Contacts of the helix formed by residues 347 - 390 (chain l) in PDB entry 6QX2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 347 (chain l).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206l ILE* 4.3 6.3 - - - -
234l TYR 3.3 8.3 - - - +
235l GLU 3.2 28.3 + - - +
236l THR 4.3 2.0 - - - +
237l GLY 4.3 5.6 - - - +
335l MET* 3.6 5.6 - - - +
346l ILE* 1.3 75.4 - - - +
348l LEU* 1.3 63.5 + - - +
349l LYS* 2.8 32.1 + - - +
350l GLU* 2.9 40.3 + - - +
351l ALA* 3.3 19.6 + - - +
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Residues in contact with LEU 348 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168l LEU* 3.9 28.7 - - + -
186l HIS* 5.5 1.3 - - - +
191l LEU* 5.3 0.4 - - + -
206l ILE* 4.4 4.7 - - + -
209l LEU* 4.5 16.8 - - + -
210l MET* 4.7 4.9 - - + -
213l ILE* 4.0 33.2 - - + -
234l TYR* 3.1 60.0 + - + +
335l MET* 3.6 10.4 - - + +
347l ASN* 1.3 74.1 - - - +
349l LYS* 1.3 63.5 + - - +
351l ALA* 3.4 3.9 + - - +
352l LEU* 3.2 26.8 + - + +
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Residues in contact with LYS 349 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198l LEU* 4.0 11.7 - - + -
202l PRO 2.9 28.0 + - - -
203l ASP* 3.5 8.7 + - - +
204l ILE* 2.7 37.8 + - + +
205l SER 5.4 0.2 - - - -
206l ILE* 3.6 19.5 - - + +
209l LEU* 3.9 14.1 - - + -
347l ASN* 2.8 15.9 + - - +
348l LEU* 1.3 71.1 - - - +
350l GLU* 1.3 60.2 + - + +
352l LEU* 3.2 4.3 + - - +
353l VAL* 2.8 45.4 + - + +
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Residues in contact with GLU 350 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344l LYS* 3.3 37.5 + - - +
345l LEU 4.1 3.5 - - - +
346l ILE* 3.7 17.9 - - + +
347l ASN* 2.9 50.1 + - - +
349l LYS* 1.3 72.7 - - + +
351l ALA* 1.3 54.3 + - - +
353l VAL* 3.2 6.5 + - - +
354l HIS* 2.8 51.5 + - + +
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Residues in contact with ALA 351 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38l VAL* 4.3 12.3 - - + +
167l LEU* 4.8 5.8 - - + +
168l LEU* 4.1 26.1 - - + +
335l MET* 5.4 1.8 - - + -
346l ILE* 3.7 25.9 - - + +
347l ASN 3.3 7.8 + - - +
348l LEU* 3.5 10.3 - - - +
349l LYS 3.3 0.2 - - - -
350l GLU* 1.3 79.4 - - - +
352l LEU* 1.3 55.4 + - - +
354l HIS* 4.1 2.4 - - - +
355l TYR* 3.2 26.0 + - - +
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Residues in contact with LEU 352 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165l PRO* 5.4 5.4 - - + -
168l LEU* 3.8 20.9 - - + -
191l LEU* 4.6 11.4 - - + +
194l GLY 4.5 7.2 - - - +
195l VAL* 3.7 26.2 - - + +
198l LEU* 3.7 13.8 - - + +
209l LEU* 3.9 30.5 - - + -
213l ILE* 3.8 22.2 - - + -
348l LEU* 3.2 22.2 + - + +
349l LYS* 3.2 6.5 + - - +
351l ALA* 1.3 72.2 - - - +
353l VAL* 1.3 60.4 + - - +
355l TYR* 3.3 5.8 + - + +
356l LEU* 2.9 31.0 + - - +
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Residues in contact with VAL 353 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198l LEU* 3.7 30.3 - - + -
202l PRO 5.6 0.4 - - - +
349l LYS* 2.8 35.6 + - + +
350l GLU* 3.6 6.7 - - - +
