Contacts of the helix formed by residues 86 - 115 (chain E) in PDB entry 6R90


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 86 (chain E).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85E  PHE*     1.3    74.8    -      -       -      +
     87E  SER*     1.3    66.8    +      -       -      +
     88E  SER*     4.2     6.8    -      -       -      +
     89E  ALA*     3.0    24.2    +      -       +      +
     90E  VAL*     3.2    13.4    +      -       -      +
     81F  THR*     4.6    10.8    -      -       +      +
     82F  VAL      3.4    14.0    +      -       -      +
     83F  THR*     3.9    18.6    -      -       -      +
     84F  ALA*     3.5    24.1    +      -       -      +
    101I    A      6.4     0.2    -      -       -      -
     48J    T      4.8     5.7    +      -       -      -
     49J    C      3.3    23.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 87 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69E  GLN*     5.4     7.9    -      -       -      +
     85E  PHE      3.7     2.8    +      -       -      -
     86E  GLN*     1.3    72.0    -      -       -      +
     88E  SER*     1.3    66.1    +      -       -      +
     90E  VAL*     3.0    12.0    +      -       -      +
     91E  MET*     2.9    32.0    +      -       -      +
     49J    C      4.3     8.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 88 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86E  GLN*     3.2     7.3    -      -       -      +
     87E  SER*     1.3    83.7    +      -       -      +
     89E  ALA*     1.3    56.5    +      -       -      +
     91E  MET*     3.2    11.8    +      -       -      +
     92E  ALA*     2.9    28.2    +      -       -      +
     84F  ALA*     4.6     9.7    -      -       -      +
    101F  PHE*     4.8    19.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 89 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85E  PHE*     4.6    10.5    -      -       +      -
     86E  GLN*     3.0    23.7    +      -       +      +
     88E  SER*     1.3    78.8    -      -       -      +
     90E  VAL*     1.3    58.1    +      -       -      +
     92E  ALA*     3.3     5.4    +      -       -      +
     93E  LEU*     2.9    34.3    +      -       -      +
     82F  VAL      4.4     2.7    -      -       -      +
     83F  THR      4.1     5.4    -      -       -      +
     84F  ALA*     3.8    33.9    -      -       -      +
     87F  VAL*     4.6     7.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 90 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65E  LYS*     5.0     4.5    -      -       +      +
     68E  PHE*     3.6    25.5    -      -       +      -
     69E  GLN*     4.4    34.8    -      -       +      +
     72E  VAL*     5.0     8.1    -      -       +      -
     85E  PHE*     4.3    23.3    -      -       +      -
     86E  GLN      3.2    11.9    +      -       -      +
     87E  SER*     3.0     8.8    +      -       -      +
     89E  ALA*     1.3    75.8    -      -       -      +
     91E  MET*     1.3    63.3    +      -       -      +
     93E  LEU*     3.3     8.7    +      -       +      +
     94E  GLN*     2.9    32.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 91 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    105C  GLN*     4.9     8.7    -      -       -      +
     61E  LEU*     3.3    30.7    -      -       +      +
     65E  LYS*     3.8    28.9    -      -       -      -
     87E  SER*     2.9    22.0    +      -       -      +
     88E  SER*     3.2    14.6    +      -       -      +
     90E  VAL*     1.3    78.7    -      -       -      +
     92E  ALA*     1.3    62.0    +      -       -      +
     94E  GLN*     3.3     7.8    +      -       -      +
     95E  GLU*     3.0    29.2    +      -       +      +
    101F  PHE*     5.1    11.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 92 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     88E  SER      2.9    16.9    +      -       -      +
     89E  ALA*     3.6     7.4    -      -       -      +
     91E  MET*     1.3    76.9    -      -       -      +
     93E  LEU*     1.3    63.6    +      -       -      +
     95E  GLU*     3.2     5.1    +      -       -      +
     96E  ALA*     2.9    20.3    +      -       -      +
     84F  ALA*     5.2     4.5    -      -       +      -
