Contacts of the helix formed by residues 347 - 390 (chain t) in PDB entry 6QX2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 347 (chain t).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206t ILE* 4.2 6.3 - - - +
234t TYR 3.3 8.3 - - - +
235t GLU 3.3 28.3 + - - +
236t THR 4.3 2.2 - - - +
237t GLY 4.3 5.1 - - - +
335t MET* 3.6 5.6 - - - -
346t ILE* 1.3 76.4 - - - +
348t LEU* 1.3 64.9 + - - +
349t LYS* 2.8 32.4 + - - +
350t GLU* 2.9 39.1 + - - +
351t ALA* 3.3 18.4 + - - +
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Residues in contact with LEU 348 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168t LEU* 3.8 28.7 - - + -
186t HIS* 5.5 0.7 - - - +
191t LEU* 5.3 0.2 - - + -
206t ILE* 4.4 5.4 - - + -
209t LEU* 4.5 16.2 - - + -
210t MET* 4.6 5.4 - - + -
213t ILE* 4.0 33.9 - - + -
234t TYR* 3.1 58.7 + - + +
335t MET* 3.6 10.2 - - - +
347t ASN* 1.3 75.7 - - - +
349t LYS* 1.3 62.8 + - - +
351t ALA* 3.4 4.3 + - - +
352t LEU* 3.2 25.8 + - + +
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Residues in contact with LYS 349 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198t LEU* 4.0 12.8 - - + -
202t PRO 2.9 27.9 + - - -
203t ASP* 3.5 8.9 + - - +
204t ILE* 2.7 37.0 + - + +
205t SER 5.3 0.9 - - - -
206t ILE* 3.6 18.6 - - + +
209t LEU* 3.9 15.9 - - + -
347t ASN* 2.8 16.4 + - - +
348t LEU* 1.3 70.9 - - - +
350t GLU* 1.3 60.1 + - + +
352t LEU* 3.2 4.2 + - - +
353t VAL* 2.8 45.2 + - + +
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Residues in contact with GLU 350 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344t LYS* 2.5 40.0 + - - +
345t LEU 4.1 4.7 - - - +
346t ILE* 3.7 20.6 - - + +
347t ASN* 2.9 50.4 + - - +
349t LYS* 1.3 71.8 - - + +
351t ALA* 1.3 53.3 + - - +
353t VAL* 3.2 6.8 + - - +
354t HIS* 2.8 49.8 + - + +
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Residues in contact with ALA 351 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38t VAL* 4.2 10.3 - - - +
167t LEU* 4.7 7.1 - - + +
168t LEU* 4.1 26.7 - - + -
335t MET* 5.4 2.2 - - + -
346t ILE* 3.7 26.6 - - + +
347t ASN 3.3 7.1 + - - +
348t LEU* 3.5 9.9 - - - +
349t LYS 3.3 0.2 - - - -
350t GLU* 1.3 79.2 - - - +
352t LEU* 1.3 56.3 + - - +
354t HIS* 3.7 2.6 + - - +
355t TYR* 3.2 26.2 + - - +
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Residues in contact with LEU 352 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165t PRO* 5.3 6.5 - - + -
168t LEU* 3.8 21.1 - - + -
191t LEU* 4.6 12.1 - - + +
194t GLY 4.5 7.6 - - - -
195t VAL* 3.7 24.8 - - + +
198t LEU* 3.7 14.6 - - + +
209t LEU* 3.9 30.3 - - + -
213t ILE* 3.8 22.7 - - + -
348t LEU* 3.2 22.6 + - + +
349t LYS* 3.7 6.7 - - - +
351t ALA* 1.3 72.8 - - - +
353t VAL* 1.3 61.0 + - - +
355t TYR* 3.3 6.8 + - + +
356t LEU* 2.9 30.5 + - - +
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Residues in contact with VAL 353 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198t LEU* 3.7 30.7 - - + -
202t PRO 5.6 0.4 - - - +
349t LYS* 2.8 36.3 + - + +
350t GLU* 3.6 6.7 - - - +
352t LEU* 1.3 72.9 - - - +
354t HIS* 1.3 70.3 + - + +
356t LEU* 3.3 4.1 + - - +
