Contacts of the helix formed by residues 346 - 389 (chain C) in PDB entry 6RKU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 346 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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205C ILE* 4.9 11.0 - - + +
233C TYR 3.7 18.3 + - - +
234C ARG 4.1 16.4 + - - +
235C THR 4.8 8.3 + - - +
236C GLY* 5.8 0.9 - - - -
334C MET* 4.9 5.8 - - - -
345C MET* 1.3 77.3 - - - +
347C LEU* 1.3 65.6 + - - +
348C LYS* 4.2 9.7 - - - +
349C ASP* 2.8 36.5 + - - +
350C ILE* 3.4 21.7 + - - +
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Residues in contact with LEU 347 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167C LEU* 3.8 38.4 - - + -
185C HIS* 6.3 0.9 - - - +
205C ILE* 5.8 6.5 - - + +
208C LEU* 4.4 26.0 - - + -
209C MET* 5.8 0.4 - - - +
212C ILE* 4.4 24.9 - - + -
233C TYR* 4.2 35.8 + - + +
334C MET* 5.2 6.3 - - + -
346C ASN* 1.3 75.0 - - - +
348C LYS* 1.3 67.9 + - - +
350C ILE* 3.0 10.1 + - + +
351C ILE* 3.0 34.6 + - + +
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Residues in contact with LYS 348 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197C TYR* 4.3 20.0 - - + -
201C GLU 4.1 20.0 + - - -
202C ASP* 4.2 11.7 + - - +
203C ILE* 4.0 20.3 + - + +
205C ILE* 4.5 22.1 - - + +
208C LEU* 4.7 14.7 - - + +
346C ASN* 3.5 9.0 + - - +
347C LEU* 1.3 77.9 - - - +
349C ASP* 1.3 62.5 + - - +
351C ILE* 3.3 6.3 + - - +
352C ALA* 2.9 29.9 + - + +
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Residues in contact with ASP 349 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338C HIS* 5.7 0.5 - - - -
344C ILE 5.2 0.3 - - - +
345C MET* 3.6 31.5 - - + +
346C ASN* 2.8 31.6 + - - +
347C LEU 3.2 0.4 - - - -
348C LYS* 1.3 82.3 - - - +
350C ILE* 1.3 63.1 + - - +
352C ALA* 3.3 6.1 + - - +
353C ALA* 2.9 24.9 + - - +
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Residues in contact with ILE 350 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37C VAL* 4.8 13.2 - - + +
164C PRO* 6.0 3.4 - - + -
166C LEU* 4.4 28.9 - - + -
167C LEU* 3.9 43.7 - - + -
182C ILE* 5.8 4.0 - - + -
334C MET* 4.8 11.0 - - + -
345C MET* 4.7 20.0 - - + +
346C ASN 3.4 19.5 - - - +
347C LEU* 3.0 9.1 + - - +
349C ASP* 1.3 77.3 - - - +
351C ILE* 1.3 65.0 + - - +
353C ALA* 3.3 6.5 + - - +
354C PHE* 3.0 24.7 + - + +
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Residues in contact with ILE 351 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167C LEU* 4.7 10.1 - - + -
190C VAL* 6.4 0.2 - - + -
193C GLY 5.1 8.5 - - - +
194C CYS* 4.7 21.1 - - - +
197C TYR* 3.8 33.7 - - + -
208C LEU* 4.4 25.4 - - + -
212C ILE* 5.5 5.6 - - + -
347C LEU* 3.0 38.1 + - + +
348C LYS* 3.8 6.7 - - - +
350C ILE* 1.3 77.7 - - - +
352C ALA* 1.3 62.1 + - - +
354C PHE* 3.2 6.7 + - - +
355C VAL* 3.0 28.6 + - + +
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Residues in contact with ALA 352 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197C TYR* 4.0 26.4 - - - +
348C LYS* 2.9 17.9 + - + +
349C ASP* 3.7 7.0 - - - +
351C ILE* 1.3 78.4 - - - +
353C ALA* 1.3 61.4 + - - +
355C VAL* 3.2 3.5 + - - +
356C ARG* 3.0 32.2 + - + +