     87F  VAL*     4.9    10.5    -      -       +      -
     88F  VAL*     5.6     3.6    -      -       +      -
     98F  LEU*     3.4    30.3    -      -       +      +
    101F  PHE*     4.3    21.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 93 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68E  PHE*     3.8    13.2    -      -       +      -
     72E  VAL*     4.5    13.0    -      -       +      -
     85E  PHE*     4.3    20.4    -      -       +      -
     89E  ALA      2.9    26.6    +      -       -      +
     90E  VAL*     3.6     9.2    -      -       -      +
     92E  ALA*     1.3    75.9    -      -       -      +
     94E  GLN*     1.3    57.6    +      -       -      +
     96E  ALA*     3.2     5.9    +      -       +      +
     97E  CYS*     2.9    35.0    +      -       -      -
     63F  LEU*     5.1     7.2    -      -       +      -
     66F  VAL*     4.5    17.5    -      -       +      -
     67F  ILE*     4.7    13.7    -      -       +      -
     70F  ALA*     6.2     0.2    -      -       +      -
     87F  VAL*     3.5    36.3    -      -       +      -
     91F  LEU*     5.2     2.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 94 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61E  LEU*     3.8    23.4    -      -       +      +
     63E  ILE*     2.7    36.0    +      -       +      +
     64E  ARG      4.7     0.2    -      -       -      -
     65E  LYS*     3.8    22.6    -      -       -      +
     68E  PHE*     3.6    39.0    -      -       +      -
     90E  VAL*     2.9    19.1    +      -       -      +
     91E  MET*     3.7     8.3    -      -       -      +
     93E  LEU*     1.3    75.2    -      -       -      +
     95E  GLU*     1.3    65.0    +      -       -      +
     97E  CYS*     3.3     0.7    +      -       -      +
     98E  GLU*     2.9    52.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 95 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102C  THR*     5.0     2.6    -      -       +      +
    103C  ILE      4.7     1.2    -      -       -      +
    104C  ALA*     4.0     7.9    -      -       +      -
    105C  GLN*     2.2    64.1    +      -       -      +
    106C  GLY      4.6     1.2    +      -       -      -
     59E  THR      5.0     1.6    -      -       -      +
     61E  LEU*     3.3    22.7    -      -       +      +
     91E  MET*     3.0    21.2    +      -       +      +
     92E  ALA*     3.4    11.2    -      -       -      +
     94E  GLN*     1.3    76.3    -      -       -      +
     96E  ALA*     1.3    62.6    +      -       -      +
     98E  GLU*     4.0     1.8    -      -       -      +
     99E  ALA*     3.0    27.4    +      -       -      +
     98F  LEU*     4.6    13.2    -      -       +      -
    101F  PHE*     5.0     4.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 96 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102C  THR*     4.7    12.3    +      -       +      +
     92E  ALA      2.9    12.7    +      -       -      +
     93E  LEU*     3.6     9.2    -      -       +      +
     95E  GLU*     1.3    76.6    -      -       -      +
     97E  CYS*     1.3    65.5    +      -       -      +
     99E  ALA*     3.8     1.2    -      -       -      +
    100E  TYR*     2.9    25.5    +      -       -      +
     62F  PHE*     5.3     5.6    -      -       +      -
     91F  LEU*     4.3    31.0    -      -       +      -
     96F  ARG*     5.6     3.4    -      -       +      +
     98F  LEU*     4.6     6.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with CYS 97 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63E  ILE*     6.1     1.8    -      -       +      -
     68E  PHE*     4.0    17.7    -      -       +      -
     93E  LEU*     2.9    25.0    +      -       -      +
     94E  GLN      3.8     4.0    -      -       -      +
     96E  ALA*     1.3    77.9    -      -       -      +
     98E  GLU*     1.3    59.9    +      -       +      +
    100E  TYR*     3.2     7.6    +      -       -      +
    101E  LEU*     2.9    33.8    +      -       +      +
     59F  LEU*     4.2    18.2    -      -       +      -
     62F  PHE*     4.7    14.4    -      -       -      -
     63F  LEU*     3.7    34.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 98 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61E  LEU*     4.1    13.8    -      -       +      +