352l LEU* 1.3 73.0 - - - +
354l HIS* 1.3 70.4 + - + +
356l LEU* 3.3 3.5 + - - +
357l GLU* 2.9 35.8 + - + +
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Residues in contact with HIS 354 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203J ASP* 6.0 1.8 - - - -
38l VAL* 3.9 28.9 - - + -
39l ARG* 4.6 4.1 - - - +
339l VAL* 3.4 44.7 - - + +
344l LYS* 5.0 3.2 - - - +
346l ILE* 4.9 2.0 - - + -
350l GLU* 2.8 46.6 + - + +
351l ALA 4.1 0.2 - - - +
353l VAL* 1.3 78.5 - - + +
355l TYR* 1.3 57.1 + - - +
357l GLU* 3.6 7.1 + - - +
358l HIS* 3.1 27.0 + - - +
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Residues in contact with TYR 355 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38l VAL 4.9 7.4 + - - +
39l ARG* 3.5 20.9 - - - +
162l ALA 2.9 28.4 + - - -
163l ARG 3.1 13.3 + - - -
164l PHE* 2.9 15.2 - - - -
165l PRO* 3.4 45.0 - - + +
195l VAL* 4.2 17.9 - - + -
351l ALA 3.2 16.4 + - - +
352l LEU* 3.5 9.6 - - + +
353l VAL 3.2 0.8 - - - -
354l HIS* 1.3 74.5 - - - +
356l LEU* 1.3 69.6 + - - +
358l HIS* 3.0 9.5 + + - +
359l GLN* 3.0 45.0 + - + +
473l LEU* 4.1 11.1 - - + +
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Residues in contact with LEU 356 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195l VAL* 3.9 22.9 - - + +
198l LEU* 4.1 15.9 - - + +
199l SER* 3.7 39.7 - - - +
352l LEU 2.9 21.4 + - - +
353l VAL* 3.8 3.6 - - - +
355l TYR* 1.3 77.5 - - - +
357l GLU* 1.3 60.1 + - - +
359l GLN* 3.2 7.4 + - + +
360l LYS* 3.0 34.3 + - + +
466l LEU* 4.5 11.0 - - + -
469l VAL* 4.0 23.8 - - + -
473l LEU* 5.0 0.4 - - + -
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Residues in contact with GLU 357 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353l VAL* 2.9 24.4 + - + +
354l HIS* 3.7 9.0 - - - +
356l LEU* 1.3 75.1 - - - +
358l HIS* 1.3 63.8 + - - +
360l LYS* 3.4 27.8 + - - +
361l THR* 3.0 29.8 + - - +
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Residues in contact with HIS 358 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39l ARG* 3.5 56.2 + - + +
143l THR 5.6 0.2 - - - -
144l ILE* 4.3 3.8 - - + -
159l VAL* 4.1 13.9 - - + -
160l LEU 3.0 18.7 + - - -
161l PRO 3.0 27.6 + - - -
162l ALA* 4.4 0.4 - - + -
354l HIS 3.1 13.7 + - - +
355l TYR* 3.0 11.3 + + - +
357l GLU* 1.3 75.5 - - - +
359l GLN* 1.3 66.9 + - - +
361l THR* 3.4 11.3 + - + +
362l VAL* 3.0 42.7 + - + +
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Residues in contact with GLN 359 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161l PRO 3.1 14.8 + - - -
162l ALA 2.7 21.4 + - - -
163l ARG* 3.0 35.0 + - - +
355l TYR* 3.0 49.8 + - + +
356l LEU* 3.2 9.4 + - - +
358l HIS* 1.3 82.2 + - - +
360l LYS* 1.3 56.2 + - - +
362l VAL* 3.2 3.8 + - - +
363l VAL* 2.8 39.3 + - + +
469l VAL* 4.0 23.0 - - + +
473l LEU* 5.1 5.6 - - + +
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Residues in contact with LYS 360 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356l LEU* 3.0 21.2 + - + +
357l GLU* 3.4 30.7 - - - +
359l GLN* 1.3 74.3 - - - +