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Residues in contact with ALA 353 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37C VAL* 4.4 26.5 - - + +
38C ARG* 5.1 7.4 - - + +
338C HIS* 4.8 13.7 - - + -
345C MET* 5.3 1.1 - - + -
349C ASP 2.9 17.2 + - - +
350C ILE* 3.7 6.5 - - - +
352C ALA* 1.3 75.8 - - - +
354C PHE* 1.3 63.3 + - - +
356C ARG* 3.3 7.4 + - - +
357C HIS* 3.0 25.2 + - - +
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Residues in contact with PHE 354 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37C VAL 5.4 2.6 + - - -
38C ARG* 4.6 13.2 - - - +
161C THR* 4.3 12.8 - - + -
162C LYS* 4.0 17.0 - - - -
163C ILE 3.7 7.0 - - - -
164C PRO* 3.4 54.5 - - + -
191C ILE* 6.4 0.2 - - + -
194C CYS* 4.6 18.6 - - - -
350C ILE* 3.0 15.4 + - + +
351C ILE* 3.2 9.8 + - - +
353C ALA* 1.3 77.2 - - - +
355C VAL* 1.3 71.3 + - + +
357C HIS* 3.3 7.6 + - + +
358C ARG* 3.0 35.7 + - + +
506C LEU* 4.8 18.2 - - + -
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Residues in contact with VAL 355 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194C CYS* 5.6 4.5 - - + +
197C TYR* 4.3 24.2 - - + -
198C ILE* 4.7 21.8 - - + -
351C ILE* 3.0 21.9 + - + +
352C ALA* 3.7 5.8 - - - +
354C PHE* 1.3 84.4 - - + +
356C ARG* 1.3 66.1 + - + +
358C ARG* 3.2 6.6 + - + +
359C ARG* 2.9 52.3 + - + +
499C MET* 5.7 1.8 - - + -
502C ILE* 5.9 4.7 - - + -
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Residues in contact with ARG 356 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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352C ALA* 3.0 25.0 + - + +
353C ALA* 3.7 6.3 - - - +
354C PHE 3.3 0.2 - - - -
355C VAL* 1.3 77.8 - - + +
357C HIS* 1.3 62.8 + - - +
359C ARG* 3.2 28.8 + - - +
360C GLU* 3.0 24.6 + - - +
668D THR* 4.9 15.2 - - - +
669D HIS* 6.4 0.2 - - - +
671D VAL* 4.9 21.3 - - - +
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Residues in contact with HIS 357 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38C ARG* 3.7 45.2 + - + +
143C VAL* 5.2 1.4 - - + +
158C VAL* 3.7 24.2 - - + +
159C MET 3.6 20.5 + - - -
160C PRO* 4.1 5.6 - - + -
161C THR* 4.2 16.1 + - + +
353C ALA 3.0 16.8 + - - +
354C PHE* 3.6 9.0 + - + +
356C ARG* 1.3 76.4 - - - +
358C ARG* 1.3 65.5 + - - +
360C GLU* 3.3 12.7 + - + +
361C VAL* 3.0 51.6 + - + +
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Residues in contact with ARG 358 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160C PRO 4.7 2.6 + - - -
161C THR 3.2 26.0 + - - -
162C LYS* 3.3 41.0 - - - +
354C PHE* 3.0 31.1 + - + +
355C VAL* 3.6 7.4 - - + +
356C ARG 3.2 0.2 - - - -
357C HIS* 1.3 79.6 + - - +
359C ARG* 1.3 62.5 + - - +
361C VAL* 3.3 18.3 + - - +
362C VAL* 3.0 39.2 + - + +
365C ARG* 4.9 6.0 - - - +
502C ILE* 4.4 26.5 - - + +
505C GLU* 2.4 37.6 + - - +
506C LEU* 6.0 5.5 - - + +
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Residues in contact with ARG 359 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355C VAL* 2.9 36.0 + - + +
356C ARG* 3.2 26.2 + - - +
358C ARG* 1.3 77.6 - - - +
360C GLU* 1.3 62.1 + - - +
362C VAL* 3.3 3.4 + - - +
363C THR* 3.0 29.3 + - - +
498C LEU* 4.2 12.6 - - + +
499C MET* 3.7 33.5 - - - +
502C ILE* 4.1 21.5 - - + +
669D HIS* 5.1 9.0 - - + -
