Contacts of the helix formed by residues 286 - 314 (chain B) in PDB entry 6UWZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 286 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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134B VAL* 3.1 22.4 - - + +
137B PHE* 4.3 2.2 - - + -
278B LEU* 3.5 30.3 - - + -
284B ALA 3.7 8.5 - - - +
285B VAL* 1.3 86.4 - - + +
287B LEU* 1.3 53.6 + - - +
288B ILE* 4.1 11.9 - - + -
289B GLY* 2.7 9.8 + - - +
290B LYS 2.6 32.9 + - - -
219C PHE* 6.0 2.5 - - + -
223C TYR* 3.5 30.5 - - + +
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Residues in contact with LEU 287 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135B LEU 2.7 21.1 + - - +
136B TYR* 4.0 11.2 - - + +
137B PHE 3.3 12.1 + - - +
139B PHE* 3.9 22.9 - - + -
285B VAL 3.3 1.1 + - - -
286B PRO* 1.3 70.5 - - - +
288B ILE* 1.3 56.9 + - - +
290B LYS* 3.3 15.2 - - + +
291B TYR* 2.9 29.1 + - - +
472B ILE* 3.7 28.3 - - + +
473B PHE* 4.4 5.6 - - + -
475B MET* 3.6 31.9 - - + -
476B GLY* 3.7 27.8 - - - +
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Residues in contact with ILE 288 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137B PHE* 3.4 35.4 + - + +
138B PRO* 4.4 4.5 - - + -
232B PHE* 5.0 10.5 - - + +
233B ILE* 3.6 36.8 - - + -
236B CYS* 6.4 0.4 - - + -
274B THR* 3.5 32.1 - - + +
286B PRO* 4.1 6.3 - - + -
287B LEU* 1.3 78.4 - - - +
289B GLY* 1.3 61.7 + - - +
291B TYR* 3.3 19.8 + - + +
292B LEU* 2.9 41.1 + - + +
473B PHE* 4.5 5.8 - - + -
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Residues in contact with GLY 289 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271B LEU* 5.5 0.2 - - - -
285B VAL* 4.2 7.2 - - - -
286B PRO* 2.7 16.7 + - - +
288B ILE* 1.3 77.8 - - - +
290B LYS* 1.3 57.5 + - - -
292B LEU* 3.6 12.3 - - - +
293B MET* 2.9 35.1 + - - +
222C VAL* 4.6 3.5 - - - +
223C TYR* 4.2 18.6 - - - -
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Residues in contact with LYS 290 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135B LEU* 4.6 14.9 - - - +
285B VAL* 3.6 43.3 + - + +
286B PRO 2.6 11.8 + - - +
287B LEU* 3.3 26.5 - - + +
289B GLY* 1.3 72.5 - - - +
291B TYR* 1.3 57.8 + - - +
293B MET* 3.3 4.8 + - - +
294B PHE* 2.9 29.7 + - - +
472B ILE* 4.9 10.5 - - + -
475B MET* 5.0 10.1 - - + -
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Residues in contact with TYR 291 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233B ILE* 5.1 0.9 - - + -
236B CYS* 3.8 25.2 + - + -
237B VAL* 3.1 42.5 + - + +
240B SER* 3.9 5.9 + - - -
241B PHE* 5.6 0.2 - - - -
287B LEU 2.9 16.5 + - - +
288B ILE* 3.7 14.8 - - + +
290B LYS* 1.3 76.0 - - - +
292B LEU* 1.3 62.6 + - + +
294B PHE* 3.6 6.0 - + - +
295B ILE* 2.9 50.0 + - + +
469B THR* 3.5 29.7 + - + -
472B ILE* 4.0 30.7 - - + +
473B PHE* 3.9 22.0 - + + -
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Residues in contact with LEU 292 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236B CYS* 4.0 26.9 - - - -
267B GLN* 4.0 19.7 - - + +
270B PHE* 4.2 4.0 - - + -
271B LEU* 3.9 34.3 - - + +
274B THR* 3.6 29.2 - - + +
288B ILE* 2.9 31.1 + - + +
289B GLY* 3.6 7.9 - - - +
291B TYR* 1.3 81.2 - - + +
293B MET* 1.3 59.4 + - + +
295B ILE* 3.9 5.8 - - + -
296B MET* 2.8 36.7 + - - +