361l THR* 1.3 56.9 + - - +
363l VAL* 3.9 0.9 - - - +
364l ARG* 2.9 38.2 + - - +
465l LEU* 4.2 19.8 - - + +
466l LEU* 3.9 31.4 - - + -
469l VAL* 4.2 10.3 - - + -
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Residues in contact with THR 361 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143l THR 4.9 3.4 - - - +
357l GLU* 3.0 17.8 + - - +
358l HIS* 3.4 14.0 - - + +
360l LYS* 1.3 73.7 - - - +
362l VAL* 1.3 61.8 + - + +
364l ARG* 3.4 7.1 + - - +
365l ARG* 2.9 58.5 + - + +
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Residues in contact with VAL 362 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138l ASP* 4.9 3.4 - - - +
143l THR* 3.5 38.4 - - + +
144l ILE* 4.4 0.9 - - + -
161l PRO* 3.9 18.4 - - + +
163l ARG* 4.1 29.2 - - - +
358l HIS* 3.0 47.6 + - + +
359l GLN* 3.2 6.3 + - - +
361l THR* 1.3 75.7 - - + +
363l VAL* 1.3 59.6 + - - +
365l ARG* 3.5 0.6 + - - -
366l ARG* 2.9 28.7 + - + +
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Residues in contact with VAL 363 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163l ARG* 3.6 34.5 - - - +
359l GLN 2.8 21.1 + - - +
360l LYS 4.2 0.9 - - - +
362l VAL* 1.3 69.6 - - - +
364l ARG* 1.3 66.2 + - - +
366l ARG* 3.4 14.3 + - - +
367l THR* 2.9 32.3 + - - +
458l ILE* 5.3 0.2 - - + -
465l LEU* 4.6 11.2 - - + -
468l LEU* 3.8 33.9 - - + -
469l VAL* 3.9 22.2 - - + -
472l GLU* 4.1 6.5 - - - +
----------------------------------------------------------
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Residues in contact with ARG 364 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360l LYS* 2.9 25.0 + - - +
361l THR* 3.7 6.4 - - - +
363l VAL* 1.3 74.7 - - - +
365l ARG* 1.3 53.7 + - + +
367l THR* 3.1 7.3 + - - -
368l GLN* 2.8 61.7 + - - +
458l ILE 5.2 0.4 + - - -
459l LEU* 4.1 25.8 + - + +
462l GLU* 3.7 29.9 + - - +
465l LEU* 3.5 41.8 - - + +
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Residues in contact with ARG 365 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141l LYS 4.0 0.3 - - - +
142l ASP* 3.0 47.4 + - - +
143l THR* 3.4 21.0 + - - -
144l ILE* 3.6 13.3 - - - +
145l ASP* 2.8 35.0 + - - +
361l THR* 2.9 36.1 + - + +
362l VAL 3.9 2.9 - - - +
364l ARG* 1.3 73.0 - - + +
366l ARG* 1.3 60.3 + - - +
368l GLN* 3.3 18.2 + - - +
369l TYR* 2.9 30.8 + - - +
372l ARG* 4.6 2.0 + - - +
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Residues in contact with ARG 366 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138l ASP* 3.4 38.6 + - - -
141l LYS* 3.9 31.6 - - + +
143l THR* 3.6 7.7 - - + +
163l ARG* 3.4 4.6 - - - +
362l VAL* 2.9 20.4 + - - +
363l VAL* 3.6 15.5 + - - +
364l ARG 3.3 0.2 - - - -
365l ARG* 1.3 74.5 - - - +
367l THR* 1.3 54.5 + - - +
369l TYR* 3.2 3.8 + - - +
370l ASN* 2.8 55.4 + - - +
468l LEU* 3.8 21.2 - - - +
472l GLU* 2.9 41.7 + - - -
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Residues in contact with THR 367 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363l VAL* 2.9 20.0 + - - +
364l ARG* 3.4 9.6 - - - -