670D GLY* 4.6 17.5 + - - +
671D VAL* 4.3 20.8 - - - +
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Residues in contact with GLU 360 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38C ARG* 5.9 0.7 + - - -
142C THR 5.9 0.2 - - - +
356C ARG 3.0 15.9 + - - +
357C HIS* 3.3 11.5 + - + +
359C ARG* 1.3 77.3 - - - +
361C VAL* 1.3 66.4 + - + +
363C THR* 3.3 2.3 + - - -
364C ARG* 3.0 46.3 + - - +
669D HIS* 3.7 38.1 - - + +
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Residues in contact with VAL 361 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137C ASP* 5.9 3.1 - - + -
142C THR* 4.2 24.6 - - + +
143C VAL* 5.2 3.4 - - + -
160C PRO* 4.1 25.8 - - + -
161C THR 5.8 0.2 - - - +
357C HIS* 3.0 44.4 + - + +
358C ARG* 3.8 20.6 - - - +
360C GLU* 1.3 79.0 - - + +
362C VAL* 1.3 65.8 + - + +
364C ARG* 3.3 4.9 + - - +
365C ARG* 3.0 27.2 + - + +
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Residues in contact with VAL 362 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358C ARG* 3.0 46.0 + - + +
359C ARG* 3.7 5.4 - - - +
361C VAL* 1.3 77.9 - - + +
363C THR* 1.3 63.3 + - - +
365C ARG* 3.3 26.0 + - - +
366C THR* 3.0 35.2 + - - +
491C ILE* 5.8 6.3 - - + -
498C LEU* 4.6 20.0 - - + -
501C VAL* 5.2 11.7 - - + -
502C ILE* 4.5 12.3 - - + -
505C GLU* 4.7 4.7 - - - +
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Residues in contact with THR 363 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359C ARG* 3.0 15.6 + - - +
360C GLU 3.7 0.4 - - - -
362C VAL* 1.3 78.0 - - - +
364C ARG* 1.3 62.1 + - + +
366C THR* 3.2 7.5 + - - -
367C ILE* 3.0 39.1 + - + +
492C LEU* 4.5 13.2 - - + +
498C LEU* 3.8 18.3 - - - +
644D GLY* 5.6 5.6 - - - +
669D HIS* 3.5 39.9 + - + +
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Residues in contact with ARG 364 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141C GLU* 3.7 23.1 + - - +
142C THR* 2.6 34.9 + - - +
143C VAL* 3.4 26.1 + - - +
144C ASP* 3.8 16.1 + - - +
360C GLU* 3.0 45.0 + - + +
361C VAL 3.9 2.9 - - - +
363C THR* 1.3 76.0 - - + +
365C ARG* 1.3 64.0 + - - +
367C ILE* 3.2 12.4 + - + +
368C PHE* 3.0 23.4 + - - +
669D HIS* 4.8 7.4 - - - +
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Residues in contact with ARG 365 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137C ASP* 2.3 48.3 + - - -
140C LYS* 4.1 15.7 - - + +
142C THR* 4.3 13.7 - - + +
162C LYS* 5.0 5.5 - - - +
358C ARG* 4.9 9.1 - - - +
361C VAL* 3.0 20.9 + - + +
362C VAL* 3.7 25.7 + - - +
364C ARG* 1.3 74.9 - - - +
366C THR* 1.3 66.0 + - - +
368C PHE* 3.3 6.5 + - - +
369C GLU* 3.0 45.3 + - - +
501C VAL* 5.3 3.2 - - - +
505C GLU* 3.4 24.0 + - - -
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Residues in contact with THR 366 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362C VAL* 3.0 26.6 + - - +
363C THR* 3.2 5.6 + - - -
365C ARG* 1.3 81.3 + - - +
367C ILE* 1.3 62.5 + - - +
369C GLU* 3.3 7.2 + - - +
370C LEU* 2.9 22.7 + - - +
488C LEU* 3.9 18.0 - - + +
491C ILE* 3.8 26.6 - - + +
492C LEU* 3.7 31.9 - - + -
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Residues in contact with ILE 367 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363C THR* 3.0 31.3 + - + +