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Residues in contact with MET 293 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271B LEU* 3.6 31.2 - - + -
285B VAL* 6.0 0.4 - - + -
289B GLY 2.9 18.5 + - - +
290B LYS* 3.8 4.7 - - - +
292B LEU* 1.3 73.4 - - + +
294B PHE* 1.3 63.2 + - - +
296B MET* 3.6 19.9 - - - +
297B SER* 2.6 35.8 + - - +
222C VAL* 3.7 27.8 - - + -
226C ILE* 3.3 41.3 - - + -
227C PRO* 4.0 12.3 - - + -
230C LEU* 5.5 0.2 - - - -
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Residues in contact with PHE 294 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B LYS 2.9 18.1 + - - +
291B TYR* 3.6 10.3 - + - +
293B MET* 1.3 77.1 - - - +
295B ILE* 1.3 76.5 + - + +
297B SER* 3.4 4.5 + - - -
298B LEU* 2.9 37.7 + - + +
464B VAL* 3.8 36.8 - - + -
465B MET* 4.3 6.5 - - - -
468B GLY* 4.1 23.1 - - - -
469B THR* 4.3 4.3 - - - -
472B ILE* 4.3 17.9 - - + -
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Residues in contact with ILE 295 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236B CYS* 4.8 2.0 - - - -
240B SER* 3.1 34.8 - - - +
267B GLN* 3.5 22.4 - - + +
291B TYR* 2.9 48.7 + - + +
292B LEU* 3.4 12.1 - - - +
294B PHE* 1.3 85.1 - - + +
296B MET* 1.3 65.9 + - - +
298B LEU* 3.7 6.3 - - + +
299B VAL* 2.9 36.2 + - + +
465B MET* 3.7 25.1 - - + -
469B THR* 4.4 1.3 - - - +
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Residues in contact with MET 296 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264B LEU* 3.5 17.3 - - + +
267B GLN* 3.6 30.7 - - + +
268B ALA* 3.7 36.6 - - + +
271B LEU* 4.0 17.7 - - + -
292B LEU* 2.8 22.8 + - + +
293B MET* 3.6 29.8 - - + +
295B ILE* 1.3 78.3 - - + +
297B SER* 1.3 55.9 + - - +
299B VAL 3.3 0.5 + - - -
300B THR* 2.8 32.7 + - - -
227C PRO* 4.4 15.3 - - + -
230C LEU* 3.9 14.4 - - + -
262C PHE* 4.6 3.1 - - + -
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Residues in contact with SER 297 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293B MET* 2.6 24.2 + - - +
294B PHE* 3.7 5.1 - - - -
296B MET* 1.3 76.4 - - - +
298B LEU* 1.3 57.1 + - - +
300B THR* 3.3 2.8 + - - -
301B GLY* 2.9 25.1 + - - -
226C ILE* 4.8 6.8 - - - +
230C LEU* 3.9 26.4 - - - +
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Residues in contact with LEU 298 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294B PHE* 2.9 30.4 + - + +
295B ILE* 3.7 8.3 - - + +
296B MET 3.3 0.2 - - - -
297B SER* 1.3 76.5 - - - +
299B VAL* 1.3 58.6 + - - +
301B GLY* 3.3 2.6 + - - +
302B VAL* 2.9 30.8 + - - +
461B ILE* 4.1 29.5 - - + +
464B VAL* 4.2 15.9 - - + -
465B MET* 3.5 55.6 - - + +
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Residues in contact with VAL 299 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240B SER* 4.9 1.6 - - - -
243B ALA* 3.7 25.6 - - + -
260B ALA* 3.5 26.2 - - + +
264B LEU* 3.8 21.3 - - + +
267B GLN* 3.5 26.7 - - - +
295B ILE* 2.9 25.9 + - + +
298B LEU* 1.3 73.5 - - - +
300B THR* 1.3 61.7 + - - +
302B VAL* 3.2 6.9 + - + +
303B ILE* 2.9 29.4 + - + +
465B MET* 5.0 5.6 - - + -
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Residues in contact with THR 300 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264B LEU* 4.0 11.1 - - - +
296B MET 2.8 21.3 + - - -
297B SER 3.5 5.4 - - - -
299B VAL* 1.3 75.8 - - - +
