Contacts of the helix formed by residues 1066 - 1102 (chain D) in PDB entry 6M6A
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR1066 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498C GLN* 4.0 11.5 + - + -
500C ASN* 4.4 20.9 - - - +
906C PHE* 3.5 10.4 - - - -
1065D LEU* 1.3 78.7 - - - +
1067D VAL* 1.3 65.2 + - - +
1068D LEU* 3.0 11.8 + - - +
1069D GLU* 2.3 48.9 + - - +
1070D TYR* 3.3 13.5 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1067 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435C TYR* 3.7 19.0 - - + +
498C GLN* 3.3 30.3 - - - +
536C PRO* 4.3 24.5 - - + +
539C VAL* 4.9 13.2 - - + -
540C PHE* 5.9 2.5 - - + -
906C PHE* 3.6 37.2 - - + -
1066D THR* 1.3 78.5 + - - +
1068D LEU* 1.3 61.0 + - - +
1070D TYR* 3.6 5.4 - - - +
1071D PHE* 2.9 30.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1068 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435C TYR* 4.1 25.6 - - + +
498C GLN* 3.4 27.8 - - - +
514C VAL* 4.2 22.2 - - + +
515C ALA* 5.7 0.7 - - - +
516C ARG* 4.2 19.3 - - + +
521C PRO* 4.2 26.7 - - + -
1066D THR* 3.0 2.2 + - - +
1067D VAL* 1.3 78.3 - - - +
1069D GLU* 1.3 65.2 + - - +
1071D PHE* 3.1 9.9 + - + +
1072D ILE* 2.9 33.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1069 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1056D PRO 6.0 0.4 - - - -
1057D VAL* 3.7 30.6 - - + +
1065D LEU* 3.2 34.3 - - + +
1066D THR* 2.3 61.3 + - - +
1068D LEU* 1.3 71.7 + - - +
1070D TYR* 1.3 59.7 + - - +
1072D ILE* 3.2 13.6 + - - +
1073D SER* 2.9 29.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1070 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C VAL* 4.9 8.0 - - + +
540C PHE* 4.1 32.3 - + - -
550C LEU* 3.6 34.0 + - + +
551C GLU* 5.3 4.3 - - - -
553C ASP 3.8 10.9 + - - -
555C ALA* 3.3 38.1 + - + -
558C ALA* 4.1 11.1 - - - +
906C PHE* 5.3 7.0 - + + -
1042D ARG* 5.6 3.8 - - - -
1061D PHE* 5.3 6.3 - + - -
1065D LEU* 5.3 9.4 - - + -
1066D THR 3.3 18.6 + - - +
1067D VAL* 3.6 6.7 + - - +
1068D LEU 3.1 0.2 - - - -
1069D GLU* 1.3 82.7 - - + +
1071D PHE* 1.3 59.2 + - - +
1073D SER* 2.8 21.7 + - - -
1074D SER* 3.0 22.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1071 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430C VAL* 4.2 11.2 - - + -
431C HIS 3.9 14.1 - - - -
432C ARG* 4.1 14.4 - - + -
434C HIS 4.3 3.4 - - - -
435C TYR* 3.6 58.6 - + + -
440C PRO* 4.3 26.5 - - + -
539C VAL* 4.7 8.1 - - + -
540C PHE* 6.1 0.7 - + - -
1067D VAL 2.9 15.2 + - - +
1068D LEU* 3.2 13.2 - - + +
1070D TYR* 1.3 77.1 - - - +
1072D ILE* 1.3 66.1 + - + +
1074D SER* 2.6 20.0 + - - -
1075D HIS* 3.1 31.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1072 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519C GLY 6.1 0.4 - - - +
521C PRO* 5.8 7.6 - - + -
1045D MET* 3.5 29.5 - - + +
1046D GLN 5.0 0.2 - - - +
1053D PHE* 3.6 49.4 - - + -
1057D VAL* 5.6 4.0 - - + -
1068D LEU* 2.9 24.4 + - + +
