Contacts of the helix formed by residues 347 - 390 (chain j) in PDB entry 6QX2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 347 (chain j).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206j ILE* 4.3 7.1 - - - +
234j TYR 3.3 7.6 - - - +
235j GLU 3.2 27.7 + - - +
236j THR 4.3 2.4 + - - +
237j GLY 4.3 5.4 - - - +
335j MET* 3.6 5.4 - - - -
346j ILE* 1.3 76.6 - - - +
348j LEU* 1.3 63.8 + - - +
349j LYS* 2.8 30.8 + - - +
350j GLU* 2.8 39.4 + - - +
351j ALA* 3.3 19.1 + - - +
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Residues in contact with LEU 348 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168j LEU* 3.9 28.9 - - + -
186j HIS* 5.6 1.1 - - - +
191j LEU* 5.3 0.4 - - + -
206j ILE* 4.4 5.2 - - + -
209j LEU* 4.5 16.8 - - + -
210j MET* 4.7 4.7 - - + -
213j ILE* 4.0 32.5 - - + -
234j TYR* 3.1 60.1 + - + +
335j MET* 3.6 10.1 - - + +
347j ASN* 1.3 74.2 - - - +
349j LYS* 1.3 62.2 + - - +
351j ALA* 3.4 4.2 + - - +
352j LEU* 3.2 27.1 + - + +
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Residues in contact with LYS 349 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198j LEU* 4.0 11.4 - - + -
202j PRO 2.9 28.4 + - - -
203j ASP* 3.5 9.1 + - - +
204j ILE* 2.7 38.6 + - + +
205j SER 5.3 0.4 - - - -
206j ILE* 3.6 19.0 - - + +
209j LEU* 4.0 15.3 - - + -
347j ASN* 2.8 15.8 + - - +
348j LEU* 1.3 70.9 - - - +
350j GLU* 1.3 59.5 + - - +
352j LEU* 3.2 3.7 + - - +
353j VAL* 2.8 47.0 + - + +
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Residues in contact with GLU 350 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344j LYS* 5.6 1.4 - - - +
345j LEU 4.1 5.9 - - - +
346j ILE* 3.7 28.9 - - + +
347j ASN* 2.8 49.9 + - - +
349j LYS* 1.3 71.1 - - + +
351j ALA* 1.3 54.6 + - - +
353j VAL* 3.2 6.9 + - - +
354j HIS* 2.8 54.0 + - + +
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Residues in contact with ALA 351 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38j VAL* 4.2 12.3 - - + +
167j LEU* 4.8 5.1 - - + +
168j LEU* 4.1 25.6 - - + -
335j MET* 5.3 1.8 - - + -
346j ILE* 3.7 26.4 - - + +
347j ASN 3.3 7.1 + - - +
348j LEU* 3.5 11.2 - - - +
349j LYS 3.3 0.4 - - - -
350j GLU* 1.3 78.8 - - - +
352j LEU* 1.3 57.8 + - - +
354j HIS* 3.7 2.4 + - - +
355j TYR* 3.2 25.5 + - - +
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Residues in contact with LEU 352 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165j PRO* 5.3 5.8 - - + -
168j LEU* 3.8 20.6 - - + -
191j LEU* 4.6 10.8 - - + +
194j GLY 4.5 8.1 - - - +
195j VAL* 3.7 26.6 - - + +
198j LEU* 3.7 13.9 - - + +
209j LEU* 3.9 29.8 - - + -
213j ILE* 3.9 22.4 - - + -
348j LEU* 3.2 22.2 + - + +
349j LYS* 3.2 6.9 + - - +
351j ALA* 1.3 73.1 - - - +
353j VAL* 1.3 60.5 + - - +
355j TYR* 3.3 6.0 + - + +
356j LEU* 2.9 30.5 + - - +
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Residues in contact with VAL 353 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198j LEU* 3.7 30.7 - - + -
202j PRO 5.6 0.4 - - - +
349j LYS* 2.8 36.9 + - + +
350j GLU* 3.6 7.0 - - - +