364C ARG* 3.7 11.4 - - + +
366C THR* 1.3 75.6 - - - +
368C PHE* 1.3 65.6 + - - +
370C LEU* 3.3 9.3 + - + +
371C ARG* 3.0 25.5 + - + +
492C LEU* 4.3 20.9 - - + -
642D GLN 6.1 0.9 - - - +
643D HIS* 5.1 4.5 - - + +
644D GLY* 4.2 27.4 - - - +
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Residues in contact with PHE 368 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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139C GLU 4.7 4.5 - - - -
140C LYS* 3.3 54.1 - - + +
141C GLU* 3.3 38.8 - - + +
364C ARG 3.0 10.7 + - - +
365C ARG 3.6 6.5 - - - +
366C THR 3.3 0.2 - - - -
367C ILE* 1.3 78.4 - - - +
369C GLU* 1.3 68.4 + - + +
371C ARG* 3.2 30.9 + - - +
372C LYS* 3.0 47.7 + - + +
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Residues in contact with GLU 369 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140C LYS* 2.7 43.2 + - + +
365C ARG* 3.0 32.1 + - - +
366C THR* 3.9 5.9 - - - +
368C PHE* 1.3 79.9 - - + +
370C LEU* 1.3 63.0 + - - +
372C LYS* 3.3 6.6 + - - +
373C ALA* 3.0 26.0 + - - +
484C GLN* 4.9 12.5 + - - +
488C LEU* 4.1 20.9 - - + +
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Residues in contact with LEU 370 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366C THR 2.9 17.6 + - - +
367C ILE* 3.5 7.4 - - + +
369C GLU* 1.3 77.0 - - - +
371C ARG* 1.3 63.2 + - - +
373C ALA* 3.4 1.9 + - - +
374C ARG* 2.9 47.0 + - - +
485C ILE* 4.1 27.8 - - + +
488C LEU* 3.7 27.9 - - + +
489C LEU* 4.9 10.3 - - + +
492C LEU* 4.0 24.5 - - + -
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Residues in contact with ARG 371 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141C GLU* 4.1 10.7 + - - -
367C ILE* 3.0 16.2 + - + +
368C PHE* 3.6 38.8 - - - +
370C LEU* 1.3 76.3 - - - +
372C LYS* 1.3 74.7 + - - +
374C ARG* 3.2 8.6 + - + +
375C ASP* 3.0 43.0 + - - +
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Residues in contact with LYS 372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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368C PHE* 3.0 42.2 + - + +
369C GLU* 3.7 7.6 - - - +
371C ARG* 1.3 89.1 - - - +
373C ALA* 1.3 62.6 + - - +
375C ASP* 3.2 11.1 + - + +
376C ARG* 3.0 24.9 + - + +
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Residues in contact with ALA 373 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369C GLU 3.0 17.6 + - - +
370C LEU* 3.9 2.5 - - - +
372C LYS* 1.3 77.5 - - - +
374C ARG* 1.3 62.0 + - - +
376C ARG* 3.3 7.2 + - - +
377C ALA* 2.9 25.6 + - - +
481C LEU* 4.5 18.9 - - + +
484C GLN* 4.8 14.8 - - + +
485C ILE* 3.8 24.3 - - + +
488C LEU* 5.3 0.7 - - + -
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Residues in contact with ARG 374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370C LEU* 2.9 41.2 + - + +
371C ARG* 3.4 14.4 - - + +
373C ALA* 1.3 77.9 - - - +
375C ASP* 1.3 63.3 + - - +
377C ALA* 3.3 4.7 + - - +
378C HIS* 2.9 22.3 + - - +
431C ALA* 2.7 43.4 + - - +
432C ALA* 3.6 6.0 - - - +
433C ARG* 2.4 45.7 + - - +
434C PRO* 3.7 27.4 - - + +
435C GLU* 4.5 8.3 - - - +
485C ILE* 4.6 8.4 - - - +
489C LEU* 5.6 2.6 - - - +
