Contacts of the helix formed by residues 50 - 78 (chain G) in PDB entry 6M4G
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 50 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48G SER* 2.9 4.1 + - - -
49G ARG* 1.3 85.9 - - + +
51G ALA* 1.3 62.6 + - - +
52G PRO 3.5 1.6 - - - -
53G VAL* 3.0 30.3 - - - +
54G TYR* 3.4 5.0 + - - +
90H THR* 5.5 2.1 - - - +
91H SER* 3.7 18.2 + - - -
118H VAL* 3.8 8.4 - - - +
121H TYR* 3.8 27.1 - - + -
122H THR* 4.3 15.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 51 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38G LEU* 5.8 2.7 - - + -
47G LEU* 5.3 3.6 - - + -
48G SER* 2.8 17.2 + - - +
50G THR* 1.3 80.0 - - - +
52G PRO* 1.3 66.1 - - + +
54G TYR* 3.3 4.0 + - - +
55G LEU* 3.0 27.3 + - - +
89H ILE* 3.5 14.1 - - + +
90H THR 3.5 24.2 - - - +
91H SER* 4.0 7.4 - - - +
94H ILE* 4.3 10.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 52 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21G ARG* 5.3 3.6 - - - +
31G VAL* 4.1 8.0 - - + +
34G VAL* 3.7 23.8 - - + +
35G GLU* 4.0 35.4 - - + +
38G LEU* 4.8 7.4 - - + -
47G LEU* 5.2 6.3 - - + -
48G SER 4.0 12.3 - - - +
49G ARG 4.1 7.4 - - - +
50G THR 3.7 1.3 - - - -
51G ALA* 1.3 92.3 - - + +
53G VAL* 1.3 64.6 + - + +
55G LEU* 4.3 4.9 - - + +
56G ALA* 2.9 31.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 53 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21G ARG* 4.8 5.4 - - - +
25G ALA* 5.8 0.9 - - + -
27G LEU* 4.3 9.2 - - + +
31G VAL* 4.1 26.9 - - + -
49G ARG 4.7 3.1 - - - +
50G THR* 3.0 34.8 - - - +
52G PRO* 1.3 78.1 - - + +
54G TYR* 1.3 57.8 + - - +
56G ALA* 3.8 1.4 - - - +
57G ALA* 2.9 30.2 + - - +
117H ALA* 4.7 3.0 - - - +
118H VAL* 3.5 24.7 - - + +
121H TYR* 4.2 39.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 54 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50G THR 3.7 2.2 - - - +
51G ALA 3.3 7.6 + - - +
52G PRO 3.3 0.2 - - - -
53G VAL* 1.3 82.4 - - - +
55G LEU* 1.3 57.0 + - - +
57G ALA* 3.2 2.1 + - - +
58G VAL* 3.0 30.0 + - + +
91H SER* 3.4 23.3 - - - +
94H ILE* 3.6 22.9 - - + -
95H GLN* 3.3 43.8 - - + +
98H VAL* 4.6 8.1 - - + -
110H ALA 4.8 2.5 - - - -
111H VAL* 3.1 28.1 + - - +
114H GLY* 3.0 47.8 - - - -
115H THR* 3.2 13.5 - - + -
118H VAL* 3.6 15.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 55 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34G VAL* 5.2 4.9 - - + -
38G LEU* 4.5 17.3 - - + -
51G ALA 3.0 17.2 + - - +
52G PRO* 4.0 5.8 - - + +
53G VAL 3.3 0.2 - - - -
54G TYR* 1.3 76.9 - - - +
56G ALA* 1.3 57.7 + - - +
58G VAL* 3.0 19.6 - - + +
59G ILE* 3.0 43.8 + - + +
70H PHE* 3.4 35.4 - - + +
73H ILE* 3.7 29.8 - - + -
74H ALA* 5.1 4.3 - - + -
94H ILE* 3.9 18.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 56 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27G LEU* 5.1 3.4 - - + -
29G PHE* 4.1 22.3 - - + +
31G VAL* 4.4 16.4 - - + -
34G VAL* 4.3 20.4 - - + +
52G PRO 2.9 19.6 + - - +
53G VAL 4.0 2.7 - - - +
55G LEU* 1.3 77.0 - - - +
57G ALA* 1.3 58.2 + - - +
59G ILE* 4.5 3.6 - - - +
60G GLU* 2.9 33.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 57 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27G LEU* 4.2 9.4 - - + +
53G VAL 2.9 13.8 + - - +
54G TYR 3.8 3.8 - - - +
56G ALA* 1.3 77.6 - - - +
58G VAL* 1.3 59.4 + - - +
60G GLU* 3.7 9.3 - - - +
61G TYR* 2.9 27.5 + - - +
113H GLU* 3.8 16.0 - - + +
114H GLY* 4.1 2.7 - - - -
117H ALA* 3.4 34.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 58 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54G TYR* 3.0 17.7 + - + +
55G LEU* 3.0 37.2 - - + +
57G ALA* 1.3 75.6 - - - +
59G ILE* 1.3 66.5 + - + +
61G TYR* 3.1 5.4 + - - +
62G LEU* 2.9 33.6 + - + +
73H ILE* 4.5 4.5 - - + -