352j LEU* 1.3 73.1 - - - +
354j HIS* 1.3 69.5 + - + +
356j LEU* 3.3 3.3 + - - +
357j GLU* 2.9 34.2 + - + +
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Residues in contact with HIS 354 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38j VAL* 3.8 27.1 - - + -
39j ARG* 4.6 5.1 - - + +
339j VAL* 3.4 42.8 - - + +
346j ILE* 5.0 1.8 - - + -
350j GLU* 2.8 46.5 + - + +
351j ALA 4.1 0.2 - - - +
353j VAL* 1.3 79.8 - - + +
355j TYR* 1.3 56.3 + - - +
357j GLU* 3.6 7.8 + - - +
358j HIS* 3.1 26.9 + - - +
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Residues in contact with TYR 355 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38j VAL 5.0 8.0 + - - +
39j ARG* 3.6 21.8 - - - +
162j ALA 2.9 28.5 + - - -
163j ARG 3.0 13.2 + - - -
164j PHE* 3.0 15.2 - - - -
165j PRO* 3.4 44.1 - - + +
195j VAL* 4.2 18.6 - - + -
351j ALA 3.2 15.4 + - - +
352j LEU* 3.5 10.8 - - + +
353j VAL 3.2 0.4 - - - -
354j HIS* 1.3 73.8 - - - +
356j LEU* 1.3 69.0 - - - +
358j HIS* 3.0 9.4 + + - +
359j GLN* 3.0 44.5 + - + +
473j LEU* 4.0 11.9 - - + +
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Residues in contact with LEU 356 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195j VAL* 3.9 22.7 - - + +
198j LEU* 4.1 16.4 - - + +
199j SER* 3.6 40.4 - - - +
352j LEU 2.9 20.3 + - - +
353j VAL* 3.8 4.0 - - - +
355j TYR* 1.3 78.1 - - - +
357j GLU* 1.3 58.1 + - - +
359j GLN* 3.2 6.6 + - + +
360j LYS* 3.0 35.6 + - + +
466j LEU* 4.4 11.2 - - + -
469j VAL* 4.0 23.6 - - + -
473j LEU* 5.0 0.7 - - + -
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Residues in contact with GLU 357 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353j VAL* 2.9 22.4 + - + +
354j HIS* 3.7 9.4 - - - +
356j LEU* 1.3 72.9 - - - +
358j HIS* 1.3 63.0 + - - +
360j LYS* 2.8 39.5 + - - +
361j THR* 3.0 31.1 + - - +
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Residues in contact with HIS 358 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39j ARG* 3.5 55.9 + - + +
143j THR 5.6 0.2 - - - -
144j ILE* 4.3 3.4 - - + -
159j VAL* 4.1 14.4 - - + -
160j LEU 3.0 18.0 + - - -
161j PRO 3.0 27.7 + - - -
162j ALA* 4.4 0.2 - - + -
354j HIS 3.1 13.9 + - - +
355j TYR* 3.0 11.7 + - - +
357j GLU* 1.3 77.8 - - - +
359j GLN* 1.3 68.1 + - - +
361j THR* 3.4 10.6 + - + +
362j VAL* 3.0 42.8 + - + +
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Residues in contact with GLN 359 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161j PRO 3.1 15.2 + - - -
162j ALA 2.7 21.2 + - - -
163j ARG* 3.0 35.1 + - - +
355j TYR* 3.0 49.3 + - + +
356j LEU* 3.2 8.5 + - - +
358j HIS* 1.3 81.4 + - - +
360j LYS* 1.3 56.8 + - - +
362j VAL* 3.1 4.1 + - - +
363j VAL* 2.8 38.3 + - - +
469j VAL* 3.9 23.5 - - + +
473j LEU* 5.1 6.3 - - + +
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Residues in contact with LYS 360 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356j LEU* 3.0 24.1 + - + +
357j GLU* 2.8 41.7 + - - +
359j GLN* 1.3 74.7 - - - +
361j THR* 1.3 57.1 + - - +