1069D GLU* 3.3 16.4 - - + +
1070D TYR 3.1 0.2 - - - -
1071D PHE* 1.3 86.2 - - + +
1073D SER* 1.3 61.0 + - - +
1075D HIS* 3.0 30.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1073 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1042D ARG* 3.5 42.1 + - - -
1045D MET* 3.9 20.2 - - - +
1057D VAL* 5.6 2.5 - - - -
1069D GLU 2.9 14.4 + - - -
1070D TYR* 2.8 25.5 + - - -
1072D ILE* 1.3 75.0 - - - +
1074D SER* 1.3 61.8 + - - +
1075D HIS 3.2 0.3 + - - -
1076D GLY* 3.2 4.2 + - - -
1077D ALA* 3.1 20.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1074 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430C VAL* 4.8 5.3 - - - +
440C PRO* 4.8 20.7 - - - +
441C VAL* 5.8 5.2 - - - -
555C ALA* 5.1 10.3 - - - -
1070D TYR* 3.0 13.8 + - - -
1071D PHE* 2.6 37.1 + - - -
1073D SER* 1.3 72.1 + - - +
1075D HIS* 1.3 57.5 + - - +
1077D ALA* 3.5 10.7 - - - +
1078D ARG* 2.8 32.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1075 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429C ASP* 3.7 8.4 + - - +
430C VAL* 3.1 43.1 - - + +
431C HIS 4.8 2.9 - - - -
432C ARG* 5.0 3.1 - - + +
1046D GLN* 4.3 14.4 - - - +
1047D LYS 5.3 0.4 - - - -
1048D PRO* 3.3 32.2 - - + +
1053D PHE* 4.6 8.4 - + - -
1071D PHE* 3.1 38.3 + + - -
1072D ILE* 3.0 33.3 - - + +
1073D SER 3.1 0.2 - - - -
1074D SER* 1.3 79.1 + - - +
1076D GLY* 1.3 58.0 + - - +
1078D ARG* 3.4 2.8 + - - +
1079D LYS* 2.9 28.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1076 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1045D MET* 3.5 18.0 - - - +
1046D GLN* 5.0 8.0 - - - +
1073D SER 3.2 6.4 + - - -
1075D HIS* 1.3 76.5 - - - +
1077D ALA* 1.3 60.8 + - - +
1079D LYS* 3.5 8.6 - - - +
1080D GLY* 2.9 25.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1077 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555C ALA* 4.5 11.9 - - + -
556C ASN* 3.3 39.3 - - - +
1042D ARG* 5.7 3.4 - - - +
1073D SER 3.1 13.9 + - - +
1074D SER* 3.5 14.4 - - - +
1075D HIS 3.2 0.2 - - - -
1076D GLY* 1.3 76.3 - - - +
1078D ARG* 1.3 62.6 + - - +
1080D GLY* 3.3 2.6 + - - -
1081D GLY* 3.0 19.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1078 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428C ARG* 2.3 44.3 + - - +
429C ASP* 4.3 21.0 + - - +
430C VAL* 4.9 11.0 - - + +
439C CYS 5.7 0.2 + - - -
440C PRO* 3.5 25.0 + - - +
441C VAL 5.6 0.4 + - - -
443C THR* 3.9 26.2 + - - +
449C ILE* 5.0 11.6 - - - +
450C GLY* 3.4 27.6 + - - +
453C THR* 5.9 0.6 - - - -
1074D SER 2.8 21.2 + - - +
1075D HIS* 3.8 4.7 - - - +
1077D ALA* 1.3 72.2 - - - +
1079D LYS* 1.3 57.4 + - - +
1081D GLY* 3.4 1.2 + - - -
1082D ALA* 2.9 35.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1079 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425C PHE* 5.4 18.2 - - + -
429C ASP* 3.8 20.6 + - - -
1046D GLN* 4.5 18.6 - - - +
1047D LYS 5.4 0.2 + - - -
1048D PRO* 4.6 13.4 + - - +
1050D GLY* 6.0 1.8 - - - +
1075D HIS 2.9 16.8 + - - +