357t GLU* 2.9 37.5 + - + +
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Residues in contact with HIS 354 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38t VAL* 3.8 28.3 - - + -
39t ARG* 4.6 4.2 - - + +
339t VAL* 3.4 42.4 - - + +
344t LYS* 3.5 16.9 + - - -
346t ILE* 5.0 1.1 - - + -
350t GLU* 2.8 37.2 + - + +
351t ALA 4.1 0.2 - - - +
353t VAL* 1.3 79.3 - - + +
355t TYR* 1.3 56.5 + - - +
357t GLU* 3.6 8.1 + - - +
358t HIS* 3.1 26.9 + - - +
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Residues in contact with TYR 355 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38t VAL 4.9 7.6 + - - +
39t ARG* 3.5 21.8 - - - +
162t ALA 2.9 30.4 + - - -
163t ARG 3.0 13.5 + - - -
164t PHE* 3.0 15.0 - - - -
165t PRO* 3.4 45.0 - - + +
195t VAL* 4.2 18.4 - - + -
351t ALA 3.2 18.6 + - - +
352t LEU* 3.5 7.0 - - + +
353t VAL 3.2 0.4 - - - -
354t HIS* 1.3 73.8 - - - +
356t LEU* 1.3 70.0 + - - +
358t HIS* 3.0 9.9 + + - +
359t GLN* 3.0 43.3 + - + +
473t LEU* 4.1 11.2 - - + +
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Residues in contact with LEU 356 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195t VAL* 3.9 22.2 - - + +
198t LEU* 4.1 16.8 - - + +
199t SER* 3.7 40.8 - - - +
352t LEU 2.9 20.8 + - - +
353t VAL* 3.8 4.0 - - - +
355t TYR* 1.3 78.4 - - - +
357t GLU* 1.3 59.3 + - - +
359t GLN* 3.2 6.2 + - + +
360t LYS* 3.0 42.9 + - + +
466t LEU* 4.6 4.0 - - + -
469t VAL* 4.2 22.0 - - + -
473t LEU* 5.0 0.9 - - + -
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Residues in contact with GLU 357 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353t VAL* 2.9 23.5 + - + +
354t HIS* 3.7 9.4 - - - +
356t LEU* 1.3 75.2 - - - +
358t HIS* 1.3 63.0 - - - +
360t LYS* 3.4 26.4 + - - +
361t THR* 3.0 29.5 + - - +
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Residues in contact with HIS 358 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39t ARG* 3.5 58.3 + - + +
144t ILE* 4.3 4.5 - - + -
159t VAL* 4.1 13.2 - - + -
160t LEU 3.0 18.5 + - - -
161t PRO 3.0 27.9 + - - -
162t ALA* 4.4 0.2 - - + -
354t HIS 3.1 13.5 + - - +
355t TYR* 3.0 11.7 + + - +
357t GLU* 1.3 76.1 - - - +
359t GLN* 1.3 67.6 + - - +
361t THR* 3.4 10.4 + - + +
362t VAL* 3.0 41.8 + - + +
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Residues in contact with GLN 359 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161t PRO 3.1 14.8 + - - -
162t ALA 2.7 21.6 + - - -
163t ARG* 3.0 34.8 + - - +
355t TYR* 3.0 48.8 + - + +
356t LEU* 3.2 9.4 + - - +
358t HIS* 1.3 81.4 + - - +
360t LYS* 1.3 55.9 + - - +
362t VAL* 3.2 4.2 + - - +
363t VAL* 2.8 38.9 + - + +
469t VAL* 4.0 24.4 - - + +
473t LEU* 5.0 6.0 - - + +
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Residues in contact with LYS 360 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356t LEU* 3.0 25.5 + - + +
357t GLU* 3.4 31.6 + - - +
359t GLN* 1.3 74.0 - - - +
361t THR* 1.3 57.5 + - - +
363t VAL* 3.5 1.4 + - - +
364t ARG* 2.9 33.7 + - - +
465t LEU* 4.3 16.7 - - + +
466t LEU* 3.9 29.2 - - + -
469t VAL* 4.3 10.9 - - + +