363j VAL* 4.0 0.7 - - - +
364j ARG* 2.9 53.8 + - - +
462j GLU* 6.1 2.5 - - - -
465j LEU* 4.2 9.8 - - + +
466j LEU* 3.9 38.1 - - + -
469j VAL* 4.2 12.3 - - + +
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Residues in contact with THR 361 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143j THR 4.8 3.6 - - - +
357j GLU* 3.0 17.4 + - - +
358j HIS* 3.4 15.2 - - + +
360j LYS* 1.3 73.6 - - - +
362j VAL* 1.3 61.0 + - + +
364j ARG* 3.4 17.7 + - - +
365j ARG* 2.9 58.1 + - + +
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Residues in contact with VAL 362 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138j ASP* 4.9 3.6 - - - +
143j THR* 3.5 39.1 - - + +
144j ILE* 4.4 1.6 - - + -
161j PRO* 4.0 17.5 - - + +
163j ARG* 4.1 29.8 - - - +
358j HIS* 3.0 46.6 + - + +
359j GLN* 3.1 7.2 + - - +
361j THR* 1.3 76.5 - - + +
363j VAL* 1.3 59.5 + - - +
365j ARG 3.8 0.2 - - - -
366j ARG* 2.9 28.4 + - + +
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Residues in contact with VAL 363 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163j ARG* 3.6 33.2 - - - +
359j GLN 2.8 21.9 + - - +
360j LYS 4.2 0.2 - - - +
362j VAL* 1.3 68.4 - - + +
364j ARG* 1.3 65.2 - - - +
366j ARG* 3.4 15.0 + - - +
367j THR* 2.9 31.1 + - - +
465j LEU* 3.4 20.0 - - + -
468j LEU* 3.8 29.8 - - + -
469j VAL* 3.9 18.6 - - + -
472j GLU* 4.1 7.4 - - - +
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Residues in contact with ARG 364 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360j LYS* 2.9 35.4 + - - +
361j THR* 3.7 22.9 + - - +
363j VAL* 1.3 75.8 - - - +
365j ARG* 1.3 54.6 + - + +
367j THR* 3.1 7.3 + - - -
368j GLN* 2.8 61.2 + - - +
459j LEU* 4.1 12.5 - - + +
462j GLU* 6.1 4.0 - - - +
465j LEU* 3.6 34.4 - - + +
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Residues in contact with ARG 365 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141j LYS 4.0 0.3 - - - +
142j ASP* 3.0 46.9 + - - +
143j THR* 3.4 21.8 + - - -
144j ILE* 3.6 12.9 + - - +
145j ASP* 2.8 35.3 + - - +
361j THR* 2.9 35.9 + - + +
362j VAL 3.9 3.4 - - - +
364j ARG* 1.3 74.4 - - + +
366j ARG* 1.3 59.5 + - - +
368j GLN* 3.3 18.5 + - - +
369j TYR* 2.9 30.7 + - - +
372j ARG* 5.3 0.5 + - - -
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Residues in contact with ARG 366 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137j ARG* 4.0 4.8 - - - +
138j ASP* 3.3 37.9 + - - -
141j LYS* 3.9 23.6 - - + +
143j THR* 3.7 12.5 - - + +
163j ARG* 3.4 4.8 - - - +
362j VAL* 2.9 20.0 + - - +
363j VAL* 3.6 16.3 + - - +
364j ARG 3.3 0.2 - - - -
365j ARG* 1.3 74.8 - - - +
367j THR* 1.3 55.3 + - - +
369j TYR* 3.2 4.2 + - - +
370j ASN* 2.8 55.2 + - - +
468j LEU* 3.8 21.6 - - - +
472j GLU* 2.9 42.0 + - - -
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Residues in contact with THR 367 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363j VAL* 2.9 19.5 + - - +
364j ARG* 3.1 9.4 + - - -
366j ARG* 1.3 77.7 + - - +
368j GLN* 1.3 58.4 + - - +
370j ASN* 3.3 9.2 + - - +
371j LEU* 2.9 29.9 + - - +
