Contacts of the helix formed by residues 399 - 460 (chain C) in PDB entry 6UWZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 399 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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398C PRO* 1.3 78.4 - - + +
400C ASP* 1.3 68.1 + - - +
402C LYS* 2.9 17.4 + - - +
403C GLU* 2.8 47.6 + - - +
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Residues in contact with ASP 400 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398C PRO 4.9 0.2 - - - -
399C GLN* 1.3 78.2 - - - +
401C LEU* 1.3 65.2 + - - +
403C GLU* 3.1 25.4 + - - +
404C ALA* 2.9 23.0 + - - +
373D LYS* 4.0 24.4 + - - +
376D ILE* 3.7 27.4 - - + +
380D LYS* 4.6 3.5 + - - -
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Residues in contact with LEU 401 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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419B ILE* 4.5 28.5 - - + -
398C PRO* 3.5 21.6 + - + +
399C GLN 3.2 0.2 - - - -
400C ASP* 1.3 78.2 - - - +
402C LYS* 1.3 58.4 + - - +
404C ALA* 3.3 6.3 + - + +
405C VAL* 2.9 46.5 + - + +
372D VAL* 6.5 0.7 - - + -
376D ILE* 4.0 13.1 - - + +
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Residues in contact with LYS 402 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418B GLU* 2.7 53.8 + - - +
398C PRO* 2.7 23.7 + - - +
399C GLN* 3.2 20.0 - - - +
401C LEU* 1.3 75.1 - - - +
403C GLU* 1.3 61.9 + - + +
405C VAL* 3.3 11.0 + - + +
406C GLU* 2.9 30.5 + - + +
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Residues in contact with GLU 403 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399C GLN* 2.8 47.0 + - - +
400C ASP* 3.1 22.0 + - - +
402C LYS* 1.3 73.4 - - + +
404C ALA* 1.3 56.8 + - - +
406C GLU* 3.3 10.0 + - - +
407C ALA* 2.9 29.6 + - - +
380D LYS* 2.6 47.0 + - + +
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Residues in contact with ALA 404 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400C ASP 2.9 12.2 + - - +
401C LEU* 3.7 12.8 - - + +
402C LYS 3.3 0.2 - - - -
403C GLU* 1.3 76.6 - - - +
405C VAL* 1.3 59.6 + - + +
407C ALA* 3.2 4.6 + - - +
408C ILE* 2.9 30.1 + - - +
376D ILE* 3.9 23.8 - - + -
379D VAL* 4.0 22.9 - - + +
380D LYS* 4.6 2.8 - - - +
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Residues in contact with VAL 405 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418B GLU* 3.9 32.1 - - + +
419B ILE* 5.2 5.2 - - + -
421B SER* 5.1 4.0 - - - -
422B GLY* 4.3 17.0 - - - +
401C LEU* 2.9 36.9 + - + +
402C LYS* 3.8 12.6 - - + +
404C ALA* 1.3 76.8 - - + +
406C GLU* 1.3 58.3 + - - +
408C ILE* 2.9 24.5 - - + +
409C LYS* 2.9 22.5 + - + +
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Residues in contact with GLU 406 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402C LYS* 2.9 25.6 + - + +
403C GLU* 3.7 8.5 - - - +
405C VAL* 1.3 77.5 - - - +
407C ALA* 1.3 59.6 + - - +
409C LYS* 3.3 19.8 + - + +
410C TYR* 2.9 29.5 + - + +
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Residues in contact with ALA 407 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403C GLU 2.9 16.9 + - - +
404C ALA* 3.6 5.8 - - - +
406C GLU* 1.3 76.8 - - - +
408C ILE* 1.3 57.3 + - - +
410C TYR* 3.2 6.6 + - - +
411C ILE* 2.9 32.7 + - - +
379D VAL* 4.1 15.0 - - + +
380D LYS* 4.3 11.9 - - + -
383D ALA* 3.6 25.3 - - + +