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Residues in contact with THR 361 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143t THR 4.9 3.6 - - - +
357t GLU* 3.0 17.6 + - - +
358t HIS* 3.4 14.2 - - - +
360t LYS* 1.3 72.9 - - - +
362t VAL* 1.3 62.5 - - + +
364t ARG* 3.4 26.3 + - - +
365t ARG* 2.9 53.6 + - - +
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Residues in contact with VAL 362 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138t ASP* 5.0 3.1 - - - +
143t THR* 3.5 38.6 - - + +
144t ILE* 4.4 1.3 - - + -
161t PRO* 4.0 17.0 - - + +
163t ARG* 4.1 29.8 - - - +
358t HIS* 3.0 47.0 + - + +
359t GLN* 3.2 6.9 + - - +
361t THR* 1.3 75.7 - - - +
363t VAL* 1.3 60.6 + - + +
365t ARG* 3.5 0.6 + - - -
366t ARG* 2.9 28.9 + - + +
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Residues in contact with VAL 363 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163t ARG* 3.6 34.5 - - - +
359t GLN 2.8 22.3 + - - +
360t LYS 4.2 1.1 - - - +
362t VAL* 1.3 68.6 - - + +
364t ARG* 1.3 65.4 + - - +
366t ARG* 3.6 13.8 - - - +
367t THR* 2.9 32.1 + - - +
458t ILE* 5.4 0.2 - - + -
465t LEU* 4.6 10.5 - - + -
468t LEU* 3.8 33.9 - - + -
469t VAL* 3.9 22.4 - - + -
472t GLU* 4.1 5.8 - - - +
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Residues in contact with ARG 364 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360t LYS 2.9 18.4 + - - +
361t THR* 3.7 32.9 + - - +
363t VAL* 1.3 75.6 - - - +
365t ARG* 1.3 63.9 + - - +
367t THR* 3.0 8.0 + - - -
368t GLN* 2.8 77.3 + - - +
459t LEU* 4.3 7.2 - - + -
465t LEU* 3.7 25.0 - - + +
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Residues in contact with ARG 365 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141t LYS 4.0 0.2 - - - +
142t ASP* 3.0 47.2 + - - +
143t THR* 3.4 21.0 + - - -
144t ILE* 3.6 13.1 + - - +
145t ASP* 2.7 33.9 + - - +
361t THR* 2.9 35.9 + - - +
362t VAL 3.9 3.6 - - - +
364t ARG* 1.3 90.7 - - - +
366t ARG* 1.3 60.6 + - - +
368t GLN* 3.3 12.7 + - - +
369t TYR* 2.9 30.7 + - - +
372t ARG* 4.6 2.1 + - - +
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Residues in contact with ARG 366 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138t ASP* 3.4 37.9 + - - -
141t LYS* 3.9 31.2 - - + +
143t THR* 3.6 6.9 - - + +
163t ARG* 3.4 5.3 - - - +
362t VAL* 2.9 19.7 + - - +
363t VAL* 3.6 15.6 + - - +
364t ARG 3.3 0.2 - - - -
365t ARG* 1.3 74.7 - - - +
367t THR* 1.3 56.1 + - - +
369t TYR* 3.2 3.8 + - - +
370t ASN* 2.8 55.7 + - - +
468t LEU* 3.8 21.4 - - - +
472t GLU* 2.9 41.9 + - - -
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Residues in contact with THR 367 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363t VAL* 2.9 19.0 + - - +
364t ARG* 3.4 9.4 - - - -
366t ARG* 1.3 78.0 + - - +
368t GLN* 1.3 58.3 + - - +
370t ASN* 3.3 9.7 + - - +
371t LEU* 2.9 30.2 + - - +
455t LEU* 3.6 39.6 - - + +
458t ILE* 4.0 22.0 - - + +
459t LEU* 3.7 17.9 - - + -
468t LEU* 4.6 4.7 - - - +
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Residues in contact with GLN 368 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364t ARG* 2.8 56.3 + - - +