94H ILE* 4.9 1.1 - - + -
98H VAL* 4.0 22.4 - - + -
102H LEU* 4.8 0.4 - - + -
110H ALA* 3.2 43.7 - - + +
114H GLY* 4.9 0.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 59 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29G PHE* 3.8 13.7 - - + -
34G VAL* 5.4 6.1 - - + -
55G LEU* 3.0 34.6 + - + +
56G ALA* 4.3 3.6 - - - +
58G VAL* 1.3 77.6 - - + +
60G GLU* 1.3 58.2 + - - +
62G LEU* 3.3 7.1 + - + +
63G THR* 3.0 29.1 + - + +
37H TYR* 6.0 0.9 - - + -
65H PHE* 6.1 0.2 - - + -
66H VAL* 3.7 32.5 - - + -
69H ILE* 4.2 19.7 - - + -
70H PHE* 3.8 42.0 - - + +
73H ILE* 4.8 3.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 60 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26G GLU 5.0 0.3 - - - +
27G LEU* 3.1 38.8 - - - +
28G SER* 2.6 40.7 + - - -
29G PHE* 3.8 16.0 + - + +
56G ALA 2.9 21.0 + - - +
57G ALA* 3.7 4.2 - - - +
59G ILE* 1.3 78.1 - - - +
61G TYR* 1.3 57.4 + - - +
63G THR* 2.9 19.3 + - - +
64G ALA* 2.9 18.9 + - + +
44H VAL* 4.6 10.5 - - + +
47H GLN* 4.7 2.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 61 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57G ALA 2.9 17.8 + - - +
58G VAL* 3.1 5.6 + - - +
60G GLU* 1.3 78.3 - - - +
62G LEU* 1.3 68.1 + - + +
64G ALA* 3.4 6.8 + - + +
65G LYS* 2.9 67.2 + - + +
106H LEU* 4.4 20.6 - - + +
109H HIS* 3.5 35.9 + + + +
110H ALA* 4.3 16.2 - - + -
113H GLU* 3.8 33.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 62 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58G VAL* 2.9 26.1 + - + +
59G ILE* 3.9 7.0 - - + +
61G TYR* 1.3 90.4 - - + +
63G THR* 1.3 58.7 + - - +
65G LYS* 3.3 4.3 + - + +
66G VAL* 2.9 31.4 + - - +
100G LEU* 5.1 10.3 - - + -
65H PHE* 4.3 18.4 - - + -
69H ILE* 4.0 33.2 - - + -
73H ILE* 5.2 1.3 - - + -
102H LEU* 3.9 32.8 - - + -
106H LEU* 4.1 17.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 63 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29G PHE* 3.5 19.2 - - + -
59G ILE* 3.0 18.6 + - + +
60G GLU* 2.9 21.0 + - - -
62G LEU* 1.3 77.0 - - - +
64G ALA* 1.3 56.9 + - - +
65G LYS 3.1 0.2 - - - -
66G VAL* 3.2 8.2 - - - +
67G LEU* 2.9 36.2 + - - +
41H VAL* 5.0 2.9 - - + -
44H VAL* 4.1 14.2 - - - +
62H MET* 4.5 11.2 - - + -
65H PHE* 4.6 4.0 - - + -
66H VAL* 3.5 32.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 64 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60G GLU* 2.9 20.8 + - + +
61G TYR* 3.5 7.2 - - + +
63G THR* 1.3 75.8 + - - +
65G LYS* 1.3 58.8 + - - +
67G LEU* 5.1 1.1 - - - -
68G GLU* 3.1 25.3 - - - +
44H VAL* 3.7 23.3 - - + -
48H VAL* 4.2 12.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 65 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61G TYR* 2.9 51.9 + - + +
62G LEU* 3.8 6.5 - - + +
64G ALA* 1.3 81.8 - - - +
66G VAL* 1.3 62.4 + - - +
68G GLU* 3.9 14.1 + - + +
69G LEU* 3.3 32.4 + - - +
96G LEU* 3.3 47.1 - - + +
97G LEU* 4.5 7.9 - - + -
106H LEU* 4.9 4.0 - - + -
109H HIS* 5.5 3.6 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 66 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62G LEU 2.9 19.5 + - - +
63G THR* 3.2 5.8 - - - +
65G LYS* 1.3 75.1 - - - +
67G LEU* 1.3 63.1 + - + +
68G GLU 3.2 0.2 - - - -
69G LEU* 3.1 6.4 + - - +
70G ALA* 2.9 25.7 + - + +
87G LEU* 5.6 3.4 - - + -
90G VAL* 5.1 6.7 - - + +
91G VAL* 4.3 23.6 - - + -
97G LEU* 4.6 14.3 - - + +
101G PHE* 5.6 4.9 - - + -
62H MET* 3.0 44.0 - - + -
65H PHE* 4.3 11.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 67 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63G THR* 2.9 19.8 + - - +
64G ALA* 5.1 0.2 - - - -
66G VAL* 1.3 74.2 - - + +
68G GLU* 1.3 59.8 + - - +
69G LEU 3.2 0.2 - - - -
70G ALA* 4.0 13.6 - - + +
71G GLY* 2.9 23.6 + - - -
82G ILE* 4.8 6.5 - - + -