455j LEU* 3.6 40.7 - - + +
458j ILE* 4.0 24.7 - - + +
459j LEU* 3.7 16.8 - - + -
468j LEU* 4.7 2.1 - - - +
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Residues in contact with GLN 368 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364j ARG* 2.8 39.1 + - - +
365j ARG* 3.6 25.4 - - - +
367j THR* 1.3 74.6 - - - +
369j TYR* 1.3 56.6 + - - +
371j LEU* 3.5 4.8 - - - +
372j ARG* 3.0 40.4 + - - +
459j LEU* 3.6 26.4 - - + +
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Residues in contact with TYR 369 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140j ASN 3.9 14.6 + - - -
141j LYS* 3.2 49.4 - - + +
142j ASP* 3.8 13.2 - - + -
365j ARG 2.9 9.0 + - - +
366j ARG 3.4 4.5 - - - +
368j GLN* 1.3 74.1 - - - +
370j ASN* 1.3 71.9 + - - +
372j ARG* 3.3 33.6 + - - +
373j LYS* 3.0 68.7 + - + +
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Residues in contact with ASN 370 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141j LYS* 4.2 14.4 - - - +
366j ARG* 2.8 50.0 + - - +
367j THR* 3.3 7.0 + - - +
369j TYR* 1.3 86.8 - - - +
371j LEU* 1.3 52.7 + - - +
373j LYS* 3.5 4.2 + - - +
374j ALA* 2.9 35.2 + - - +
451j TYR* 3.2 29.4 + - + +
455j LEU* 3.7 10.5 - - + +
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Residues in contact with LEU 371 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367j THR 2.9 18.4 + - - +
368j GLN* 3.5 5.8 - - - +
369j TYR 3.2 0.2 - - - -
370j ASN* 1.3 73.9 - - - +
372j ARG* 1.3 58.5 + - - +
374j ALA* 3.3 2.1 + - - +
375j LYS* 2.9 57.6 + - + +
452j ILE* 3.7 43.3 - - + +
455j LEU* 3.5 17.2 - - + +
456j GLU* 4.0 12.8 - - + +
459j LEU* 3.6 24.9 - - + -
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Residues in contact with ARG 372 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142j ASP* 3.2 25.8 + - - +
365j ARG 5.3 0.2 + - - -
368j GLN* 3.0 44.9 + - - +
369j TYR* 3.4 35.8 - - - +
371j LEU* 1.3 76.1 - - - +
373j LYS* 1.3 74.2 + - - +
375j LYS* 3.7 6.7 - - - +
376j ASP* 3.0 41.6 + - - +
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Residues in contact with LYS 373 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369j TYR* 3.0 59.8 + - + +
370j ASN* 3.9 4.7 - - - +
372j ARG* 1.3 108.6 - - - +
374j ALA* 1.3 58.1 + - - +
376j ASP* 3.5 16.0 + - + +
377j ARG* 3.0 29.7 + - - +
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Residues in contact with ALA 374 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370j ASN 2.9 19.5 + - - +
371j LEU* 3.7 5.6 - - - +
373j LYS* 1.3 76.2 - - - +
375j LYS* 1.3 53.1 + - - +
377j ARG* 3.3 5.0 + - - +
378j ALA* 2.8 34.3 + - - +
448j LEU* 3.5 27.9 - - + +
451j TYR* 4.2 14.6 - - + -
452j ILE* 3.8 15.9 - - + -
455j LEU* 4.7 0.7 - - + -
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Residues in contact with LYS 375 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371j LEU* 2.9 43.4 + - + +
372j ARG* 3.7 6.3 - - - +
374j ALA* 1.3 72.8 - - - +
376j ASP* 1.3 67.6 + - - +
378j ALA* 3.1 3.9 + - - +
379j HIS* 2.9 25.6 + - - +