365t ARG* 3.6 15.2 - - - +
367t THR* 1.3 74.8 - - - +
369t TYR* 1.3 57.5 + - - +
371t LEU* 3.5 4.4 + - - +
372t ARG* 3.0 44.4 + - - +
459t LEU* 3.6 25.1 - - + +
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Residues in contact with TYR 369 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140t ASN 3.8 14.2 + - - -
141t LYS* 3.2 57.4 - - + +
142t ASP* 3.9 5.6 - - + -
365t ARG 2.9 10.3 + - - +
366t ARG 3.4 4.9 - - - +
368t GLN* 1.3 74.3 - - - +
370t ASN* 1.3 70.7 + - - +
372t ARG* 3.3 34.4 + - + +
373t LYS* 2.9 42.1 + - + +
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Residues in contact with ASN 370 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141t LYS* 3.9 19.9 + - - +
366t ARG* 2.8 50.6 + - - +
367t THR* 3.3 7.2 + - - +
369t TYR* 1.3 85.5 - - - +
371t LEU* 1.3 52.8 + - - +
373t LYS* 3.5 4.8 + - - +
374t ALA* 2.9 35.5 + - - +
451t TYR* 3.2 29.8 + - + +
455t LEU* 3.8 10.6 - - + +
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Residues in contact with LEU 371 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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367t THR 2.9 17.7 + - - +
368t GLN* 3.5 6.5 - - - +
370t ASN* 1.3 72.9 - - - +
372t ARG* 1.3 59.6 + - - +
374t ALA* 3.3 2.6 + - - +
375t LYS* 2.9 35.8 + - + +
452t ILE* 3.7 42.0 - - + +
455t LEU* 3.5 19.6 - - + +
456t GLU* 4.0 17.3 - - + +
459t LEU* 3.7 24.0 - - + -
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Residues in contact with ARG 372 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142t ASP* 3.2 28.5 + - - +
365t ARG 4.6 1.0 + - - -
368t GLN* 3.0 25.4 + - - +
369t TYR* 3.4 53.5 - - + +
371t LEU* 1.3 76.2 - - - +
373t LYS* 1.3 55.6 - - - +
375t LYS* 3.4 4.2 + - - +
376t ASP* 3.0 37.8 + - - +
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Residues in contact with LYS 373 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369t TYR* 2.9 36.2 + - + +
370t ASN* 3.9 4.9 - - - +
372t ARG* 1.3 74.1 - - - +
374t ALA* 1.3 57.5 + - - +
376t ASP* 3.5 8.7 + - - +
377t ARG* 3.0 29.5 + - - +
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Residues in contact with ALA 374 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370t ASN 2.9 19.1 + - - +
371t LEU* 3.3 5.4 + - - +
373t LYS* 1.3 76.1 - - - +
375t LYS* 1.3 51.6 + - - +
377t ARG* 3.3 2.8 + - - -
378t ALA* 2.8 35.0 + - - +
448t LEU* 3.4 29.4 - - + +
451t TYR* 4.2 13.9 - - + -
452t ILE* 3.8 17.3 - - + -
455t LEU* 4.6 0.7 - - + -
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Residues in contact with LYS 375 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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371t LEU* 2.9 21.1 + - + +
372t ARG* 3.7 4.7 - - - +
374t ALA* 1.3 73.4 - - - +
376t ASP* 1.3 67.7 + - - +
378t ALA* 3.1 8.9 + - - +
379t HIS* 2.9 25.4 + - - +
452t ILE* 4.2 11.8 - - + +
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Residues in contact with ASP 376 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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372t ARG* 3.0 21.6 + - - +
373t LYS* 3.6 11.4 - - - +