87G LEU* 5.7 1.6 - - + -
41H VAL* 3.3 41.5 - - + +
44H VAL* 4.2 9.0 - - + -
45H LEU* 4.0 21.6 - - + +
48H VAL* 4.4 7.6 - - + -
49H HIS* 3.6 6.8 - - - -
54H ILE* 4.1 15.7 - - + -
62H MET* 3.6 33.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 68 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64G ALA 3.1 24.4 + - - +
65G LYS* 3.9 13.1 + - + +
66G VAL 3.2 0.8 - - - -
67G LEU* 1.3 78.6 - - - +
69G LEU* 1.3 80.1 + - - +
72G ASN* 2.8 47.2 + - - +
48H VAL* 3.3 26.3 - - + +
49H HIS* 3.0 12.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 69 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65G LYS* 3.3 28.5 + - + +
66G VAL* 3.1 7.4 + - - +
68G GLU* 1.3 92.5 - - - +
70G ALA* 1.3 59.8 + - - +
72G ASN* 3.7 9.5 - - + +
73G GLU* 2.8 40.8 + - + +
90G VAL* 4.5 13.5 - - + -
94G ASP* 3.3 42.0 - - + +
96G LEU* 6.1 0.2 - - + -
97G LEU* 3.6 15.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 70 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66G VAL* 2.9 17.3 + - + +
67G LEU* 4.0 11.4 - - + +
69G LEU* 1.3 78.1 - - - +
71G GLY* 1.3 56.3 + - - +
73G GLU* 3.4 2.0 + - - +
74G ALA* 2.9 29.5 + - - +
82G ILE* 3.9 33.0 - - + +
86G LEU* 4.6 7.9 - - + +
87G LEU* 5.0 6.3 - - + -
90G VAL* 4.5 18.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 71 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67G LEU 2.9 12.0 + - - -
70G ALA* 1.3 74.5 - - - +
72G ASN* 1.3 60.3 + - - +
74G ALA* 4.0 0.4 - - - +
75G GLN* 3.2 28.6 + - - +
82G ILE* 4.1 3.2 - - - +
49H HIS* 3.4 28.1 - - - -
52H THR* 4.1 22.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 72 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68G GLU* 2.8 42.5 + - - +
69G LEU* 3.2 13.5 + - + +
71G GLY* 1.3 76.3 - - - +
73G GLU* 1.3 64.3 + - + +
75G GLN* 3.0 16.7 - - - +
76G ASN* 2.9 28.5 + - - +
49H HIS* 2.9 28.5 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 73 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69G LEU* 2.8 26.1 + - + +
70G ALA 4.0 2.7 - - - +
72G ASN* 1.3 79.9 - - + +
74G ALA* 1.3 61.0 + - - +
75G GLN 3.3 0.2 - - - -
76G ASN* 4.0 21.8 + - - +
77G SER* 2.9 32.4 + - - -
86G LEU* 4.4 5.2 - - + +
89G MET* 3.6 26.4 - - + +
90G VAL* 3.5 21.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 74 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70G ALA 2.9 17.6 + - - +
71G GLY 4.3 1.1 - - - +
72G ASN 3.4 0.4 - - - -
73G GLU* 1.3 76.3 - - - +
75G GLN* 1.3 58.7 + - - +
77G SER* 4.2 0.2 - - - -
78G GLY 2.9 3.3 + - - -
79G GLU* 2.4 49.4 + - + +
81G ASN 3.8 22.7 - - - +
82G ILE* 4.5 0.7 - - + -
86G LEU* 3.9 10.9 - - + +
52H THR* 4.1 18.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 75 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71G GLY 3.2 16.2 + - - +
72G ASN* 3.0 40.4 + - - +
74G ALA* 1.3 78.6 - - - +
76G ASN* 1.3 62.8 + - - +
78G GLY* 3.7 9.5 + - - +
79G GLU 4.4 2.5 - - - -
49H HIS* 3.5 12.0 + - - -
52H THR* 4.5 9.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 76 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72G ASN 2.9 20.5 + - - +
73G GLU* 4.0 24.5 + - - +
75G GLN* 1.3 78.0 - - - +
77G SER* 1.3 63.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 77 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73G GLU* 2.9 18.2 + - - -
74G ALA* 4.2 0.2 - - - -
76G ASN* 1.3 78.2 - - - +
78G GLY* 1.3 59.4 + - - +
79G GLU* 3.2 28.6 + - - +
86G LEU* 4.6 2.3 - - - +
89G MET* 5.1 10.1 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 78 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74G ALA 2.9 6.5 + - - -
75G GLN* 3.7 8.7 + - - -
76G ASN 3.4 2.6 - - - -
77G SER* 1.3 78.7 - - - +
79G GLU* 1.3 67.7 + - - +
80G ARG* 3.8 0.9 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il