Contacts of the helix formed by residues 184 - 205 (chain C) in PDB entry 6S6A
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 184 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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183C LEU* 1.3 73.9 - - - +
185C ASP* 1.3 56.6 + - - +
186C ASP* 3.1 7.3 - - - +
187C HIS* 2.7 47.2 + - - +
188C LYS* 2.8 17.0 + - - +
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Residues in contact with ASP 185 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184C SER* 1.3 74.1 - - - +
186C ASP* 1.3 64.1 + - - +
188C LYS* 3.1 24.4 + - + +
189C ILE* 2.9 43.2 + - + +
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Residues in contact with ASP 186 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184C SER* 3.1 7.0 - - - +
185C ASP* 1.3 80.4 - - - +
187C HIS* 1.3 69.4 + - + +
189C ILE* 3.6 9.8 + - - +
190C GLU* 3.2 22.3 + - - +
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Residues in contact with HIS 187 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183C LEU* 3.9 22.2 - - + -
184C SER* 2.7 30.8 + - - +
186C ASP* 1.3 79.1 - - + +
188C LYS* 1.3 58.0 + - - +
190C GLU* 3.5 5.0 + - - +
191C THR* 2.7 35.5 + - - +
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Residues in contact with LYS 188 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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180C VAL* 3.6 53.6 + - + +
181C ASP* 4.6 4.2 - - - +
183C LEU* 4.0 21.4 - - + +
184C SER 2.8 15.1 + - - +
185C ASP* 3.1 27.0 + - + +
187C HIS* 1.3 73.0 - - - +
189C ILE* 1.3 55.0 + - + +
191C THR* 3.5 3.4 + - - -
192C GLN* 2.8 34.5 + - - +
217C LEU* 4.2 20.9 - - + +
222C ASP* 5.2 7.1 + - - -
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Residues in contact with ILE 189 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185C ASP* 2.9 36.9 + - + +
186C ASP* 3.9 8.7 - - - +
188C LYS* 1.3 72.2 - - + +
190C GLU* 1.3 64.0 + - - +
192C GLN* 3.3 15.0 + - - +
193C ARG* 2.9 60.9 + - - +
217C LEU* 6.2 0.2 - - - -
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Residues in contact with GLU 190 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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186C ASP 3.2 15.3 + - - +
187C HIS* 4.0 5.8 - - + +
188C LYS 3.4 0.2 - - - -
189C ILE* 1.3 80.4 - - - +
191C THR* 1.3 54.5 + - - +
193C ARG* 3.5 9.4 + - - +
194C ASP* 2.9 37.2 + - + +
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Residues in contact with THR 191 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146C ALA* 4.4 14.3 + - + +
150C TYR* 3.5 37.3 + - + -
177C ILE* 4.3 11.0 - - + -
183C LEU* 4.5 7.5 - - - +
187C HIS* 2.7 22.0 + - - +
188C LYS* 3.6 5.6 - - - -
190C GLU* 1.3 74.9 - - - +
192C GLN* 1.3 58.1 + - - +
194C ASP 3.1 0.2 + - - -
195C ILE* 2.7 50.7 + - + +
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Residues in contact with GLN 192 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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177C ILE* 4.2 15.3 - - + +
188C LYS 2.8 18.7 + - - +
189C ILE* 3.3 20.5 + - - +
191C THR* 1.3 71.5 - - - +
193C ARG* 1.3 57.1 + - - +
195C ILE* 3.3 1.0 + - - +
196C HIS* 2.8 56.7 + - + +
215C PHE* 5.6 4.5 - - + +
217C LEU* 4.0 34.5 - - + +
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Residues in contact with ARG 193 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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189C ILE* 2.9 43.9 + - + +
190C GLU* 3.9 11.0 - - - +
192C GLN* 1.3 78.8 - - + +
194C ASP* 1.3 56.4 + - - +
196C HIS* 3.7 6.9 - - - +
197C GLN* 3.0 32.6 + - - +
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Residues in contact with ASP 194 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150C TYR* 2.3 45.5 + - - +
190C GLU* 2.9 22.1 + - + +
191C THR 3.5 1.3 - - - +
193C ARG* 1.3 76.2 - - - +
195C ILE* 1.4 59.0 + - - +
197C GLN* 3.5 4.4 + - - +
198C ARG* 2.9 69.1 + - - +
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Residues in contact with ILE 195 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144C ILE* 4.1 28.9 - - + -
146C ALA* 5.5 0.7 - - + -
150C TYR* 3.7 34.8 - - + -
154C LEU* 4.7 9.0 - - + -
157C LEU* 5.5 0.2 - - + -