452j ILE* 4.2 24.0 - - + -
456j GLU* 3.6 24.4 + - - +
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Residues in contact with ASP 376 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372j ARG* 3.0 23.8 + - - +
373j LYS* 3.6 25.4 + - + +
375j LYS* 1.3 76.6 - - - +
377j ARG* 1.3 57.1 + - - +
379j HIS* 3.5 8.9 - - - +
380j ILE* 3.2 31.8 + - + +
420j LYS* 5.6 11.6 - - - +
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Residues in contact with ARG 377 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373j LYS 3.0 18.4 + - - +
374j ALA* 3.5 6.7 - - - +
375j LYS 3.1 0.2 - - - -
376j ASP* 1.3 73.0 - - - +
378j ALA* 1.3 59.6 + - - +
380j ILE* 3.2 26.9 + - - +
381j LEU* 2.9 44.2 + - + +
384j LEU* 5.0 1.8 - - - +
432j ARG* 3.7 20.6 - - - +
444j GLU* 2.9 35.6 + - - +
448j LEU* 3.4 20.4 - - + -
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Residues in contact with ALA 378 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374j ALA 2.8 17.4 + - - +
375j LYS* 3.5 5.6 - - - +
377j ARG* 1.3 74.5 - - - +
379j HIS* 1.3 56.9 + - - +
381j LEU* 3.2 4.0 + - - +
382j GLU* 2.9 39.1 + - - +
445j TYR* 3.6 18.5 - - + -
448j LEU* 3.7 13.8 - - + +
449j LEU* 5.1 3.6 - - + -
452j ILE* 4.0 19.5 - - + -
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Residues in contact with HIS 379 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375j LYS 2.9 12.4 + - - +
376j ASP* 3.5 12.8 - - - +
378j ALA* 1.3 75.8 - - - +
380j ILE* 1.3 64.1 + - + +
382j GLU* 3.3 16.6 + - - +
383j GLY 3.3 4.5 + - - -
418j SER* 2.6 35.1 + - - -
420j LYS* 4.5 17.4 - - + +
421j GLN* 2.8 51.0 + - + -
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Residues in contact with ILE 380 (chain j).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376j ASP 3.2 16.2 + - - +
377j ARG* 3.2 31.6 + - - +
379j HIS* 1.3 77.3 - - + +
381j LEU* 1.3 59.1 + - - +
383j GLY* 3.0 5.2 + - - -
384j LEU* 3.0 33.7 + - + +
420j LYS* 3.4 43.1 - - + +
421j GLN* 4.2 4.9 - - - +
424j ALA* 3.7 24.8 - - + +
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Residues in contact with LEU 381 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377j ARG* 2.9 42.1 + - - +
378j ALA 3.2 8.3 + - - +
380j ILE* 1.3 71.8 - - - +
382j GLU* 1.3 56.3 + - - +
384j LEU* 3.3 13.3 + - + +
385j ARG* 2.9 40.2 + - - +
441j ILE* 4.0 24.1 - - + +
444j GLU* 3.7 26.2 - - + +
445j TYR* 3.7 41.1 - - + +
448j LEU* 3.8 15.9 - - + -
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Residues in contact with GLU 382 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378j ALA* 2.9 21.3 + - - +
379j HIS* 3.4 25.2 + - - +
380j ILE 3.2 0.2 - - - -
381j LEU* 1.3 76.5 - - - +
383j GLY* 1.3 58.8 - - - +
385j ARG* 3.4 17.8 + - - +
386j ILE* 3.2 33.2 + - + +
421j GLN* 3.9 6.9 + - - +
445j TYR* 2.8 35.0 + - + +
449j LEU* 5.4 1.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379j HIS 3.3 4.0 + - - -
380j ILE 3.0 8.1 + - - -
382j GLU* 1.3 75.5 - - - +
384j LEU* 1.3 57.8 + - - +
386j ILE* 3.4 5.3 + - - +