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Residues in contact with ILE 408 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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422B GLY* 3.7 23.1 - - - +
425B SER* 4.2 5.6 - - - -
426B THR* 3.6 32.8 - - - +
429B ILE* 3.8 14.8 - - + -
606B OCT 4.3 16.6 - - + -
404C ALA 2.9 14.5 + - - +
405C VAL* 2.9 31.0 - - + +
407C ALA* 1.3 77.1 - - - +
409C LYS* 1.3 56.3 + - - +
411C ILE* 3.2 10.8 + - + +
412C ALA* 2.9 28.1 + - - +
379D VAL* 4.5 9.6 - - + +
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Residues in contact with LYS 409 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421B SER* 5.8 7.9 - - - -
425B SER* 4.2 17.0 - - - +
405C VAL* 2.9 26.6 + - + +
406C GLU* 3.5 17.8 - - + +
407C ALA 3.2 0.2 - - - -
408C ILE* 1.3 79.3 - - + +
410C TYR* 1.3 62.1 + - - +
412C ALA* 3.2 2.0 + - + +
413C GLU* 2.9 52.0 + - + +
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Residues in contact with TYR 410 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406C GLU* 2.9 15.5 + - + +
407C ALA* 3.2 9.2 + - - +
409C LYS* 1.3 75.8 - - - +
411C ILE* 1.3 66.0 + - - +
413C GLU* 3.3 12.8 + - + +
414C GLN* 2.9 51.3 + - + +
383D ALA* 4.0 21.3 - - + -
386D MET* 4.0 5.6 - - + -
387D LYS* 3.1 51.4 - - + +
390D GLU* 2.4 26.0 + - - -
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Residues in contact with ILE 411 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429B ILE* 3.7 18.2 - - + -
606B OCT 4.7 20.4 - - + -
407C ALA 2.9 19.4 + - - +
408C ILE* 3.5 15.3 - - + +
409C LYS 3.2 0.2 - - - -
410C TYR* 1.3 76.7 - - - +
412C ALA* 1.3 62.9 + - - +
414C GLN* 3.3 1.7 + - - +
415C LEU* 2.9 33.0 + - + +
379D VAL* 4.4 12.1 - - + -
382D ILE* 3.6 26.0 - - + -
383D ALA* 4.2 14.8 - - + +
386D MET* 3.9 31.4 - - + -
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Residues in contact with ALA 412 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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425B SER* 4.2 24.5 - - - +
428B TYR* 4.5 13.7 - - + -
429B ILE* 4.2 19.1 - - + -
408C ILE 2.9 15.4 + - - +
409C LYS* 3.2 4.5 + - - +
411C ILE* 1.3 77.0 - - - +
413C GLU* 1.3 59.2 + - + +
415C LEU* 3.2 6.2 + - - +
416C GLU* 3.0 31.1 + - - +
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Residues in contact with GLU 413 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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409C LYS* 2.9 43.5 + - + +
410C TYR* 3.9 11.6 - - + +
412C ALA* 1.3 73.9 - - + +
414C GLN* 1.3 68.8 + - + +
416C GLU* 3.3 22.9 - - - +
417C SER* 2.9 25.9 + - - -
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Residues in contact with GLN 414 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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410C TYR* 2.9 51.8 + - + +
411C ILE 3.6 4.0 - - - +
413C GLU* 1.3 77.2 - - - +
415C LEU* 1.3 58.4 + - + +
417C SER* 3.4 11.0 + - - -
418C ALA* 2.9 30.0 + - - +
386D MET* 3.7 18.5 - - + +
390D GLU* 2.8 42.6 + - - +
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Residues in contact with LEU 415 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429B ILE* 4.2 29.4 - - + +
432B GLN* 3.3 31.4 - - + +
433B ILE* 5.2 6.1 - - + -
606B OCT 4.8 11.4 - - + -
411C ILE* 2.9 36.0 + - + +
412C ALA* 3.2 5.1 + - - +
414C GLN* 1.3 78.6 - - + +
416C GLU* 1.3 56.8 + - - +
418C ALA* 3.3 6.6 + - - +
419C SER* 2.9 31.4 + - - -