175C VAL* 4.8 0.2 - - + -
177C ILE* 3.9 29.8 - - + -
191C THR* 2.7 41.3 + - + +
192C GLN 4.0 1.6 - - - +
194C ASP* 1.4 67.7 - - - +
196C HIS* 1.3 66.7 + - - +
199C ALA* 2.9 34.0 + - + +
215C PHE* 3.7 21.5 - - + -
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Residues in contact with HIS 196 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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192C GLN* 2.8 38.0 + - + +
193C ARG* 3.7 8.3 - - - +
195C ILE* 1.3 80.5 - - - +
197C GLN* 1.3 61.6 + - - +
199C ALA* 3.8 0.7 - - - +
200C ASN* 3.0 43.2 + - - -
213C LEU 5.2 2.0 - - - -
215C PHE* 3.2 51.4 + + + +
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Residues in contact with GLN 197 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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193C ARG 3.0 17.6 + - - +
194C ASP* 3.5 8.1 - - - +
196C HIS* 1.3 79.8 - - - +
198C ARG* 1.3 55.7 + - + +
200C ASN* 3.6 2.2 - - - +
201C ASP* 2.6 68.8 + - - +
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Residues in contact with ARG 198 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150C TYR* 4.6 0.4 - - - -
151C MET* 3.3 29.5 - - - +
154C LEU* 3.7 28.0 - - + -
194C ASP* 2.9 50.1 + - - +
197C GLN* 1.3 77.4 - - + +
199C ALA* 1.3 58.1 + - - +
201C ASP* 4.1 6.5 - - - -
202C ASP* 2.7 45.7 + - - +
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Residues in contact with ALA 199 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154C LEU* 3.7 20.5 - - + +
157C LEU* 4.3 7.9 - - + -
158C HIS* 5.1 0.7 - - - -
195C ILE* 2.9 20.6 + - + +
196C HIS 3.8 2.0 - - - +
198C ARG* 1.3 76.5 - - - +
200C ASN* 1.3 59.7 + - - +
202C ASP* 4.0 5.8 - - - +
203C LEU* 3.6 26.3 + - - +
213C LEU* 3.8 22.6 - - + +
215C PHE* 3.9 11.0 - - + -
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Residues in contact with ASN 200 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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196C HIS* 3.0 45.5 + - - +
197C GLN* 3.7 3.1 - - - +
199C ALA* 1.3 75.1 - - - +
201C ASP* 1.3 65.1 + - - +
202C ASP 3.2 1.3 - - - -
203C LEU* 3.0 20.8 + - - +
204C ALA* 3.3 11.1 + - - +
209C GLU* 5.3 3.5 - - - +
211C LEU 5.5 1.2 - - - +
213C LEU* 4.3 18.2 + - - +
215C PHE* 3.9 12.1 - - - -
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Residues in contact with ASP 201 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197C GLN* 2.6 60.4 + - - +
198C ARG* 3.8 7.2 - - - +
200C ASN* 1.3 72.8 - - - +
202C ASP* 1.3 62.0 + - - +
203C LEU 3.4 0.5 + - - -
204C ALA* 3.5 9.9 + - - +
205C ASP* 3.2 25.5 - - - +
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Residues in contact with ASP 202 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C LEU* 4.9 12.0 - - - +
155C THR* 5.6 2.3 + - - -
158C HIS* 3.2 36.1 + - + +
198C ARG* 2.7 31.7 + - - +
199C ALA* 4.0 7.2 - - - +
201C ASP* 1.3 74.9 - - - +
203C LEU* 1.3 59.0 + - - +
204C ALA 3.5 0.2 - - - -
205C ASP* 3.8 15.3 + - - +
206C ALA* 4.0 4.2 + - - +
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Residues in contact with LEU 203 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158C HIS* 4.1 21.3 - - + +
161C VAL* 5.0 6.7 - - + -
162C SER* 5.7 1.3 - - - -
199C ALA 3.6 16.7 + - - +
200C ASN* 3.0 17.2 + - - +
202C ASP* 1.3 76.6 - - - +
204C ALA* 1.3 59.7 + - - +
205C ASP 3.4 0.4 - - - -
206C ALA 3.8 3.0 + - - -
208C LEU* 3.1 68.8 + - + +
209C GLU* 4.6 2.9 - - + -
211C LEU* 4.1 36.1 - - + +
213C LEU* 3.9 22.0 - - + -
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Residues in contact with ALA 204 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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200C ASN 3.3 7.8 + - - +
201C ASP* 3.6 9.6 - - - +
203C LEU* 1.3 75.6 - - - +
205C ASP* 1.3 66.6 + - - +
206C ALA 3.2 1.3 - - - -
207C GLY* 2.9 22.2 + - - -
209C GLU* 3.5 32.4 - - + +
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Residues in contact with ASP 205 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201C ASP 3.2 18.3 - - - +
202C ASP* 3.8 10.3 + - - +
203C LEU 3.4 0.8 - - - -
204C ALA* 1.3 82.1 - - - +
206C ALA* 1.3 56.2 + - - +
207C GLY 3.3 1.8 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il