1076D GLY* 3.5 9.6 - - - +
1078D ARG* 1.3 78.7 - - - +
1080D GLY* 1.3 57.4 + - - +
1082D ALA* 3.7 6.3 - - + +
1083D ASP* 2.9 33.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1080 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1076D GLY 2.9 14.8 + - - -
1077D ALA 3.3 2.4 + - - -
1079D LYS* 1.3 79.6 - - - +
1081D GLY* 1.3 61.2 + - - +
1083D ASP* 3.2 7.3 + - - +
1084D THR* 3.0 30.0 + - - +
1087D ARG* 4.8 0.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1081 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445C GLU* 5.8 0.6 - - - +
449C ILE* 3.8 16.0 - - - +
556C ASN* 5.1 2.4 + - - -
1077D ALA 3.0 14.4 + - - -
1078D ARG* 3.8 2.7 - - - -
1080D GLY* 1.3 73.8 - - - +
1082D ALA* 1.3 60.8 + - - +
1084D THR* 2.5 24.0 + - - -
1085D ALA* 3.0 12.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1082 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425C PHE* 5.4 5.6 - - + -
428C ARG* 4.3 29.5 + - + +
449C ILE* 4.1 12.4 - - + +
1078D ARG* 2.9 24.2 + - + +
1079D LYS* 3.7 8.5 - - + +
1081D GLY* 1.3 74.0 - - - +
1083D ASP* 1.3 57.3 + - - +
1085D ALA* 3.3 4.3 + - - +
1086D LEU* 3.0 36.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1083 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1079D LYS* 2.9 23.5 + - + +
1080D GLY* 3.2 7.8 + - - +
1082D ALA* 1.3 77.7 - - - +
1084D THR* 1.3 56.8 + - - +
1086D LEU* 3.3 19.9 - - - +
1087D ARG* 2.4 61.4 + - - +
1236D LEU 4.2 6.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1084 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1080D GLY 3.0 11.9 + - - +
1081D GLY* 2.5 29.9 + - - -
1083D ASP* 1.3 74.0 - - - +
1085D ALA* 1.3 58.8 + - - +
1087D ARG* 2.9 43.8 + - - +
1088D THR* 3.2 23.2 + - - +
1234D THR* 6.0 0.2 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1085 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445C GLU* 5.6 2.5 - - + +
446C GLY* 4.1 31.0 - - - +
449C ILE* 4.2 14.6 - - + -
1081D GLY 3.0 13.4 + - - +
1082D ALA 3.7 4.5 - - - +
1083D ASP 3.3 0.2 - - - -
1084D THR* 1.3 80.3 + - - +
1086D LEU* 1.3 60.7 + - - +
1088D THR* 3.3 17.3 + - - -
1089D ALA* 4.9 1.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1086 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425C PHE* 3.6 32.5 - - + -
428C ARG* 5.6 11.0 - - - +
1082D ALA* 3.0 21.8 + - + +
1083D ASP* 3.3 32.3 - - + +
1085D ALA* 1.3 76.3 - - - +
1087D ARG* 1.3 67.7 + - + +
1088D THR 3.4 0.4 + - - -
1089D ALA* 4.4 2.0 + - - +
1090D ASP* 4.2 19.9 + - - +
1256D LEU* 5.1 14.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1087 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1083D ASP* 2.4 68.5 + - - +
1084D THR* 2.9 30.5 + - - +
1086D LEU* 1.3 83.3 - - + +
1088D THR* 1.3 67.4 + - - +
1090D ASP* 4.0 1.7 - - - +
1091D SER* 3.0 24.7 + - - -
1233D GLY 3.6 16.6 - - - +
1234D THR* 2.5 42.1 + - - +
1235D GLN* 4.9 1.2 - - - +
1236D LEU* 3.7 22.5 - - - +
