Contacts of the helix formed by residues 371 - 425 (chain A) in PDB entry 6UWZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 371 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370A PRO* 1.3 83.9 - - - +
372A VAL* 1.3 67.1 + - - +
373A LYS 3.1 1.3 - - - -
374A SER* 3.2 6.9 + - - +
375A ALA 3.0 17.7 + - - -
420B LYS* 5.5 8.0 + - - +
423B ILE* 3.4 9.1 - - + +
427B ASN* 3.4 30.3 + - - +
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Residues in contact with VAL 372 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A PRO* 3.8 21.3 - - + -
371A ASP* 1.3 77.0 - - - +
373A LYS* 1.3 66.2 + - + +
375A ALA* 3.3 14.2 + - - +
376A ILE* 3.6 13.8 + - + +
423B ILE* 3.6 31.5 - - + +
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Residues in contact with LYS 373 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A PRO* 3.8 32.6 - - - +
371A ASP 3.1 0.8 - - - -
372A VAL* 1.3 80.8 - - + +
374A SER* 1.3 65.6 + - - +
375A ALA 3.1 0.7 + - - -
376A ILE* 3.1 28.9 - - + +
377A GLU* 3.3 17.0 + - + +
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Residues in contact with SER 374 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A PRO 3.6 12.0 + - - -
371A ASP* 3.2 14.4 + - - -
373A LYS* 1.3 81.7 - - - +
375A ALA* 1.3 57.0 + - - +
377A GLU* 3.5 8.3 + - - +
378A GLY* 2.9 26.0 + - - -
427B ASN* 3.7 13.5 + - - +
430B VAL* 5.3 1.6 - - - +
434B LYS* 5.8 1.9 + - - -
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Residues in contact with ALA 375 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A ASP 3.0 9.1 + - - +
372A VAL 3.4 11.0 - - - +
373A LYS 3.1 1.0 - - - -
374A SER* 1.3 78.1 - - - +
376A ILE* 1.3 60.3 + - + +
378A GLY* 3.1 2.1 + - - -
379A VAL* 2.9 34.1 + - + +
423B ILE* 4.1 14.4 - - + -
426B THR* 3.4 31.3 + - + -
427B ASN* 3.3 12.5 + - - +
430B VAL* 4.7 0.8 - - - +
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Residues in contact with ILE 376 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372A VAL* 3.6 11.9 + - + +
373A LYS* 3.1 21.8 - - + +
375A ALA* 1.3 76.9 - - + +
377A GLU* 1.3 71.6 + - + +
379A VAL* 3.3 9.0 + - - +
380A LYS* 2.9 33.2 + - - +
412E GLU* 3.6 41.3 - - + +
413E ILE* 5.8 1.3 - - + -
415E SER* 6.0 3.5 - - - -
416E CYS* 3.9 33.5 - - + +
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Residues in contact with GLU 377 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A LYS* 3.3 23.6 + - + +
374A SER* 3.7 11.0 - - - +
375A ALA 3.2 0.4 - - - -
376A ILE* 1.3 87.5 - - + +
378A GLY* 1.3 56.3 + - - +
380A LYS* 3.3 29.4 + - - +
381A TYR* 2.9 27.4 + - - +
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Residues in contact with GLY 378 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374A SER 2.9 14.8 + - - -
375A ALA 3.6 1.1 - - - -
377A GLU* 1.3 75.0 - - - +
379A VAL* 1.3 59.5 + - - +
381A TYR* 3.1 6.1 + - - +
382A ILE* 2.9 32.1 + - - +
430B VAL* 3.4 38.7 - - - +
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Residues in contact with VAL 379 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A ALA* 2.9 18.0 + - + +
376A ILE* 3.7 9.2 - - - +
378A GLY* 1.3 75.0 - - - +
380A LYS* 1.3 57.6 + - - +