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Residues in contact with ASP 375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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371C ARG* 3.0 39.9 + - - +
372C LYS* 3.2 11.6 + - + +
374C ARG* 1.3 75.7 - - - +
376C ARG* 1.3 62.8 + - - +
378C HIS* 3.2 7.0 + - - +
379C ILE* 3.0 29.7 + - + +
434C PRO* 3.8 21.8 - - - +
436C TRP* 4.4 10.8 + - - -
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Residues in contact with ARG 376 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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372C LYS* 3.0 19.2 + - + +
373C ALA* 3.7 8.5 - - - +
374C ARG 3.3 0.4 - - - -
375C ASP* 1.3 76.7 - - - +
377C ALA* 1.3 63.8 + - - +
379C ILE* 3.2 17.7 + - - +
380C LEU* 3.0 28.9 + - + +
474C LEU* 6.1 1.4 - - - +
477C GLU* 3.1 27.9 + - - +
481C LEU* 3.8 20.9 - - + -
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Residues in contact with ALA 377 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373C ALA 2.9 17.4 + - - +
374C ARG* 3.8 5.8 - - - +
376C ARG* 1.3 76.0 - - - +
378C HIS* 1.3 63.3 + - - +
380C LEU* 3.2 5.0 + - - +
381C GLU* 2.9 31.3 + - - +
432C ALA* 4.8 10.3 - - + +
478C TYR* 4.6 14.5 - - + -
481C LEU* 4.1 24.0 - - + +
482C LEU* 5.9 3.4 - - + -
485C ILE* 5.8 8.1 - - + -
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Residues in contact with HIS 378 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374C ARG 2.9 14.4 + - - +
375C ASP* 3.2 9.2 + - - +
377C ALA* 1.3 77.5 - - - +
379C ILE* 1.3 73.5 + - + +
381C GLU* 3.6 22.0 + - - +
382C ALA* 3.7 11.1 + - - +
432C ALA 4.8 3.3 + - - +
433C ARG* 4.9 3.6 - - + -
434C PRO* 3.5 34.3 - - + +
436C TRP* 5.9 7.8 - + - -
437C LEU* 3.7 29.4 - - + +
451C THR* 4.9 4.7 - - + -
453C GLN* 5.6 6.1 + - + -
454C GLN* 3.0 37.7 + - + -
----------------------------------------------------------
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Residues in contact with ILE 379 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375C ASP* 3.0 16.5 + - + +
376C ARG* 3.7 19.5 - - - +
378C HIS* 1.3 86.0 - - - +
380C LEU* 1.3 64.6 + - - +
382C ALA* 3.3 7.7 + - - +
383C LEU* 3.0 27.6 + - + +
453C GLN* 3.7 37.5 - - + +
454C GLN* 5.1 7.9 - - + -
457C ALA* 4.2 25.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 380 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376C ARG* 3.0 24.8 + - - +
377C ALA* 3.8 5.8 - - - +
379C ILE* 1.3 77.9 - - - +
381C GLU* 1.3 62.6 + - - +
383C LEU* 3.2 9.2 + - + +
384C ALA* 2.9 26.0 + - + +
474C LEU* 3.9 29.6 - - + +
477C GLU* 3.4 47.1 - - + +
478C TYR* 3.7 35.0 - - + +
481C LEU* 4.8 4.7 - - + -
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Residues in contact with GLU 381 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377C ALA* 2.9 22.5 + - - +
378C HIS* 3.8 14.7 - - - +
379C ILE 3.2 0.2 - - - -
380C LEU* 1.3 78.8 - - - +
382C ALA* 1.3 62.7 + - - +
384C ALA* 3.2 7.3 + - - +
385C VAL* 3.0 30.0 + - + +
432C ALA* 3.9 27.3 - - - +
433C ARG* 6.1 0.7 - - - +
448C TYR* 4.9 11.3 + - + +
478C TYR* 3.1 38.4 + - + +
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Residues in contact with ALA 382 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378C HIS 3.7 2.5 + - - +
379C ILE* 3.3 7.4 + - - +