366l ARG* 1.3 76.9 + - - +
368l GLN* 1.3 59.0 + - - +
370l ASN* 3.3 9.6 + - - +
371l LEU* 2.9 30.7 + - - +
455l LEU* 3.6 39.8 - - + +
458l ILE* 3.9 25.0 - - + +
459l LEU* 3.7 17.0 - - + -
468l LEU* 4.6 2.4 - - - +
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Residues in contact with GLN 368 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364l ARG* 2.8 37.0 + - - +
365l ARG* 3.6 25.0 - - - +
367l THR* 1.3 74.0 - - - +
369l TYR* 1.3 56.5 + - - +
371l LEU* 3.5 5.4 + - - +
372l ARG* 3.0 44.9 + - - +
459l LEU* 3.6 25.9 - - + +
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Residues in contact with TYR 369 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140l ASN 3.9 15.1 + - - -
141l LYS* 3.2 56.0 - - + +
142l ASP* 3.9 5.8 - - + -
365l ARG 2.9 10.1 + - - +
366l ARG 3.4 4.7 - - - +
368l GLN* 1.3 73.7 - - - +
370l ASN* 1.3 70.3 + - - +
372l ARG* 3.3 34.5 + - + +
373l LYS* 3.0 41.6 + - + +
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Residues in contact with ASN 370 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141l LYS* 3.9 19.2 + - - +
366l ARG* 2.8 49.9 + - - +
367l THR* 3.3 7.0 + - - +
369l TYR* 1.3 85.1 - - - +
371l LEU* 1.3 51.5 - - - +
373l LYS* 3.5 4.6 + - - +
374l ALA* 2.9 35.5 + - - +
451l TYR* 3.2 29.3 + - + +
455l LEU* 3.8 12.0 - - + +
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Residues in contact with LEU 371 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367l THR 2.9 17.3 + - - +
368l GLN* 3.5 6.1 - - - +
370l ASN* 1.3 73.4 - - - +
372l ARG* 1.3 56.7 + - - +
374l ALA* 3.3 2.2 + - - +
375l LYS* 2.9 40.7 + - + +
452l ILE* 3.7 41.7 - - + +
455l LEU* 3.5 20.0 - - + +
456l GLU* 4.0 17.3 - - + +
459l LEU* 3.6 24.9 - - + -
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Residues in contact with ARG 372 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142l ASP* 3.2 28.0 + - - +
365l ARG 4.6 1.4 + - - -
368l GLN* 3.0 24.2 + - - +
369l TYR* 3.4 53.8 - - + +
371l LEU* 1.3 76.3 - - - +
373l LYS* 1.3 57.0 + - - +
375l LYS* 3.7 4.4 - - - +
376l ASP* 3.0 38.6 + - - +
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Residues in contact with LYS 373 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369l TYR* 3.0 33.1 + - + +
370l ASN* 3.9 6.3 - - - +
372l ARG* 1.3 74.1 - - - +
374l ALA* 1.3 56.3 + - - +
376l ASP* 3.5 9.8 + - - +
377l ARG* 3.0 29.7 + - - +
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Residues in contact with ALA 374 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370l ASN 2.9 19.6 + - - +
371l LEU* 3.7 4.9 - - - +
373l LYS* 1.3 76.8 - - - +
375l LYS* 1.3 51.0 - - - +
377l ARG* 3.3 2.7 + - - -
378l ALA* 2.8 34.8 + - - +
448l LEU* 3.4 31.1 - - + +
451l TYR* 4.2 13.5 - - + -
452l ILE* 3.8 16.6 - - + -
455l LEU* 4.6 0.9 - - + -
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Residues in contact with LYS 375 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371l LEU* 2.9 21.7 + - + +
372l ARG* 3.7 5.2 - - - +
374l ALA* 1.3 72.9 - - - +