301B GLY* 1.3 57.5 + - - +
303B ILE* 3.3 10.4 + - - +
304B VAL* 2.9 29.1 + - + +
230C LEU* 3.5 43.3 - - + +
233C ILE* 4.2 16.6 - - + -
234C LEU* 3.8 20.0 - - + -
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Residues in contact with GLY 301 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297B SER 2.9 14.5 + - - -
298B LEU* 3.3 4.2 + - - -
300B THR* 1.3 74.9 - - - +
302B VAL* 1.3 58.9 + - - +
304B VAL* 3.3 9.2 + - - +
305B ASN* 2.9 29.5 + - - +
461B ILE* 4.9 6.0 - - - +
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Residues in contact with VAL 302 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243B ALA* 3.7 26.7 - - + +
244B SER* 4.9 2.9 - - - +
246B ALA* 4.8 0.9 - - + -
247B PHE* 3.8 23.8 - - + -
260B ALA* 4.3 12.1 - - + -
298B LEU* 2.9 22.2 + - + +
299B VAL* 3.4 12.3 - - - +
301B GLY* 1.3 75.2 - - - +
303B ILE* 1.3 57.7 + - - +
305B ASN* 3.3 2.0 + - - +
306B CYS* 2.9 44.4 + - - -
461B ILE* 3.7 29.4 - - + +
465B MET* 5.2 2.7 - - + -
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Residues in contact with ILE 303 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257B MET* 3.3 23.4 - - + +
260B ALA* 3.3 28.0 - - + +
261B ILE* 3.7 20.9 - - + -
264B LEU* 4.3 9.9 - - + -
299B VAL* 2.9 36.1 + - + +
300B THR* 3.5 11.4 - - - +
301B GLY 3.2 0.2 - - - -
302B VAL* 1.3 75.2 - - - +
304B VAL* 1.3 63.8 + - - +
306B CYS* 3.3 3.6 + - - -
307B GLY 2.9 18.9 + - - -
234C LEU* 3.7 23.3 - - + -
237C LEU* 3.7 6.8 - - + +
251C LEU* 4.0 11.2 - - + -
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Residues in contact with VAL 304 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300B THR* 2.9 20.5 + - + +
301B GLY* 3.3 11.6 + - - +
303B ILE* 1.3 75.4 - - - +
305B ASN* 1.3 58.7 + - - +
307B GLY* 3.2 2.1 + - - -
308B ILE* 2.9 43.9 + - + +
233C ILE* 4.3 23.1 - - + -
234C LEU* 5.1 1.1 - - + -
237C LEU* 3.8 28.3 - - + +
701C POV 4.4 14.4 - - + -
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Residues in contact with ASN 305 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247B PHE* 3.9 10.6 - - + -
301B GLY 2.9 16.6 + - - +
302B VAL* 3.6 4.5 - - - +
303B ILE 3.2 0.2 - - - -
304B VAL* 1.3 76.4 - - - +
306B CYS* 1.3 59.9 + - - +
308B ILE* 3.2 13.2 + - - +
309B VAL* 2.9 37.9 + - - +
453B ILE* 3.6 6.6 - - - +
457B SER* 2.3 42.1 + - - -
461B ILE* 5.0 4.7 - - + +
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Residues in contact with CYS 306 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246B ALA* 4.9 9.0 - - - -
247B PHE* 4.0 15.0 - - - -
256B LYS* 4.2 31.5 - - + +
257B MET* 3.4 22.2 - - - -
260B ALA* 5.1 2.0 - - - -
302B VAL* 2.9 39.6 + - - +
303B ILE* 3.8 2.5 - - - +
305B ASN* 1.3 76.5 - - - +
307B GLY* 1.3 57.7 + - - +
309B VAL* 3.3 8.3 + - - +
310B LEU* 2.9 33.6 + - - +
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Residues in contact with GLY 307 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257B MET* 3.6 8.0 - - - +
303B ILE 2.9 12.2 + - - -
304B VAL 3.6 3.8 - - - -
305B ASN 3.2 0.2 - - - -
306B CYS* 1.3 73.7 - - - +
308B ILE* 1.3 58.8 + - - +
310B LEU* 3.3 4.0 + - - +
311B ASN* 2.9 28.9 + - - +
237C LEU* 4.7 3.1 - - - -
240C TYR* 4.3 6.5 - - - +
241C LEU* 3.7 28.6 - - - +
