3 + - - +
506I THR* 2.8 23.1 + - - +
507I TYR* 2.9 13.3 + - - +
349K LEU* 3.6 27.4 - - + +
351K THR* 3.6 22.2 - - + +
----------------------------------------------------------
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Residues in contact with VAL 504 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500I LEU* 2.9 18.4 + - + +
501I THR* 3.2 12.1 - - - +
503I ALA* 1.3 77.9 - - - +
505I ALA* 1.3 67.7 - - - +
507I TYR* 3.2 6.2 + - - +
508I HIS* 3.0 56.9 + - + +
143K TYR* 3.3 44.6 - - + -
148K THR* 5.1 6.5 - - - +
346K LEU* 3.6 20.0 - - + -
349K LEU* 4.3 8.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 505 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501I THR 2.9 13.1 + - - +
502I LYS* 3.1 14.4 - - - +
504I VAL* 1.3 82.9 - - - +
506I THR* 1.3 64.8 + - + +
507I TYR 3.1 0.2 + - - -
508I HIS* 3.2 8.1 + - - +
509I ALA* 2.9 25.4 + - - +
146K GLY 5.2 2.9 - - - -
148K THR* 5.4 10.8 - - + -
----------------------------------------------------------
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Residues in contact with THR 506 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502I LYS* 3.0 15.0 + - + +
503I ALA* 2.8 25.1 + - - -
505I ALA* 1.3 80.2 - - + +
507I TYR* 1.3 56.3 + - - +
509I ALA* 3.9 6.8 - - - +
510I ASN* 3.1 30.5 + - - +
349K LEU* 5.6 0.7 - - - +
----------------------------------------------------------
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Residues in contact with TYR 507 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503I ALA 2.9 13.2 + - - +
504I VAL* 3.5 11.4 - - - +
505I ALA 3.0 0.2 - - - -
506I THR* 1.3 74.8 + - - +
508I HIS* 1.4 72.4 + + + +
509I ALA 3.1 1.1 - - - -
510I ASN* 2.9 23.7 + - - +
511I THR* 2.4 46.5 + - + +
345K ILE* 3.5 41.5 - - + +
348K SER* 3.2 29.1 + - - -
349K LEU* 4.9 17.5 - - + -
----------------------------------------------------------
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Residues in contact with HIS 508 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
504I VAL* 3.0 46.1 + - + +
505I ALA* 4.0 3.4 - - - +
507I TYR* 1.4 79.3 - + + +
509I ALA* 1.3 64.4 + - - +
511I THR* 3.2 8.3 + - - -
512I GLU* 3.0 32.0 + - + +
143K TYR* 3.1 28.6 + + + +
146K GLY* 3.2 46.2 - - - +
147K ARG 5.7 0.2 - - - -
345K ILE* 3.6 31.2 - - + +
346K LEU* 5.8 2.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA 509 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
505I ALA 2.9 16.9 + - - +
506I THR* 3.9 7.2 - - - +
508I HIS* 1.3 80.8 - - - +
510I ASN* 1.3 57.7 + - - +
512I GLU* 3.1 7.4 + - - +
513I ARG* 2.9 36.9 + - + +
----------------------------------------------------------
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Residues in contact with ASN 510 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
506I THR 3.1 12.5 + - - +
507I TYR* 2.9 43.6 + - - +
509I ALA* 1.3 78.8 - - - +
511I THR* 1.3 64.8 + - - +
513I ARG* 4.6 4.4 - - - +
514I GLU* 3.3 26.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 511 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
507I TYR* 2.4 50.9 + - + +
508I HIS* 3.3 8.8 + - - -
509I ALA 3.0 0.2 - - - -
510I ASN* 1.3 78.5 + - - +
512I GLU* 1.3 70.4 + - - +
513I ARG 3.2 0.2 + - - -
514I GLU* 3.2 6.8 + - - +
515I GLN* 2.9 28.2 + - - +
345K ILE* 6.2 2.9 - - + -
----------------------------------------------------------
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Residues in contact with GLU 512 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
508I HIS* 3.0 22.3 + - + +
509I ALA* 3.1 7.6 + - - +
511I THR* 1.3 79.6 - - - +
513I ARG* 1.3 79.9 + - + +
515I GLN* 2.9 27.4 - - - +
516I LYS 2.9 5.9 + - - -
145K SER 4.9 8.5 - - - +
146K GLY* 5.6 1.7 - - - -
----------------------------------------------------------
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Residues in contact with ARG 513 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509I ALA* 2.9 18.8 + - + +
510I ASN* 4.6 4.0 - - - +
511I THR 3.2 0.2 - - - -
512I GLU* 1.3 99.1 + - + +
514I GLU* 1.3 59.2 + - - +
515I GLN 3.0 5.4 - - - -
516I LYS* 2.9 59.8 - - + +
517I LYS* 2.9 6.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 514 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510I ASN* 3.3 20.3 + - - +
511I THR* 3.2 7.7 + - - +
513I ARG* 1.3 75.2 - - - +
515I GLN* 1.3 78.5 + - - +
516I LYS 2.9 0.7 - - - -
517I LYS* 3.1 26.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 515 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511I THR* 2.9 19.1 + - - +
512I GLU* 2.9 23.6 - - - +
514I GLU* 1.3 89.1 + - - +
516I LYS* 1.3 66.3 + - - +
517I LYS 3.0 4.9 + - - -
----------------------------------------------------------
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Residues in contact with LYS 516 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512I GLU 2.9 8.4 + - - +
513I ARG* 2.9 64.1 + - - +
515I GLN* 1.3 82.0 - - - +
517I LYS* 1.3 74.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 517 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513I ARG 2.9 14.2 + - - +
514I GLU* 3.1 29.3 + - + +
515I GLN 3.0 5.6 - - - +
516I LYS* 1.3 95.5 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il