381C GLU* 1.3 79.5 - - - +
383C LEU* 1.3 59.1 + - - +
385C VAL* 3.3 6.2 + - - +
386C ALA* 2.9 30.0 + - - +
448C TYR* 4.0 8.4 + - - +
450C LEU* 4.5 5.8 - - + +
454C GLN* 3.5 50.9 - - + +
457C ALA* 6.3 1.1 - - + -
458C ILE* 4.2 7.1 - - + +
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Residues in contact with LEU 383 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C ILE* 3.0 22.9 + - + +
380C LEU* 3.6 11.9 - - + +
381C GLU 3.2 0.2 - - - -
382C ALA* 1.3 76.6 - - - +
384C ALA* 1.3 57.3 + - - +
386C ALA* 3.3 7.5 + - - +
387C LEU* 2.9 30.2 + - + +
457C ALA* 5.3 10.1 - - + +
458C ILE* 5.0 6.3 - - + +
461C LEU* 3.7 37.0 - - + +
465C LYS* 5.8 9.6 - - + -
474C LEU* 3.6 35.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 384 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380C LEU* 2.9 23.9 + - + +
381C GLU* 3.6 6.7 - - - +
383C LEU* 1.3 77.2 - - - +
385C VAL* 1.3 65.9 + - + +
387C LEU* 3.0 10.7 + - - +
388C ALA* 2.9 21.5 + - - +
421C ALA* 5.6 2.3 - - - +
474C LEU* 5.2 10.5 - - + +
----------------------------------------------------------
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Residues in contact with VAL 385 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381C GLU* 3.0 23.9 + - + +
382C ALA* 3.3 6.9 + - - +
384C ALA* 1.3 76.1 - - + +
386C ALA* 1.3 62.8 + - - +
388C ALA* 3.2 21.3 + - + +
389C ASN* 3.6 10.0 + - - +
415C TRP* 5.0 14.6 - - + -
417C LEU* 5.2 21.3 - - + -
421C ALA* 5.5 7.9 - - + -
448C TYR* 3.9 37.9 - - + -
450C LEU* 5.4 3.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 386 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382C ALA 2.9 17.1 + - - +
383C LEU* 3.6 5.2 - - - +
385C VAL* 1.3 74.6 - - - +
387C LEU* 1.3 62.1 + - - +
389C ASN 2.8 25.5 - - - +
390C ILE* 4.4 2.8 - - - +
393C ILE* 4.0 13.3 - - + +
458C ILE* 3.6 40.8 - - + -
461C LEU* 5.0 7.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 387 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383C LEU* 2.9 19.3 + - + +
384C ALA* 3.0 11.4 + - - +
386C ALA* 1.3 77.6 - - - +
388C ALA* 1.3 68.0 + - - +
389C ASN 4.4 2.3 - - - -
390C ILE* 4.4 10.9 - - - +
461C LEU* 5.7 4.9 - - + +
465C LYS* 3.9 25.1 - - + +
466C LEU* 5.2 10.3 - - + -
470C GLU* 5.4 0.7 - - + -
471C HIS* 3.9 35.7 - - + +
474C LEU* 4.2 24.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 388 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384C ALA 2.9 12.0 + - - +
385C VAL* 3.3 13.7 - - + +
386C ALA 3.1 0.8 - - - -
387C LEU* 1.3 82.9 - - - +
389C ASN* 1.3 70.8 + - - +
390C ILE* 3.6 5.2 + - - +
417C LEU* 5.8 0.9 - - - -
418C GLY* 5.1 6.5 - - - +
420C VAL* 5.9 4.9 - - + -
421C ALA* 4.0 25.4 - - + +
----------------------------------------------------------
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Residues in contact with ASN 389 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385C VAL* 3.6 7.4 + - - +
386C ALA 2.8 17.3 + - - +
388C ALA* 1.3 82.4 + - - +
390C ILE* 1.3 59.8 + - - +
391C ASP 3.9 0.2 - - - -
392C PRO* 4.6 14.1 - - + +
393C ILE* 3.2 18.8 - - + +
415C TRP* 4.7 23.2 - - + +
416C GLN* 4.0 26.2 + - - +
417C LEU* 3.8 20.6 + - - -
418C GLY* 4.4 3.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il