386D MET* 4.3 15.0 - - + -
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Residues in contact with GLU 416 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B TYR* 3.8 29.1 - - + +
432B GLN* 3.8 9.3 - - - +
412C ALA* 3.0 15.6 + - - +
413C GLU* 3.3 28.6 - - - +
415C LEU* 1.3 73.2 - - - +
417C SER* 1.3 71.9 + - - +
419C SER* 3.2 5.3 + - - -
420C GLU* 3.0 30.2 + - - +
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Residues in contact with SER 417 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413C GLU 2.9 18.3 + - - -
414C GLN* 3.6 13.9 + - - -
416C GLU* 1.3 79.7 - - - +
418C ALA* 1.3 56.6 + - - +
420C GLU* 3.2 13.3 + - - +
421C PHE* 2.9 26.9 + - - +
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Residues in contact with ALA 418 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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414C GLN 2.9 18.2 + - - +
415C LEU* 3.7 6.3 - - - +
416C GLU 3.2 0.2 - - - -
417C SER* 1.3 72.6 - - - +
419C SER* 1.3 62.1 + - - +
421C PHE* 3.6 7.4 - - - +
422C ASP* 2.8 42.4 + - - +
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Residues in contact with SER 419 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B TYR* 5.8 0.7 - - - -
432B GLN* 3.5 22.0 + - - +
415C LEU 2.9 16.8 + - - -
416C GLU* 3.2 12.3 + - - -
418C ALA* 1.3 77.6 - - - +
420C GLU* 1.3 57.5 + - - +
422C ASP* 3.3 8.3 + - - +
423C ASP* 2.9 37.6 + - - +
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Residues in contact with GLU 420 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416C GLU* 3.0 18.7 + - - +
417C SER* 3.6 12.4 - - - +
419C SER* 1.3 74.6 - - - +
421C PHE* 1.3 66.2 + - - +
423C ASP* 3.0 8.8 + - - +
424C LEU* 3.0 34.2 + - + +
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Residues in contact with PHE 421 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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308C SER* 4.0 7.0 - - - -
309C PRO* 3.6 33.4 - - + +
310C ASN* 3.1 47.6 - - + -
417C SER* 2.9 13.4 + - - +
418C ALA* 3.6 11.9 - - - +
420C GLU* 1.3 76.8 - - - +
422C ASP* 1.3 61.4 + - - +
424C LEU* 3.3 7.1 + - - +
425C LYS* 2.9 61.7 + - - +
397D GLU* 5.0 2.0 - - - -
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Residues in contact with ASP 422 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418C ALA* 2.8 29.8 + - - +
419C SER* 3.6 7.2 - - - +
421C PHE* 1.3 76.2 - - - +
423C ASP* 1.3 62.5 + - - +
425C LYS* 3.5 24.0 + - - +
426C LYS* 2.8 46.6 + - + +
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Residues in contact with ASP 423 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419C SER* 2.9 21.6 + - - +
420C GLU* 3.0 12.7 + - - +
422C ASP* 1.3 78.1 - - - +
424C LEU* 1.3 62.7 + - + +
426C LYS* 3.2 9.0 + - - +
427C ASP* 3.0 34.9 + - - +
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Residues in contact with LEU 424 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309C PRO* 3.4 35.2 - - + -
314C MET* 6.4 2.0 - - + -
319C ARG* 5.8 4.7 - - - +
420C GLU* 3.0 32.2 + - + +
421C PHE* 3.7 2.7 - - - +
422C ASP 3.2 0.2 - - - -
423C ASP* 1.3 80.4 - - + +
425C LYS* 1.3 66.6 + - - +
427C ASP* 3.1 14.9 + - + +
428C TRP* 3.0 31.0 + - + +
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Residues in contact with LYS 425 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305C HIS 6.2 0.2 - - - +