376l ASP* 1.3 67.7 + - - +
378l ALA* 3.1 4.0 + - - +
379l HIS* 2.9 25.1 + - - +
452l ILE* 4.2 15.6 - - + +
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Residues in contact with ASP 376 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372l ARG* 3.0 21.7 + - - +
373l LYS* 3.6 12.7 - - - +
375l LYS* 1.3 77.3 - - - +
377l ARG* 1.3 56.0 + - - +
379l HIS* 3.5 8.5 - - - +
380l ILE* 3.2 31.9 + - - +
420l LYS* 5.8 6.2 - - - +
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Residues in contact with ARG 377 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373l LYS 3.0 17.5 + - - +
374l ALA* 3.5 6.5 - - - +
375l LYS 3.1 0.2 - - - -
376l ASP* 1.3 73.4 - - - +
378l ALA* 1.3 59.9 + - - +
380l ILE* 3.2 26.7 + - - +
381l LEU* 2.9 43.6 + - + +
384l LEU* 4.7 7.3 - - - +
441l ILE* 6.0 1.0 - - - +
444l GLU* 2.8 37.6 + - - +
448l LEU* 3.6 17.9 - - + -
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Residues in contact with ALA 378 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374l ALA 2.8 20.4 + - - +
375l LYS* 3.1 5.6 + - - +
377l ARG* 1.3 72.2 - - - +
379l HIS* 1.3 56.5 + - - +
381l LEU* 3.2 5.2 + - - +
382l GLU* 2.9 39.1 + - - +
445l TYR* 3.6 16.6 - - + -
448l LEU* 3.4 17.2 - - + +
449l LEU* 5.3 3.1 - - + -
452l ILE* 3.9 17.9 - - + -
----------------------------------------------------------
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Residues in contact with HIS 379 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375l LYS 2.9 13.4 + - - +
376l ASP* 3.5 12.1 - - - +
378l ALA* 1.3 75.2 - - - +
380l ILE* 1.3 65.5 - - + +
382l GLU* 3.3 16.8 + - - +
383l GLY 3.3 4.3 + - - -
418l SER* 2.6 35.1 + - - -
420l LYS* 4.5 16.9 - - + +
421l GLN* 2.8 52.2 + - + -
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Residues in contact with ILE 380 (chain l).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376l ASP 3.2 15.4 + - - +
377l ARG* 3.2 31.4 + - - +
379l HIS* 1.3 78.7 - - + +
381l LEU* 1.3 58.0 + - - +
383l GLY* 3.0 5.5 + - - -
384l LEU* 3.0 33.6 + - + +
420l LYS* 3.4 42.8 - - + +
421l GLN* 4.2 4.6 - - - +
424l ALA* 3.7 23.9 - - + +
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Residues in contact with LEU 381 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377l ARG* 2.9 42.1 + - - +
378l ALA 3.5 7.6 - - - +
380l ILE* 1.3 72.0 - - - +
382l GLU* 1.3 56.6 + - - +
384l LEU* 3.3 14.9 + - + +
385l ARG* 2.9 39.4 + - - +
441l ILE* 4.0 24.0 - - + +
444l GLU* 3.7 27.4 - - + +
445l TYR* 3.7 40.2 - - + +
448l LEU* 4.1 14.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU 382 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378l ALA* 2.9 22.4 + - - +
379l HIS* 3.4 25.1 + - - +
380l ILE 3.2 0.2 - - - -
381l LEU* 1.3 74.2 - - - +
383l GLY* 1.3 61.2 + - - +
385l ARG* 3.4 17.9 + - - +
386l ILE* 3.2 33.5 + - + +
421l GLN* 3.9 6.5 + - - +
445l TYR* 2.8 36.1 + - + +
449l LEU* 5.4 1.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379l HIS 3.3 4.0 + - - -
380l ILE 3.0 8.4 + - - -
382l GLU* 1.3 75.5 - - - +