1256D LEU* 5.2 12.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1088 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1084D THR* 3.2 16.4 + - - +
1085D ALA* 3.3 15.3 + - - -
1087D ARG* 1.3 75.1 - - + +
1089D ALA* 1.3 69.6 + - - +
1091D SER* 3.2 8.9 + - - -
1092D GLY* 3.1 16.8 + - - -
1234D THR* 5.2 11.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1089 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1085D ALA 4.9 1.5 + - - +
1086D LEU 4.4 2.7 + - - +
1087D ARG 3.6 0.2 - - - -
1088D THR* 1.3 82.7 + - - +
1090D ASP* 1.3 63.8 + - - +
1092D GLY* 3.2 4.9 + - - +
1093D TYR* 2.9 24.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1090 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086D LEU 4.2 16.5 + - - +
1087D ARG* 3.7 2.8 + - - +
1088D THR 3.3 0.2 - - - -
1089D ALA* 1.3 79.8 - - - +
1091D SER* 1.3 61.0 + - - +
1093D TYR* 3.3 20.8 - - + +
1094D LEU* 3.0 27.4 + - - +
1256D LEU* 5.8 12.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1091 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
708D LEU* 6.1 0.3 - - - +
1087D ARG 3.0 16.4 + - - -
1088D THR* 3.2 11.9 + - - -
1090D ASP* 1.3 75.7 - - - +
1092D GLY* 1.3 63.0 + - - +
1094D LEU* 3.3 8.1 + - - +
1095D THR* 3.1 28.1 + - - +
1230D GLY 4.2 5.0 + - - -
1231D GLU 4.5 2.6 + - - -
1233D GLY* 3.2 30.1 + - - -
1234D THR* 3.3 14.5 + - - -
1256D LEU* 5.9 4.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1092 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038C TRP* 5.6 0.9 - - - -
1088D THR 3.1 12.8 + - - -
1089D ALA* 3.2 6.2 + - - -
1091D SER* 1.3 75.2 - - - +
1093D TYR* 1.3 58.9 + - - +
1095D THR* 2.4 25.2 + - - -
1096D ARG* 3.0 12.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1093 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1089D ALA 2.9 12.1 + - - +
1090D ASP* 3.3 25.6 - - + +
1091D SER 3.2 0.4 - - - -
1092D GLY* 1.3 77.8 - - - +
1094D LEU* 1.3 63.9 + - + +
1096D ARG* 3.1 16.8 + - + +
1097D LYS* 2.9 72.0 + - + +
1260D ILE* 6.0 7.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1094 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1090D ASP 3.0 15.7 + - - +
1091D SER* 3.9 6.1 - - - +
1093D TYR* 1.3 81.5 - - + +
1095D THR* 1.3 68.4 + - - +
1097D LYS* 3.0 7.9 + - + +
1098D LEU* 3.0 39.0 + - + +
1229D ILE* 5.0 2.9 - - + +
1230D GLY* 3.8 29.8 - - - +
1233D GLY* 5.7 5.4 - - - -
1256D LEU* 5.6 7.2 - - + -
1259D VAL* 5.0 13.0 - - + -
1260D ILE* 4.7 22.7 - - + -
1263D PHE* 5.6 9.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1095 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035C MET* 6.1 0.7 - - - +
1038C TRP* 4.9 7.3 - - - -
708D LEU* 5.8 8.1 - - + +
1091D SER* 3.1 10.7 + - - +
1092D GLY* 2.4 35.9 + - - -
1094D LEU* 1.3 75.1 - - - +
1096D ARG* 1.3 59.9 + - - +
1098D LEU* 3.3 5.1 + - - +
1099D VAL* 3.0 33.5 + - - +
1226D ALA 5.2 2.7 - - - +
1227D GLN* 5.4 3.6 - - - +
1230D GLY* 3.3 39.7 - - - +