382A ILE* 3.2 10.8 + - + +
383A ALA* 3.0 26.5 + - - +
426B THR* 3.8 16.6 - - - +
430B VAL* 5.4 0.9 - - + -
606B OCT 4.4 13.9 - - + -
416E CYS* 4.2 11.0 - - - +
419E ALA* 3.6 20.6 - - + +
420E CYS* 3.8 25.6 - - - -
423E ILE* 4.0 11.4 - - + +
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Residues in contact with LYS 380 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A ILE* 2.9 19.5 + - - +
377A GLU* 3.6 32.1 + - - +
379A VAL* 1.3 77.4 - - - +
381A TYR* 1.3 56.6 + - - +
383A ALA* 3.3 4.9 + - + +
384A GLU* 2.9 27.7 + - - +
415E SER* 4.2 30.1 + - - +
419E ALA* 4.2 12.7 - - + +
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Residues in contact with TYR 381 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377A GLU 2.9 13.8 + - - +
378A GLY* 3.1 12.7 + - - +
380A LYS* 1.3 74.2 - - - +
382A ILE* 1.3 70.2 + - + +
384A GLU* 3.2 12.1 + - + +
385A HIS* 2.9 29.0 + - + +
430B VAL* 5.0 2.5 - - + -
433B ILE* 4.3 9.2 - - + -
434B LYS* 3.7 38.1 - - + +
437B ASN* 3.5 36.3 + - - +
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Residues in contact with ILE 382 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378A GLY 2.9 18.3 + - - +
379A VAL* 3.4 12.8 - - - +
381A TYR* 1.3 80.4 - - + +
383A ALA* 1.3 58.3 + - - +
385A HIS* 3.3 5.2 + - - +
386A MET* 2.9 39.5 + - + +
429B ILE* 4.6 2.9 - - + -
430B VAL* 4.1 17.9 - - + -
433B ILE* 3.8 40.2 - - + -
606B OCT 4.0 26.9 - - + -
423E ILE* 3.7 26.0 - - + -
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Residues in contact with ALA 383 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A VAL 3.0 13.3 + - - +
380A LYS* 3.6 9.4 - - + +
382A ILE* 1.3 78.3 - - - +
384A GLU* 1.3 61.9 + - - +
386A MET* 3.3 6.8 + - - +
387A LYS* 2.9 25.3 + - - +
419E ALA* 3.8 27.1 - - + +
422E PHE* 3.8 18.9 - - + -
423E ILE* 4.5 3.3 - - - +
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Residues in contact with GLU 384 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A LYS 2.9 13.6 + - - +
381A TYR* 3.4 18.2 - - + +
383A ALA* 1.3 75.6 - - - +
385A HIS* 1.3 63.2 + - - +
387A LYS* 3.2 8.9 + - - +
388A SER* 3.0 41.2 + - - +
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Residues in contact with HIS 385 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A TYR* 2.9 24.9 + - + +
382A ILE* 3.9 5.6 - - - +
384A GLU* 1.3 77.7 - - - +
386A MET* 1.3 58.8 + - + +
388A SER* 3.4 7.7 + - - -
389A ASP* 2.8 68.5 + - - +
433B ILE* 5.7 2.7 - - + -
437B ASN* 3.1 46.2 + - + +
440B ASP* 5.5 2.4 + - - -
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Residues in contact with MET 386 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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382A ILE* 2.9 25.3 + - + +
383A ALA* 3.6 5.6 - - - +
385A HIS* 1.3 78.3 - - + +
387A LYS* 1.3 55.8 + - - +
389A ASP* 3.3 7.3 + - - +
390A GLU* 2.9 38.0 + - + +
606B OCT 5.7 8.1 - - + -
422E PHE* 4.6 6.7 - - + -
423E ILE* 3.7 50.3 - - + +
426E SER* 4.1 18.6 - - - +
427E THR* 4.1 13.2 - - - +
430E GLN* 4.9 8.5 - - - +
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Residues in contact with LYS 387 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383A ALA 2.9 17.2 + - - +