     62E  LEU*     3.2    34.1    +      -       -      +
     63E  ILE*     3.1    50.3    +      -       +      +
     94E  GLN*     2.9    29.5    +      -       +      +
     95E  GLU*     4.2     2.9    -      -       -      +
     97E  CYS*     1.3    75.2    -      -       +      +
     99E  ALA*     1.3    60.3    +      -       -      +
    101E  LEU*     3.3     4.9    +      -       +      +
    102E  VAL*     2.9    36.8    +      -       +      +
     38F  LEU*     3.5    17.9    -      -       +      +
     41F  ARG*     5.3     0.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 99 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102C  THR*     3.8    26.9    -      -       +      +
     95E  GLU*     3.0    18.7    +      -       -      +
     96E  ALA      3.9     2.0    -      -       -      +
     98E  GLU*     1.3    76.3    -      -       -      +
    100E  TYR*     1.3    62.2    +      -       -      +
    102E  VAL*     3.3     8.7    +      -       -      +
    103E  GLY*     3.0    20.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 100 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96E  ALA      2.9    17.5    +      -       -      +
     97E  CYS*     3.4     8.1    -      -       -      +
     99E  ALA*     1.3    77.6    -      -       -      +
    101E  LEU*     1.3    74.4    +      -       +      +
    103E  GLY*     3.3     2.3    +      -       -      -
    104E  LEU*     3.0    36.7    +      -       +      +
    129E  ARG*     4.1    11.1    +      -       -      -
    132E  ARG*     4.4     7.2    +      -       -      +
    134E  GLU*     2.6    41.1    +      -       -      -
     58F  VAL*     4.4    11.4    -      -       +      +
     59F  LEU*     5.5     3.8    -      -       +      -
     62F  PHE*     3.8    50.2    -      +       +      +
     96F  ARG*     3.9    32.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 101 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63E  ILE*     5.1     5.6    -      -       +      -
     97E  CYS*     2.9    21.9    +      -       +      +
     98E  GLU*     3.9     5.4    -      -       -      +
    100E  TYR*     1.3    94.1    -      -       +      +
    102E  VAL*     1.3    57.9    +      -       -      +
    104E  LEU*     3.6    14.2    -      -       +      +
    105E  PHE*     2.9    45.6    +      -       +      -
     30F  ILE*     5.7     2.5    -      -       +      -
     35F  ILE*     5.7     0.7    -      -       +      -
     38F  LEU*     3.9    27.4    -      -       +      -
     55F  THR*     4.4    25.6    -      -       +      -
     58F  VAL*     5.0     3.1    -      -       +      -
     59F  LEU*     4.3    35.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 102 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108C  VAL*     3.6    30.1    -      -       +      -
     98E  GLU*     2.9    28.4    +      -       +      +
     99E  ALA*     3.6     8.5    -      -       -      +
    100E  TYR      3.2     0.2    -      -       -      -
    101E  LEU*     1.3    76.8    -      -       -      +
    103E  GLY*     1.3    63.8    +      -       -      +
    105E  PHE*     3.3     5.3    +      -       -      +
    106E  GLU*     3.0    25.3    +      -       +      +
     38F  LEU*     4.2    29.8    -      -       +      +
     41F  ARG*     4.4    24.0    -      -       +      +
     42F  GLY*     4.5    11.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 103 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99E  ALA      3.0    14.4    +      -       -      -
    100E  TYR      3.8     2.9    -      -       -      -
    102E  VAL*     1.3    78.2    -      -       -      +
    104E  LEU*     1.3    63.5    +      -       -      +
    106E  GLU*     3.2     6.9    +      -       -      +
    107E  ASP*     2.9    30.5    +      -       -      +
    132E  ARG*     4.3    14.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 104 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100E  TYR*     3.0    29.2    +      -       +      +
    101E  LEU*     3.6    14.4    -      -       +      +
    103E  GLY*     1.3    78.2    -      -       -      +
    105E  PHE*     1.3    56.7    +      -       +      +
    107E  ASP*     3.4     3.3    +      -       +      -