1231D GLU* 4.3 2.5 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1096 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038C TRP* 4.0 21.4 - - + -
610D LYS* 6.0 3.4 - - - +
615D ARG* 5.4 12.5 - - - +
1092D GLY 3.0 9.3 + - - +
1093D TYR* 3.3 18.8 - - - +
1095D THR* 1.3 81.7 + - - +
1097D LYS* 1.3 58.9 + - + +
1099D VAL* 3.3 8.2 - - - +
1100D ASP* 2.9 52.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1097 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1093D TYR* 2.9 61.9 + - + +
1094D LEU* 3.0 10.9 + - + +
1096D ARG* 1.3 79.1 - - + +
1098D LEU* 1.3 66.2 + - + +
1100D ASP* 3.3 17.1 + - - +
1101D VAL* 3.0 22.9 + - - +
1264D GLU* 5.0 2.4 + - - -
1424D VAL* 5.3 10.8 - - + +
1425D THR* 3.8 29.8 - - - +
1440D PHE* 5.9 6.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1098 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094D LEU* 3.0 39.2 + - + +
1095D THR 3.8 6.3 - - - +
1097D LYS* 1.3 81.2 - - + +
1099D VAL* 1.3 57.5 + - - +
1101D VAL* 2.9 26.2 + - + +
1102D THR* 3.0 19.3 + - + +
1226D ALA* 3.4 37.0 - - + +
1229D ILE* 3.7 32.5 - - + -
1230D GLY* 3.9 7.6 - - - +
1263D PHE* 4.9 24.0 - - + -
1371D VAL* 5.4 7.2 - - + -
1424D VAL* 6.5 0.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1099 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038C TRP* 3.6 55.2 - - + +
1095D THR* 3.0 18.8 + - - +
1096D ARG 3.3 14.1 - - - +
1098D LEU* 1.3 72.7 - - - +
1100D ASP* 1.3 67.1 + - - +
1102D THR* 4.7 2.5 - - - +
1103D HIS* 3.6 21.7 + - - +
1223D ILE* 4.8 14.8 - - + +
1226D ALA* 3.7 25.4 - - + -
1227D GLN* 4.8 8.1 - - + +
1463D LYS* 4.0 4.5 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1100 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038C TRP* 5.2 2.9 - - - -
1096D ARG* 2.9 44.9 + - - +
1097D LYS* 3.3 18.1 - - + +
1099D VAL* 1.3 83.8 - - - +
1101D VAL* 1.3 63.0 + - - +
1102D THR 3.4 0.7 + - - -
1103D HIS* 3.4 19.2 - - - -
1428D ALA* 5.0 8.6 - - + +
1440D PHE* 3.6 27.0 - - + -
1463D LYS* 3.3 27.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1101 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097D LYS 3.0 13.4 + - - +
1098D LEU* 2.9 23.9 + - + +
1100D ASP* 1.3 79.7 - - + +
1102D THR* 1.3 61.8 + - + +
1103D HIS 3.7 0.4 - - - -
1104D GLU* 2.9 6.2 - - - +
1371D VAL* 5.2 10.3 - - + -
1374D GLN* 2.3 54.6 + - - +
1424D VAL* 3.5 46.9 - - + +
1427D SER* 4.8 1.6 - - - -
1428D ALA* 4.4 12.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1102 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1098D LEU* 3.0 17.1 + - + +
1099D VAL* 4.4 3.1 - - - -
1100D ASP 3.3 0.2 - - - -
1101D VAL* 1.3 87.4 - - + +
1103D HIS* 1.3 55.9 + - - +
1104D GLU* 3.1 15.6 + - - -
1105D ILE* 4.0 13.0 + - - +
1222D GLY* 3.3 47.1 - - - +
1223D ILE* 3.7 3.3 + - - +
1225D ALA* 5.7 0.2 - - + -
1226D ALA* 3.8 11.2 - - + -
1370D ILE* 4.4 8.3 - - + +
1371D VAL* 5.3 11.4 - - + -
1374D GLN* 4.5 9.8 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il