384A GLU* 3.2 9.4 + - - +
386A MET* 1.3 76.5 - - - +
388A SER* 1.3 64.8 + - - +
390A GLU* 3.2 8.1 + - - +
391A GLU* 3.0 42.0 + - + +
422E PHE* 3.7 38.3 - - + -
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Residues in contact with SER 388 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A GLU* 3.0 32.6 + - - +
385A HIS* 3.9 8.9 - - - -
387A LYS* 1.3 76.2 - - - +
389A ASP* 1.3 60.6 + - - +
391A GLU* 3.3 7.9 + - - +
392A SER* 3.0 29.5 + - - -
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Residues in contact with ASP 389 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385A HIS* 2.8 61.7 + - - +
386A MET* 3.7 7.3 + - - +
388A SER* 1.3 77.0 - - - +
390A GLU* 1.3 56.3 + - + +
392A SER* 3.4 5.9 + - - -
393A SER* 2.5 41.2 + - - +
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Residues in contact with GLU 390 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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386A MET* 2.9 22.4 + - + +
387A LYS* 3.7 7.0 - - + +
389A ASP* 1.3 76.3 - - + +
391A GLU* 1.3 61.3 + - + +
393A SER* 3.6 5.8 - - - -
394A ASN* 2.9 42.2 + - - +
422E PHE* 3.8 19.8 - - - -
426E SER* 2.5 39.6 + - - -
429E GLU* 4.2 8.9 - - - +
430E GLN* 5.8 3.5 - - + +
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Residues in contact with GLU 391 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387A LYS* 3.0 34.9 + - + +
388A SER* 3.6 9.6 - - - +
389A ASP 3.2 0.2 - - - -
390A GLU* 1.3 77.6 - - - +
392A SER* 1.3 64.2 + - - +
394A ASN* 3.1 16.0 + - - +
395A ALA* 3.0 20.6 + - - +
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Residues in contact with SER 392 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302A SER* 5.4 0.3 + - - -
303A PRO* 3.2 26.6 - - - +
304A SER* 4.9 5.3 + - - -
388A SER 3.0 16.4 + - - -
389A ASP* 3.9 6.5 - - - -
391A GLU* 1.3 75.1 - - - +
393A SER* 1.3 56.9 + - - +
395A ALA* 3.3 4.8 + - - +
396A ALA* 2.9 27.7 + - - +
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Residues in contact with SER 393 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389A ASP* 2.5 25.9 + - - +
390A GLU* 3.6 7.4 - - - -
391A GLU 3.1 0.2 - - - -
392A SER* 1.3 75.8 - - - +
394A ASN* 1.3 63.1 + - - +
396A ALA* 3.3 6.5 + - - +
397A GLU* 2.9 37.0 + - - +
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Residues in contact with ASN 394 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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390A GLU* 2.9 23.2 + - - +
391A GLU* 3.5 16.8 - - - +
393A SER* 1.3 78.6 - - - +
395A ALA* 1.3 62.8 + - - +
397A GLU* 3.3 9.3 + - - +
398A GLU* 2.9 32.1 + - - +
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Residues in contact with ALA 395 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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303A PRO* 3.6 26.2 - - + -
308A MET* 5.1 0.2 - - - +
391A GLU 3.0 12.4 + - - +
392A SER* 3.4 9.2 - - - +
393A SER 3.2 0.2 - - - -
394A ASN* 1.3 77.4 - - - +
396A ALA* 1.3 62.1 + - - +
398A GLU* 3.1 18.4 + - - +
399A TRP* 3.0 28.5 + - + +