    108E  THR*     2.5    41.8    +      -       -      +
    125E  ILE*     4.3    15.9    -      -       +      +
    128E  ALA*     3.8    25.8    -      -       +      -
    129E  ARG*     4.0    22.4    -      -       +      +
    132E  ARG*     4.8    15.4    -      -       -      +
    134E  GLU*     5.4     2.0    -      -       -      +
     55F  THR*     6.5     0.2    -      -       +      -
     58F  VAL*     4.0    26.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 105 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101E  LEU*     2.9    31.7    +      -       +      +
    102E  VAL*     3.9     4.7    -      -       -      +
    104E  LEU*     1.3    80.3    -      -       +      +
    106E  GLU*     1.3    58.4    +      -       -      +
    108E  THR*     3.6     9.2    -      -       -      -
    109E  ASN*     2.8    31.2    +      -       -      +
    120E  ILE*     4.0    26.5    -      -       +      -
    125E  ILE*     4.4    12.6    -      -       +      -
     35F  ILE*     3.8    27.6    -      -       +      -
     38F  LEU*     4.3     8.7    -      -       +      -
     39F  ALA*     3.5    45.3    -      -       +      -
     42F  GLY*     4.8     3.6    -      -       -      -
     44F  VAL*     4.1    10.2    -      -       +      +
     47F  ILE*     6.0     0.7    -      -       +      -
     51F  ILE*     4.3     8.5    -      -       +      -
     55F  THR*     4.1    17.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 106 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130A  ARG*     4.6     7.8    +      -       -      +
    108C  VAL*     6.0     1.2    -      -       -      +
    111C  ASN*     3.5    27.9    +      -       -      +
    113C  GLN*     4.1    10.4    +      -       -      +
     56E  GLN*     5.1     2.4    +      -       -      -
    102E  VAL*     3.0    15.7    +      -       +      +
    103E  GLY*     3.2    11.4    +      -       -      +
    105E  PHE*     1.3    75.9    -      -       -      +
    107E  ASP*     1.3    70.1    +      -       -      +
    109E  ASN*     3.1     5.6    +      -       -      +
    110E  LEU*     3.0    32.0    +      -       +      +
     41F  ARG      4.5     2.4    -      -       -      +
     42F  GLY*     3.0    34.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 107 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130A  ARG*     4.7     2.4    -      -       -      +
    131A  ILE*     3.6    45.0    -      -       +      +
    103E  GLY*     2.9    18.0    +      -       -      +
    104E  LEU*     3.9     4.0    -      -       -      +
    106E  GLU*     1.3    83.6    -      -       -      +
    108E  THR*     1.3    57.8    +      -       -      +
    110E  LEU*     3.2    11.7    +      -       -      +
    111E  CYS*     2.9    35.9    +      -       -      -
    128E  ALA*     4.5    12.6    -      -       +      -
    132E  ARG*     3.8    20.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 108 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104E  LEU*     2.5    32.9    +      -       -      +
    105E  PHE*     3.6    11.3    -      -       +      -
    107E  ASP*     1.3    77.2    -      -       -      +
    109E  ASN*     1.3    58.2    +      -       -      +
    111E  CYS*     3.2     7.5    +      -       -      +
    112E  ALA*     2.9    28.3    +      -       -      +
    120E  ILE*     4.3    17.9    -      -       +      -
    124E  ASP*     3.5    25.5    -      -       +      +
    125E  ILE*     3.8    28.2    -      -       +      +
    128E  ALA*     4.1     7.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 109 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113C  GLN*     4.2     8.3    -      -       -      +
    116C  LEU*     3.9    15.3    -      -       -      +
    105E  PHE      2.8    18.3    +      -       -      +
    106E  GLU*     3.5     6.7    -      -       -      +
    108E  THR*     1.3    76.2    -      -       -      +
    110E  LEU*     1.3    58.9    +      -       +      +
    112E  ALA*     3.3     5.7    +      -       -      +
    113E  ILE*     2.9    48.8    +      -       -      +
    118E  VAL*     4.8     7.6    -      -       -      +
    120E  ILE*     4.3    11.3    -      -       -      +
     42F  GLY      4.3     3.5    +      -       -      +
     43F  GLY      3.0    29.9    +      -       -      -