384l LEU* 1.3 58.6 + - - +
386l ILE* 3.4 4.4 + - - +
387l ALA 3.0 23.4 + - - -
417l LEU* 4.0 11.9 - - - -
421l GLN* 3.5 25.9 - - - +
425l ILE* 3.5 15.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 384 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377l ARG* 4.7 8.1 - - - +
380l ILE* 3.0 28.7 + - + +
381l LEU* 3.3 24.4 + - + +
383l GLY* 1.3 71.2 - - - +
385l ARG* 1.3 56.2 + - - +
387l ALA* 3.2 5.0 + - - +
388l LEU* 2.8 35.7 + - - +
424l ALA* 4.1 24.7 - - + +
425l ILE* 4.2 11.4 - - + -
428l MET* 3.9 27.3 - - + +
441l ILE* 4.2 25.0 - - + +
----------------------------------------------------------
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Residues in contact with ARG 385 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381l LEU 2.9 21.1 + - - +
382l GLU* 3.5 18.2 + - - +
383l GLY 3.3 0.2 - - - -
384l LEU* 1.3 72.9 - - - +
386l ILE* 1.3 55.4 + - + +
388l LEU* 3.2 2.9 + - - +
389l ASP* 2.9 43.9 + - - +
438l ARG* 3.7 29.5 - - - +
441l ILE* 3.9 12.3 - - + -
442l GLU* 2.5 35.3 + - - -
445l TYR* 3.8 46.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE 386 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382l GLU* 3.2 20.1 + - + +
383l GLY 3.5 6.3 - - - +
385l ARG* 1.3 76.1 - - + +
387l ALA* 1.3 62.7 + - - +
389l ASP* 3.4 4.3 + - - -
390l HIS* 2.9 48.4 + - + +
394l ILE* 4.9 0.6 - - + +
415l PHE* 4.3 28.5 - - + +
416l LYS 5.8 1.3 - - - +
417l LEU* 4.1 28.9 - - + -
421l GLN* 5.5 2.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 387 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383l GLY 3.0 14.5 + - - +
384l LEU 3.2 8.2 + - - +
386l ILE* 1.3 75.8 - - - +
388l LEU* 1.3 58.2 + - - +
390l HIS 3.4 2.3 - - - -
391l ILE* 3.0 34.2 + - - +
394l ILE* 3.6 19.1 - - + +
425l ILE* 3.6 31.6 - - + -
428l MET* 3.9 15.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 388 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399j ARG* 5.0 2.8 + - - -
384l LEU 2.8 20.2 + - - +
385l ARG 3.8 1.3 - - - +
387l ALA* 1.3 73.5 - - - +
389l ASP* 1.3 62.8 + - - +
390l HIS 3.5 0.5 + - - -
391l ILE* 3.6 24.8 + - - +
428l MET* 5.2 5.1 - - - +
432l ARG 5.8 3.1 - - - +
433l LEU* 5.5 7.9 - - + -
438l ARG* 3.8 30.5 - - + -
441l ILE* 5.8 4.9 - - + -
----------------------------------------------------------
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Residues in contact with ASP 389 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385l ARG* 2.9 27.5 + - - +
386l ILE* 3.8 5.4 + - - +
387l ALA 3.3 0.2 - - - -
388l LEU* 1.3 76.9 - - - +
390l HIS* 1.3 75.6 + - + +
391l ILE* 3.7 0.7 - - - -
438l ARG* 3.1 35.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 390 (chain l).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386l ILE* 2.9 44.3 + - + +
387l ALA 3.4 3.8 - - - -
388l LEU 3.3 0.2 - - - -
389l ASP* 1.3 91.6 + - + +
391l ILE* 1.3 62.9 + - - +
392l ASP* 3.3 3.1 - - - -
393l GLU* 3.1 28.8 + - - +
394l ILE* 3.1 19.2 + - + +
415l PHE* 4.1 20.0 - + + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il