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Residues in contact with ALA 396 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A HIS 5.6 0.4 - - - +
301A ARG 5.0 1.3 - - - +
302A SER* 5.9 0.9 - - - -
303A PRO* 4.4 10.2 - - + +
392A SER* 2.9 16.9 + - - +
393A SER* 3.3 7.8 + - - +
395A ALA* 1.3 76.5 - - - +
397A GLU* 1.3 57.5 + - + +
399A TRP* 3.2 12.3 + - - +
400A LYS* 2.9 50.5 + - - +
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Residues in contact with GLU 397 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A SER* 2.9 24.6 + - - +
394A ASN* 3.6 9.6 - - - +
395A ALA 3.2 0.2 - - - -
396A ALA* 1.3 75.0 - - - +
398A GLU* 1.3 58.9 + - - +
400A LYS* 3.3 22.6 + - - +
401A TYR* 2.9 19.4 + - - +
311E THR* 4.9 5.6 + - - +
313E ASN* 2.5 65.9 + - + +
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Residues in contact with GLU 398 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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308A MET* 3.6 15.3 - - + +
313A ARG* 2.7 44.3 + - - +
317A ILE* 4.4 9.9 - - + +
394A ASN* 2.9 24.9 + - + +
395A ALA* 3.1 14.9 + - - +
397A GLU* 1.3 76.2 - - + +
399A TRP* 1.3 62.7 + - - +
401A TYR* 3.2 6.9 + - - +
402A VAL* 3.0 26.9 + - - +
313E ASN* 5.4 0.7 - - - -
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Residues in contact with TRP 399 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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298A THR* 3.4 46.1 - - + +
299A HIS 4.1 4.3 - - - +
301A ARG* 2.8 64.0 + - + +
302A SER 4.7 2.4 - - - -
303A PRO* 4.8 2.3 - - + +
306A HIS* 4.2 17.3 + - + -
307A THR 4.2 4.9 - - - -
308A MET* 3.7 43.8 - - + +
309A PRO* 4.4 9.9 - - + -
312A VAL* 4.1 19.1 - - + -
395A ALA* 3.0 26.3 + - + +
396A ALA* 3.5 8.1 - - - +
398A GLU* 1.3 75.7 - - - +
400A LYS* 1.3 57.4 + - - +
402A VAL* 3.3 5.8 + - + +
403A ALA* 2.9 24.1 + - - +
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Residues in contact with LYS 400 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238A ASP* 4.9 3.6 - - - +
299A HIS* 3.5 63.0 + - + +
300A HIS* 5.2 3.6 - - - +
396A ALA* 2.9 34.0 + - - +
397A GLU* 3.6 28.9 - - - +
399A TRP* 1.3 76.3 - - - +
401A TYR* 1.3 57.4 + - - +
403A ALA* 3.2 4.1 + - - +
404A MET* 2.9 28.3 + - - +
313E ASN* 4.5 4.5 - - - +
314E THR* 5.1 4.8 - - + +
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Residues in contact with TYR 401 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A PHE 3.8 21.1 - - - -
317A ILE* 4.1 20.6 - - + -
321A PRO* 3.4 22.4 - - + +
329A MET* 3.9 2.6 - - - +
330A LYS* 2.5 38.2 + - + -
331A ARG* 4.2 3.8 + - - -
397A GLU 2.9 16.8 + - - +
398A GLU* 3.6 6.3 - - - +
400A LYS* 1.3 73.8 - - - +
402A VAL* 1.3 67.5 + - - +
404A MET* 3.1 15.4 + - + +
405A VAL* 2.9 37.4 + - + +
313E ASN* 3.3 34.0 - - - +
314E THR* 4.2 17.7 - - - -
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Residues in contact with VAL 402 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298A THR* 3.7 13.0 - - + -
308A MET* 3.7 18.6 - - + -
312A VAL* 3.8 22.9 - - + -
316A PHE* 3.9 25.1 - - + -
317A ILE* 4.0 13.7 - - + -
398A GLU 3.0 16.1 + - - +
399A TRP* 3.3 10.3 + - + +
401A TYR* 1.3 76.1 - - - +
403A ALA* 1.3 63.6 + - - +