     44F  VAL*     3.9    20.1    -      -       +      +
     45F  LYS      5.2     0.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 110 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    127A  LEU*     4.1    18.4    -      -       +      +
    130A  ARG*     3.5    49.1    -      -       +      +
    131A  ILE*     5.9     2.5    -      -       +      -
    113C  GLN*     3.2    38.4    -      -       +      +
    106E  GLU*     3.0    24.5    +      -       +      +
    107E  ASP*     3.6    13.0    -      -       -      +
    109E  ASN*     1.3    77.7    -      -       +      +
    111E  CYS*     1.3    56.2    +      -       -      +
    113E  ILE*     3.2    10.0    +      -       +      +
    114E  HIS*     2.9    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 111 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114A  HIS*     3.6    10.6    -      -       -      -
    127A  LEU*     4.1    13.9    -      -       +      +
    131A  ILE*     3.3    31.6    -      -       -      -
    107E  ASP      2.9    20.5    +      -       -      +
    108E  THR*     3.6    10.1    -      -       -      +
    110E  LEU*     1.3    76.2    -      -       -      +
    112E  ALA*     1.3    62.9    +      -       -      +
    114E  HIS*     3.2    15.4    +      -       -      +
    115E  ALA      3.3     4.9    +      -       -      -
    124E  ASP*     4.1     9.6    -      -       +      +
    127E  LEU*     4.1    31.2    -      -       +      -
    128E  ALA*     5.0     7.4    -      -       -      -
    131E  ILE*     5.2     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 112 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114A  HIS*     4.5     0.7    -      -       -      -
    108E  THR      2.9    15.6    +      -       -      +
    109E  ASN*     3.6    10.1    -      -       -      +
    111E  CYS*     1.3    78.2    -      -       -      +
    113E  ILE*     1.3    57.2    +      -       -      +
    115E  ALA*     2.9    20.5    +      -       -      +
    117E  ARG*     3.2    34.2    +      -       -      +
    118E  VAL      5.3     0.9    -      -       -      -
    119E  THR      4.1    10.8    -      -       -      +
    120E  ILE*     4.4     8.5    -      -       +      -
    124E  ASP*     3.3    22.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 113 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113C  GLN*     3.8    36.8    -      -       +      +
    115C  VAL*     4.1    24.9    -      -       +      -
    116C  LEU*     4.8     8.5    -      -       +      -
    109E  ASN*     2.9    37.2    +      -       -      +
    110E  LEU*     3.2     9.6    +      -       +      +
    112E  ALA*     1.3    76.3    -      -       +      +
    114E  HIS*     1.3    63.0    +      -       -      +
    116E  LYS*     3.1    14.2    +      -       -      +
    117E  ARG      3.3    15.3    -      -       -      +
    118E  VAL*     5.4     0.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 114 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    111A  CYS      3.6    21.0    +      -       -      -
    114A  HIS*     5.9     1.1    -      +       +      -
    115A  ALA*     3.7    11.9    -      -       +      +
    117A  ARG*     4.0    10.8    +      -       -      -
    123A  LYS*     3.6    30.5    +      -       +      +
    124A  ASP*     2.8    57.7    +      -       -      -
    127A  LEU*     3.5    22.6    -      -       +      +
    110E  LEU      2.9    13.4    +      -       -      +
    111E  CYS      3.3    10.5    -      -       -      +
    112E  ALA      3.1     0.4    -      -       -      -
    113E  ILE*     1.3    79.3    -      -       -      +
    115E  ALA*     1.3    55.9    +      -       -      +
    116E  LYS*     3.2     7.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 115 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    114A  HIS*     3.6    33.7    -      -       +      +
    115A  ALA*     3.7    16.8    -      -       -      +
    111E  CYS      3.3     0.4    +      -       -      -
    112E  ALA      2.9    10.3    +      -       -      +
    114E  HIS*     1.3    77.2    -      -       -      +
    116E  LYS*     1.3    72.2    +      -       -      +
    117E  ARG*     3.1    30.6    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il