375t LYS* 1.3 77.2 - - - +
377t ARG* 1.3 56.9 + - - +
379t HIS* 3.5 9.1 - - - +
380t ILE* 3.2 31.1 + - + +
420t LYS* 5.9 8.1 - - + +
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Residues in contact with ARG 377 (chain t).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373t LYS 3.0 17.3 + - - +
374t ALA* 3.5 7.6 - - - +
375t LYS 3.1 0.4 - - - -
376t ASP* 1.3 72.5 - - - +
378t ALA* 1.3 59.8 + - - +
380t ILE* 3.2 26.4 + - - +
381t LEU* 2.9 45.4 + - + +
384t LEU* 5.0 6.7 - - - +
441t ILE* 6.2 0.6 - - - +
444t GLU* 2.8 38.0 + - - +
448t LEU* 3.6 17.5 - - + -
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Residues in contact with ALA 378 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374t ALA 2.8 20.9 + - - +
375t LYS* 3.5 5.2 - - - +
377t ARG* 1.3 72.0 - - - +
379t HIS* 1.3 56.4 + - - +
381t LEU* 3.2 3.9 + - - +
382t GLU* 2.9 38.7 + - - +
445t TYR* 3.6 17.6 - - + -
448t LEU* 3.4 17.0 - - + +
449t LEU* 5.2 3.4 - - + -
452t ILE* 4.0 16.8 - - + -
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Residues in contact with HIS 379 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375t LYS 2.9 12.6 + - - +
376t ASP* 3.5 15.3 - - - +
378t ALA* 1.3 75.4 - - - +
380t ILE* 1.3 64.0 + - + +
382t GLU* 3.3 17.0 + - - +
383t GLY 3.3 4.7 + - - -
418t SER* 2.6 34.1 + - - -
420t LYS* 4.6 16.5 - - + +
421t GLN* 2.8 52.3 + - + -
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Residues in contact with ILE 380 (chain t).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376t ASP* 3.2 16.2 + - + +
377t ARG* 3.2 32.9 + - - +
379t HIS* 1.3 76.5 - - + +
381t LEU* 1.3 59.2 + - - +
383t GLY* 3.0 5.5 + - - -
384t LEU* 3.0 33.7 + - + +
420t LYS* 3.4 43.7 - - + +
421t GLN* 4.2 4.6 - - - +
424t ALA* 3.7 23.7 - - + +
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Residues in contact with LEU 381 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377t ARG* 2.9 42.1 + - - +
378t ALA 3.2 8.0 + - - +
380t ILE* 1.3 75.0 - - - +
382t GLU* 1.3 57.5 + - - +
384t LEU* 3.3 14.6 + - + +
385t ARG* 2.9 35.9 + - - +
441t ILE* 4.0 24.6 - - + +
444t GLU* 3.7 27.8 - - + +
445t TYR* 3.7 40.2 - - + +
448t LEU* 4.1 13.9 - - + -
----------------------------------------------------------
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Residues in contact with GLU 382 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468S ARG* 6.0 0.2 + - - -
378t ALA* 2.9 24.4 + - - +
379t HIS* 3.4 23.1 + - - +
380t ILE 3.2 0.2 - - - -
381t LEU* 1.3 75.2 - - - +
383t GLY* 1.3 60.7 + - - +
385t ARG* 3.4 18.3 + - - +
386t ILE* 3.2 32.8 + - + +
421t GLN* 3.9 7.1 + - - +
445t TYR* 2.7 34.5 + - + +
449t LEU* 5.5 0.9 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379t HIS 3.3 4.2 + - - -
380t ILE 3.0 8.7 + - - -
382t GLU* 1.3 74.8 - - - +
384t LEU* 1.3 58.0 + - - +
386t ILE* 3.4 4.7 + - - +
387t ALA 3.0 22.9 + - - -
417t LEU* 4.0 12.6 - - - -
421t GLN* 3.5 25.2 - - - +
425t ILE* 3.5 16.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU 384 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377t ARG* 5.0 6.5 - - - +
380t ILE* 3.0 26.2 + - + +