387j ALA 3.0 22.3 + - - -
417j LEU* 4.0 12.3 - - - -
421j GLN* 3.5 25.2 - - - +
425j ILE* 3.5 16.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 384 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377j ARG* 5.0 2.0 - - - +
380j ILE* 3.0 27.2 + - + +
381j LEU* 3.7 20.0 - - + +
383j GLY* 1.3 71.1 - - - +
385j ARG* 1.3 56.7 + - - +
387j ALA* 3.5 4.1 - - - +
388j LEU* 2.8 41.9 + - + +
424j ALA* 4.1 23.3 - - + +
425j ILE* 4.2 7.4 - - + -
428j MET* 3.8 27.8 - - + -
432j ARG* 3.7 36.6 - - - +
441j ILE* 4.2 17.5 - - + -
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Residues in contact with ARG 385 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381j LEU 2.9 25.9 + - - +
382j GLU* 3.5 18.3 + - - +
384j LEU* 1.3 71.1 - - - +
386j ILE* 1.3 55.7 + - + +
388j LEU* 3.2 3.3 + - - +
389j ASP* 2.9 43.4 + - - +
438j ARG* 3.6 31.5 - - - +
441j ILE* 3.9 12.1 - - + -
442j GLU* 3.2 30.1 + - - +
445j TYR* 3.8 50.0 + - - -
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Residues in contact with ILE 386 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382j GLU* 3.2 20.0 + - + +
383j GLY* 3.5 5.6 - - - +
385j ARG* 1.3 75.5 - - + +
387j ALA* 1.3 64.7 + - - +
389j ASP* 3.4 6.3 + - - +
390j HIS* 3.1 44.2 + - + +
394j ILE* 5.0 0.6 - - + +
415j PHE* 4.4 26.7 - - + +
416j LYS 5.5 2.2 - - - +
417j LEU* 4.1 29.6 - - + -
421j GLN* 5.4 2.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 387 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383j GLY 3.0 18.0 + - - +
384j LEU 3.2 4.7 + - - +
386j ILE* 1.3 75.9 - - - +
388j LEU* 1.3 59.4 + - - +
390j HIS 3.4 1.9 - - - -
391j ILE* 3.0 33.7 + - + +
394j ILE* 3.6 17.8 - - + +
425j ILE* 3.6 32.3 - - + -
428j MET* 3.9 14.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 388 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384j LEU 2.8 23.1 + - - +
385j ARG* 3.8 3.6 - - - +
387j ALA* 1.3 70.9 - - - +
389j ASP* 1.3 64.2 + - - +
390j HIS 3.5 0.5 + - - -
391j ILE* 3.6 22.2 + - + +
428j MET* 4.0 24.5 - - + -
432j ARG 3.7 21.5 - - - +
433j LEU* 4.4 14.6 - - + -
438j ARG* 3.6 39.3 - - + -
441j ILE* 3.5 31.6 - - + -
399l ARG* 5.3 1.4 + - - -
----------------------------------------------------------
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Residues in contact with ASP 389 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385j ARG* 2.9 23.9 + - - +
386j ILE* 3.8 6.0 + - - +
387j ALA 3.3 0.2 - - - -
388j LEU* 1.3 76.6 - - - +
390j HIS* 1.3 75.8 + - + +
391j ILE 3.7 0.4 - - - -
438j ARG* 3.1 36.2 + - - +
----------------------------------------------------------
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Residues in contact with HIS 390 (chain j).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386j ILE* 3.1 33.7 + - + +
387j ALA 3.4 4.0 - - - -
389j ASP* 1.3 102.9 - - + +
391j ILE* 1.3 63.7 + - - +
392j ASP 3.3 2.9 - - - -
393j GLU* 3.1 27.9 + - + -
394j ILE* 3.1 19.9 + - + +
415j PHE* 4.1 24.6 - + + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il