405A VAL* 3.2 3.7 + - - +
406A ILE* 3.0 47.4 + - + +
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Residues in contact with ALA 403 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237A THR* 5.3 0.4 - - - +
295A VAL* 3.8 35.3 - - + +
298A THR* 4.0 11.9 - - + +
299A HIS* 4.1 17.7 - - + +
399A TRP 2.9 12.7 + - - +
400A LYS* 3.5 8.7 - - - +
402A VAL* 1.3 78.0 - - - +
404A MET* 1.3 56.9 + - - +
406A ILE* 3.4 6.1 + - - +
407A ASP* 2.9 29.3 + - - +
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Residues in contact with MET 404 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236A PRO* 6.5 1.3 - - + -
329A MET* 3.1 40.4 - - + +
400A LYS 2.9 14.0 + - - +
401A TYR* 3.1 16.8 + - + +
403A ALA* 1.3 77.6 - - - +
405A VAL* 1.3 64.2 + - + +
407A ASP* 3.2 6.1 + - + +
408A HIS* 2.9 73.8 + - + +
306E ASN* 6.2 1.3 - - - +
314E THR* 4.1 27.4 - - + +
315E HIS* 4.1 13.0 - - + -
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Residues in contact with VAL 405 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A PHE* 3.6 36.6 - - + +
320A ILE* 3.3 33.4 - - + -
321A PRO* 4.2 0.9 - - + -
324A MET* 4.0 6.2 - - - +
329A MET* 4.1 18.2 - - + -
401A TYR* 2.9 29.6 + - + +
402A VAL 3.2 6.3 + - - +
404A MET* 1.3 74.3 - - + +
406A ILE* 1.3 67.7 + - - +
408A HIS* 3.2 6.6 + - - +
409A ILE* 3.0 24.6 + - + +
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Residues in contact with ILE 406 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A ILE* 5.1 2.0 - - + -
294A VAL* 6.1 5.4 - - + -
295A VAL* 4.0 12.6 - - + -
298A THR* 4.5 11.9 - - + +
316A PHE* 3.4 31.6 - - + -
402A VAL* 3.0 35.3 + - + +
403A ALA* 3.7 7.6 - - - +
405A VAL* 1.3 74.8 - - - +
407A ASP* 1.3 58.3 + - - +
409A ILE* 3.3 8.9 + - + +
410A LEU* 2.9 56.8 + - + +
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Residues in contact with ASP 407 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A PHE* 2.7 60.7 - - - +
234A TYR 4.7 0.3 - - - -
235A LEU 3.2 7.4 - - - +
236A PRO* 4.8 2.3 - - - +
242A LYS* 2.4 31.1 + - - -
295A VAL* 4.5 8.2 - - + +
403A ALA 2.9 18.1 + - - +
404A MET* 3.4 10.1 - - + +
405A VAL 3.2 0.2 - - - -
406A ILE* 1.3 76.9 - - - +
408A HIS* 1.3 59.7 + - + +
410A LEU* 3.4 5.1 + - - -
411A LEU* 2.9 24.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 408 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A PHE 4.7 2.5 - - - -
234A TYR* 4.4 17.1 - + - -
324A MET* 3.1 22.6 - - + +
327A SER* 3.3 30.3 + - - -
404A MET* 2.9 51.9 + - + +
405A VAL 3.7 3.1 - - - +
407A ASP* 1.3 78.4 - - + +
409A ILE* 1.3 67.7 + - - +
411A LEU* 3.1 11.3 + - + +
412A CYS* 3.0 29.1 + - - -
511A POV 3.8 26.5 + - - -
306E ASN* 5.0 4.2 + - - -
315E HIS* 4.2 9.4 + - - -
----------------------------------------------------------
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Residues in contact with ILE 409 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A PHE* 4.3 11.2 - - + -
320A ILE* 3.6 44.2 - - + -
324A MET* 4.6 7.2 - - + -
405A VAL* 3.0 19.9 + - + +
406A ILE* 3.6 9.6 - - + +
408A HIS* 1.3 77.6 - - - +
410A LEU* 1.3 66.3 + - + +
412A CYS* 3.2 7.7 + - - +