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Residues in contact with ILE 308 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304B VAL* 2.9 39.3 + - + +
305B ASN* 3.5 12.8 - - - +
307B GLY* 1.3 76.6 - - - +
309B VAL* 1.3 63.8 + - - +
311B ASN* 3.2 1.7 + - - +
312B PHE* 3.0 53.5 + - + -
453B ILE* 4.6 13.9 - - + -
240C TYR* 3.9 23.6 - - + -
701C POV 4.1 29.2 - - + -
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Residues in contact with VAL 309 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247B PHE* 5.8 0.7 - - + -
251B ALA* 5.3 5.4 - - + -
256B LYS* 4.6 9.4 - - + +
305B ASN* 2.9 25.9 + - - +
306B CYS* 3.6 9.2 - - - +
308B ILE* 1.3 76.0 - - - +
310B LEU* 1.3 58.2 + - - +
312B PHE* 3.4 6.6 + - - +
313B HIS* 2.9 30.2 + - + +
450B GLY* 3.5 26.5 - - - +
453B ILE* 3.3 30.1 - - + -
454B ASP* 4.1 23.8 - - + +
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Residues in contact with LEU 310 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251B ALA* 3.7 31.2 - - + +
253B SER 5.9 0.4 - - - +
254B GLY* 6.4 1.3 - - - -
256B LYS* 4.2 15.7 - - + -
257B MET* 3.5 34.1 - - + -
306B CYS 2.9 21.8 + - - +
307B GLY* 3.7 6.1 - - - +
309B VAL* 1.3 75.2 - - - +
311B ASN* 1.3 65.5 + - - +
313B HIS* 3.1 3.3 + - - -
314B PHE* 3.0 46.0 + - + +
241C LEU* 4.7 5.8 - - + -
242C PRO* 4.0 11.4 - - + -
245C ALA* 4.5 15.0 - - + -
247C GLU* 4.8 4.0 - - + -
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Residues in contact with ASN 311 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307B GLY 2.9 14.2 + - - +
308B ILE 3.4 8.1 - - - +
310B LEU* 1.3 76.9 - - - +
312B PHE* 1.3 60.3 + - - +
314B PHE* 3.5 6.2 + - - +
315B ARG* 2.7 64.0 + - - +
320B HIS* 5.1 8.7 + - - -
240C TYR* 3.2 52.2 + - + +
242C PRO* 3.9 14.9 - - - +
437C ARG* 4.8 5.9 - - - +
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Residues in contact with PHE 312 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308B ILE* 3.0 49.7 + - + +
309B VAL* 3.7 4.5 - - - +
311B ASN* 1.3 76.3 - - - +
313B HIS* 1.3 62.8 + - - +
314B PHE 3.3 0.7 + - - -
315B ARG* 3.3 39.8 + - - +
326B VAL* 4.8 10.8 - - + -
330B PHE* 5.3 6.3 - + - -
446B TRP* 3.3 53.1 - + + +
449B VAL* 3.7 19.1 - - + -
450B GLY* 4.7 2.0 - - - -
453B ILE* 3.9 18.4 - - + -
240C TYR* 4.5 1.1 - - - -
701C POV 3.5 32.1 - - + -
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Residues in contact with HIS 313 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251B ALA* 3.7 20.0 - - + +
252B GLU* 3.1 40.6 + - - +
309B VAL* 2.9 20.8 + - + +
310B LEU* 3.1 8.7 + - - +
312B PHE* 1.3 77.6 - - - +
314B PHE* 1.3 87.5 + + - +
315B ARG 3.5 6.1 + - - +
443B VAL* 4.7 11.8 - - - +
446B TRP* 4.2 15.3 + - - +
447B ASN* 3.1 32.3 + - + +
450B GLY* 5.3 3.3 - - - -
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Residues in contact with PHE 314 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251B ALA 4.3 12.3 - - - -
252B GLU* 6.0 0.7 - - - -
310B LEU* 3.0 41.3 + - + +
311B ASN 3.5 4.0 + - - +
312B PHE 3.2 0.2 - - - -
313B HIS* 1.3 98.7 - + - +
315B ARG* 1.3 61.5 + - - +
316B THR* 4.0 7.8 + - - +
319B THR* 5.2 1.6 + - - -
320B HIS* 5.3 2.0 - - - -
242C PRO* 3.6 29.4 - - + +
244C ASP* 3.5 47.0 - - + +
245C ALA* 3.8 20.0 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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