381t LEU* 3.3 24.7 + - + +
383t GLY* 1.3 72.1 - - - +
385t ARG* 1.3 55.9 + - - +
387t ALA* 3.2 4.8 + - - +
388t LEU* 2.8 35.7 + - - +
424t ALA* 4.1 22.7 - - + +
425t ILE* 4.2 7.6 - - + -
428t MET* 3.8 33.3 - - + +
441t ILE* 4.2 29.6 - - + +
----------------------------------------------------------
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Residues in contact with ARG 385 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468S ARG* 3.4 53.5 - - - +
470S ASP* 3.7 10.7 + - - -
381t LEU 2.9 24.5 + - - +
382t GLU* 3.5 18.9 + - - +
383t GLY 3.3 0.2 - - - -
384t LEU* 1.3 72.9 - - - +
386t ILE* 1.3 54.7 + - - +
388t LEU* 3.2 5.0 + - - +
389t ASP* 2.9 45.4 + - - +
441t ILE* 3.9 17.9 - - + -
442t GLU* 2.5 41.1 + - + +
445t TYR* 3.8 39.9 + - - -
----------------------------------------------------------
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Residues in contact with ILE 386 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468S ARG* 4.6 14.8 - - - +
1V G 5.5 13.2 - - - +
382t GLU* 3.2 21.4 + - + +
383t GLY 3.5 5.6 - - - +
385t ARG* 1.3 75.1 - - - +
387t ALA* 1.3 64.4 + - - +
389t ASP* 4.5 3.1 + - - -
390t HIS* 2.9 47.6 + - + +
394t ILE* 5.0 0.4 - - + +
415t PHE* 4.4 26.5 - - + +
416t LYS 5.7 2.0 - - - +
417t LEU* 4.1 29.6 - - + -
421t GLN* 5.4 2.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 387 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383t GLY 3.0 17.4 + - - +
384t LEU 3.2 5.1 + - - +
386t ILE* 1.3 75.2 - - - +
388t LEU* 1.3 57.6 + - - +
390t HIS 3.4 1.4 - - - -
391t ILE* 3.0 35.3 + - + +
394t ILE* 3.6 18.6 - - + +
425t ILE* 3.6 32.5 - - + -
428t MET* 3.9 14.4 - - + -
----------------------------------------------------------
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Residues in contact with LEU 388 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399r ARG* 4.8 4.3 + - - -
384t LEU 2.8 20.2 + - - +
385t ARG* 3.8 5.4 - - - +
387t ALA* 1.3 72.3 - - - +
389t ASP* 1.3 61.9 + - - +
390t HIS 3.5 0.3 + - - -
391t ILE* 3.6 25.2 + - - +
428t MET* 5.2 5.8 - - - +
432t ARG 5.8 4.0 - - - +
433t LEU* 5.6 6.1 - - + -
438t ARG* 3.8 35.7 + - + +
441t ILE* 5.7 6.3 - - + -
----------------------------------------------------------
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Residues in contact with ASP 389 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468S ARG* 3.1 29.6 + - - +
399r ARG* 5.7 2.1 + - - -
385t ARG* 2.9 25.1 + - - +
386t ILE* 3.8 4.5 - - - +
387t ALA 3.3 0.2 - - - -
388t LEU* 1.3 78.8 - - - +
390t HIS* 1.3 76.8 + - + +
391t ILE 3.7 0.2 - - - -
438t ARG* 4.1 17.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 390 (chain t).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468S ARG* 5.7 2.6 + - - -
1V G 4.1 41.6 + + - +
2V A 6.0 1.6 - - - -
2019W T 6.1 0.7 - - - -
386t ILE* 2.9 44.5 + - + +
387t ALA 3.4 3.4 - - - -
389t ASP* 1.3 91.3 + - + +
391t ILE* 1.3 63.0 + - - +
392t ASP 3.3 2.5 - - - -
393t GLU* 3.1 35.4 + - - +
394t ILE* 3.1 13.0 + - + +
415t PHE* 4.2 19.1 - + + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il