413A VAL* 2.9 39.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 410 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A PHE* 3.6 27.1 - - + -
291A ILE* 3.1 47.3 - - + -
295A VAL* 4.1 4.7 - - + -
406A ILE* 2.9 38.8 + - + +
407A ASP 3.9 0.2 - - - +
409A ILE* 1.3 79.8 - - + +
411A LEU* 1.3 66.7 + - - +
413A VAL* 4.1 8.5 - - + -
414A PHE* 2.8 36.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 411 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230A GLY 3.2 23.1 - - - +
231A LEU* 4.4 1.8 - - - -
233A PHE* 3.6 11.5 - - + +
234A TYR* 3.9 37.9 - - + +
407A ASP 2.9 15.1 + - - +
408A HIS* 3.3 14.1 - - + +
410A LEU* 1.3 76.4 - - - +
412A CYS* 1.3 63.0 + - - +
414A PHE* 3.9 1.0 - - - +
415A MET* 3.0 47.0 + - + +
511A POV 3.4 47.6 - - + +
----------------------------------------------------------
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Residues in contact with CYS 412 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A MET* 6.0 2.9 - - - -
326A PHE* 5.8 7.6 - - - -
408A HIS* 3.0 23.0 + - - -
409A ILE* 3.5 8.1 - - - +
411A LEU* 1.3 78.5 - - - +
413A VAL* 1.3 65.3 + - + +
415A MET* 3.3 1.4 + - - +
416A LEU* 3.0 25.5 + - - +
511A POV 3.8 34.3 - - + +
----------------------------------------------------------
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Residues in contact with VAL 413 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A ILE* 2.9 33.4 + - + +
410A LEU* 3.3 10.5 + - + +
412A CYS* 1.3 76.2 - - + +
414A PHE* 1.3 68.6 + - + +
416A LEU* 3.4 6.2 + - - +
417A ILE* 2.9 47.0 + - + +
----------------------------------------------------------
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Residues in contact with PHE 414 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229A THR* 4.2 5.4 - - + -
230A GLY* 3.7 15.0 - - - -
233A PHE* 3.7 20.9 - + + -
284A PHE* 3.0 64.3 - + + -
287A SER* 4.3 6.3 - - - -
288A SER* 3.7 13.2 - - - -
291A ILE* 3.6 32.3 - - + -
410A LEU* 2.8 37.3 + - + +
411A LEU 4.0 0.9 - - - +
413A VAL* 1.3 85.9 - - + +
415A MET* 1.3 62.0 + - - +
417A ILE* 4.2 4.0 - - + -
418A CYS* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with MET 415 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227A PHE* 3.6 38.8 - - + +
230A GLY* 4.0 25.5 - - - +
231A LEU* 4.0 4.5 - - + +
411A LEU* 3.0 34.0 + - + +
414A PHE* 1.3 77.2 - - - +
416A LEU* 1.3 62.2 + - - +
418A CYS* 3.3 8.1 + - - +
419A ILE* 3.0 28.5 + - + +
511A POV 3.6 71.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU 416 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412A CYS 3.0 17.7 + - - +
413A VAL* 3.7 6.5 - - - +
415A MET* 1.3 76.9 - - - +
417A ILE* 1.3 62.0 + - + +
419A ILE* 3.3 10.6 + - + +
420A ILE* 2.9 61.4 + - + +
511A POV 5.5 0.2 - - - +
----------------------------------------------------------
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Residues in contact with ILE 417 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280A PHE* 3.8 16.3 - - + -
284A PHE* 3.2 34.5 - - + -
413A VAL* 2.9 36.9 + - + +
414A PHE* 5.0 4.5 - - + -
415A MET 3.3 0.2 - - - -
416A LEU* 1.3 77.5 - - + +
418A CYS* 1.3 59.5 + - - +
420A ILE* 3.4 16.8 - - + +
421A GLY* 2.8 27.7 + - - -
