Contacts of the helix formed by residues 147 - 162 (chain L) in PDB entry 6QXT
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 147 (chain L).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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144L ASP* 3.7 18.1 + - - +
145L PRO 3.4 4.2 - - - +
146L SER* 1.3 80.4 - - - +
148L ARG* 1.3 59.9 + - - +
149L GLU* 3.2 4.6 + - - +
150L GLY* 3.4 7.1 + - - +
151L HIS* 3.1 24.9 + - - +
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Residues in contact with ARG 148 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136L LEU* 3.7 35.6 - - + +
139L GLY 5.2 1.8 - - - -
140L LEU* 4.9 12.1 - - + +
146L SER* 3.2 14.4 - - - -
147L ASN* 1.3 74.1 - - - +
149L GLU* 1.3 59.8 + - - +
151L HIS* 3.7 9.0 - - - +
152L SER* 2.9 28.9 + - - -
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Residues in contact with GLU 149 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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110L ILE* 5.2 15.5 - - + +
114L ILE* 6.0 5.4 - - + -
147L ASN* 3.2 1.7 - - - +
148L ARG* 1.3 75.6 - - - +
150L GLY* 1.3 60.0 + - - +
152L SER* 3.2 5.5 + - - -
153L ALA* 2.9 27.5 + - - +
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Residues in contact with GLY 150 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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147L ASN* 3.4 10.7 + - - +
149L GLU* 1.3 78.4 - - - +
151L HIS* 1.3 59.6 + - - +
153L ALA* 3.5 18.5 - - - +
154L ARG* 3.8 7.8 + - - +
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Residues in contact with HIS 151 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136L LEU* 5.9 2.5 - - + -
146L SER 5.5 1.1 - - - +
147L ASN 3.1 17.0 + - - +
148L ARG* 3.9 9.9 - - - +
150L GLY* 1.3 76.2 - - - +
152L SER* 1.3 62.3 + - - +
153L ALA 3.6 0.2 + - - -
154L ARG* 3.9 5.1 + - - +
155L ILE* 3.7 16.3 + - - +
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Residues in contact with SER 152 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114L ILE* 5.1 14.6 - - - -
117L GLN* 6.2 3.1 - - - -
133L ILE* 4.7 17.7 - - - +
136L LEU* 4.7 13.4 - - - +
148L ARG 2.9 18.4 + - - -
149L GLU* 3.2 6.7 + - - -
151L HIS* 1.3 75.0 - - - +
153L ALA* 1.3 65.0 + - - +
155L ILE* 3.3 7.2 + - - +
156L TYR* 2.9 25.2 + - - +
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Residues in contact with ALA 153 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149L GLU 2.9 13.2 + - - +
150L GLY* 3.5 15.5 - - - +
151L HIS 3.3 0.2 - - - -
152L SER* 1.3 75.8 - - - +
154L ARG* 1.3 65.3 + - - +
156L TYR* 2.9 7.7 + - - +
157L PHE* 2.9 26.1 + - - +
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Residues in contact with ARG 154 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150L GLY 3.8 7.7 + - - +
151L HIS* 3.9 6.3 + - - +
152L SER 3.5 0.2 - - - -
153L ALA* 1.3 78.8 - - - +
155L ILE* 1.3 57.0 + - - +
157L PHE* 4.7 3.8 - - - +
158L ASN* 2.8 35.7 + - + +
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Residues in contact with ILE 155 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129L LYS* 4.8 18.0 - - + +
132L SER* 5.7 6.5 - - - -
133L ILE* 5.6 5.6 - - + +
151L HIS 3.7 10.9 + - - +
152L SER* 3.3 10.5 + - - +
153L ALA 3.1 1.2 - - - -
154L ARG* 1.3 77.7 - - - +
156L TYR* 1.3 58.2 + - - +
158L ASN* 4.1 3.1 - - - +
159L THR* 2.9 31.2 + - - -
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Residues in contact with TYR 156 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117L GLN* 4.6 22.2 - - + +
152L SER 2.9 16.7 + - - +
153L ALA* 2.9 7.4 + - - +
155L ILE* 1.3 78.1 - - - +
157L PHE* 1.3 59.1 + - - +
159L THR* 3.3 5.2 + - - -
160L LEU* 2.9 29.2 + - - +
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Residues in contact with PHE 157 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153L ALA 2.9 14.5 + - - +
154L ARG* 4.5 2.7 - - - +
156L TYR* 1.3 77.1 - - - +
158L ASN* 1.3 58.9 + - - +
160L LEU* 4.4 5.2 - - - -
161L PHE* 2.9 33.2 + - + +
162L GLY 3.7 3.2 + - - +
165L PHE* 4.9 9.8 - - + +
166L THR* 5.6 6.7 - - - -
167L ARG* 5.8 4.0 - - + +
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Residues in contact with ASN 158 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154L ARG* 2.8 24.0 + - + +
155L ILE* 4.1 3.4 - - - +
157L PHE* 1.3 76.6 - - - +
159L THR* 1.3 61.7 + - - +
162L GLY* 3.1 35.5 + - - +
163L ASN* 3.6 15.5 + - + +
165L PHE 5.0 4.0 + - - +
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Residues in contact with THR 159 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121L LEU* 5.5 7.6 - - - -
126L PHE* 5.5 7.4 - - - -
129L LYS* 4.3 19.7 - - - -
155L ILE 2.9 20.8 + - - -
156L TYR* 3.6 5.8 - - - -
157L PHE 3.2 0.2 - - - -
158L ASN* 1.3 77.4 - - - +
160L LEU* 1.3 68.5 + - - +
162L GLY* 4.2 1.7 + - - -
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Residues in contact with LEU 160 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156L TYR 2.9 17.9 + - - +
157L PHE* 3.8 5.6 - - - +
159L THR* 1.3 80.2 - - - +
161L PHE* 1.3 63.0 + - + +
162L GLY 3.7 0.2 + - - -
227L ASP* 5.4 7.0 - - + +
231L TYR* 4.7 22.7 - - + +
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Residues in contact with PHE 161 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157L PHE* 2.9 9.2 + - + +
160L LEU* 1.3 78.8 - - + +
162L GLY* 1.3 58.8 + - - +
164L ASP* 6.1 0.2 - - - +
165L PHE* 3.6 26.9 + - + +
173L ILE* 5.8 8.3 - - + -
234L ARG* 6.1 4.9 - - + -
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Residues in contact with GLY 162 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158L ASN* 3.1 30.1 + - - -
159L THR 4.2 1.5 + - - -
160L LEU 3.4 2.8 + - - -
161L PHE* 1.3 79.1 - - - +
163L ASN* 1.3 65.6 + - - -
164L ASP* 3.2 3.1 - - - -
165L PHE* 3.2 13.9 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il