----------------------------------------------------------
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Residues in contact with CYS 418 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223A LEU* 4.8 6.5 - - - -
226A SER* 3.7 25.8 - - - +
227A PHE* 4.2 17.9 - - - -
230A GLY* 6.4 0.2 - - - -
277A TYR* 5.4 1.8 - - - -
280A PHE* 4.4 11.6 - - - -
284A PHE* 4.0 12.3 - - + -
414A PHE 2.9 17.6 + - - +
415A MET* 3.3 9.4 + - - +
417A ILE* 1.3 76.9 - - - +
419A ILE* 1.3 64.7 + - - +
422A THR* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 419 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415A MET* 3.0 20.5 + - + +
416A LEU* 3.6 11.4 - - + +
417A ILE 3.2 0.2 - - - -
418A CYS* 1.3 79.7 - - + +
420A ILE* 1.3 70.1 + - + +
421A GLY 3.1 0.2 + - - -
422A THR* 3.3 6.9 + - + +
423A VAL* 3.0 37.9 + - + +
511A POV 4.2 23.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 420 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416A LEU* 2.9 39.6 + - + +
417A ILE* 3.4 21.5 - - + +
419A ILE* 1.3 81.4 - - + +
421A GLY* 1.3 60.1 + - - +
423A VAL* 3.8 7.3 - - - +
424A SER* 2.9 30.8 + - - -
----------------------------------------------------------
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Residues in contact with GLY 421 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A TYR* 4.4 7.0 - - - -
280A PHE* 4.0 18.2 - - - -
417A ILE 2.8 17.0 + - - -
418A CYS 3.8 0.4 - - - -
419A ILE 3.1 0.2 - - - -
420A ILE* 1.3 77.1 - - - +
422A THR* 1.3 64.3 + - - +
423A VAL 3.1 1.3 - - - -
424A SER* 4.6 2.7 - - - -
425A VAL* 3.3 32.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 422 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223A LEU* 2.8 35.3 - - + +
277A TYR* 3.4 17.2 + - - -
280A PHE* 4.9 0.4 - - - -
418A CYS* 2.9 20.0 + - - +
419A ILE* 3.3 14.8 - - + +
421A GLY* 1.3 75.5 - - - +
423A VAL* 1.3 66.7 + - + +
426A PHE* 3.4 29.0 - - - +
----------------------------------------------------------
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Residues in contact with VAL 423 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419A ILE* 3.0 31.0 + - + +
420A ILE* 4.0 6.1 - - - +
422A THR* 1.3 86.2 - - + +
424A SER* 1.3 62.2 + - - +
426A PHE 3.2 1.7 + - - -
427A ALA* 2.8 45.4 + - + +
----------------------------------------------------------
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Residues in contact with SER 424 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420A ILE 2.9 21.8 + - - -
421A GLY* 4.2 3.4 - - - -
423A VAL* 1.3 78.5 - - - +
425A VAL* 1.3 67.2 + - - +
426A PHE 3.0 1.0 + - - -
427A ALA* 3.2 14.0 + - - +
428A GLY 4.1 4.3 + - - -
----------------------------------------------------------
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Residues in contact with VAL 425 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A LEU* 3.2 59.4 - - + +
276A LYS* 4.9 11.0 - - + +
277A TYR* 4.1 17.5 - - + +
280A PHE* 5.5 6.3 - - + -
421A GLY* 3.3 18.6 + - - +
424A SER* 1.3 81.6 - - - +
426A PHE* 1.3 74.6 + - + +
427A ALA 3.9 0.5 + - - -
428A GLY 5.3 0.5 + - - -
429A ARG* 5.1 2.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il