307C ARG 4.3 10.9 - - - +
308C SER* 4.2 21.8 - - - -
309C PRO* 4.7 1.0 - - - +
421C PHE* 2.9 41.1 + - + +
422C ASP* 3.5 26.6 + - - +
424C LEU* 1.3 76.5 - - - +
426C LYS* 1.3 60.9 + - + +
428C TRP* 3.2 5.0 + - - +
429C GLN* 2.9 46.3 + - - +
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Residues in contact with LYS 426 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316B THR* 5.1 4.3 - - - +
318B SER* 3.8 23.3 - - - +
319B THR* 5.6 4.8 - - + +
439B TYR* 3.4 28.4 - - - -
334C ARG* 4.8 5.7 + - - +
422C ASP* 2.8 41.0 + - + +
423C ASP* 3.5 8.5 - - - +
425C LYS* 1.3 76.4 - - - +
427C ASP* 1.3 63.2 + - - +
429C GLN* 3.3 29.8 + - + +
430C TYR* 2.8 30.5 + - - +
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Residues in contact with ASP 427 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314C MET* 3.9 17.5 - - + -
319C ARG* 3.6 24.9 + - - +
323C ILE* 4.3 3.9 - - + +
334C ARG* 3.4 25.9 + - - +
423C ASP* 3.0 20.7 + - - +
424C LEU* 3.1 16.7 + - - +
426C LYS* 1.3 78.6 - - - +
428C TRP* 1.3 62.2 + - - +
430C TYR* 3.3 7.4 + - - +
431C VAL* 2.9 27.0 + - - +
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Residues in contact with TRP 428 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C LEU* 3.4 43.3 - - + +
305C HIS 5.0 0.7 - - - +
307C ARG* 3.6 67.7 - - + +
308C SER* 4.1 14.9 - - - +
309C PRO* 5.0 1.7 - - + +
312C HIS* 4.1 14.5 + - + +
313C THR 4.3 0.9 - - - -
314C MET* 3.6 49.2 - - + +
315C PRO* 4.3 2.5 - - + -
318C ILE* 4.3 25.1 - - + -
424C LEU* 3.0 24.7 + - + +
425C LYS 3.2 6.9 + - - +
427C ASP* 1.3 77.2 - - - +
429C GLN* 1.3 57.7 + - - +
431C VAL* 3.2 9.4 + - + +
432C ALA* 2.9 23.4 + - - +
328D THR* 4.5 0.9 - - + -
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Residues in contact with GLN 429 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B THR* 5.6 6.8 - - + +
244C ASP* 4.9 4.1 + - - +
305C HIS* 3.5 57.4 + - + +
425C LYS* 2.9 38.8 + - - +
426C LYS* 3.8 31.5 + - + +
428C TRP* 1.3 76.5 - - - +
430C TYR* 1.3 57.6 + - - +
432C ALA* 3.2 6.1 + - - +
433C MET* 2.9 27.2 + - - +
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Residues in contact with TYR 430 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B THR* 4.4 14.5 - - + +
322C PHE 4.3 1.8 - - - -
323C ILE* 4.0 20.6 - - + -
327C PRO* 3.3 26.0 - - + +
332C ILE* 3.3 31.6 - - + +
333C GLN* 3.4 2.1 + - - -
334C ARG* 3.3 69.2 + - + +
426C LYS 2.8 17.9 + - - +
427C ASP* 3.6 5.2 - - - +
428C TRP 3.2 0.2 - - - -
429C GLN* 1.3 75.5 - - - +
431C VAL* 1.3 63.7 + - - +
433C MET* 3.2 15.6 + - - +
434C VAL* 2.9 42.2 + - + +
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Residues in contact with VAL 431 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C LEU* 4.2 24.7 - - + -
314C MET* 3.8 12.8 - - + -
318C ILE* 4.0 24.5 - - + -
322C PHE* 4.0 25.1 - - + -
323C ILE* 3.7 25.8 - - + -
427C ASP 2.9 17.9 + - - +
428C TRP* 3.3 12.6 - - + +
430C TYR* 1.3 75.8 - - - +
432C ALA* 1.3 59.2 + - - +
434C VAL* 3.3 1.9 + - - +
435C ALA* 2.9 27.7 + - - +
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Residues in contact with ALA 432 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243C PRO* 5.1 1.8 - - + -
301C VAL* 3.6 33.7 - - + +
304C LEU* 4.1 11.2 - - + -
305C HIS* 3.9 20.9 - - + +
428C TRP 2.9 12.7 + - - +
429C GLN 3.3 8.7 - - - +
430C TYR 3.1 0.2 - - - -
431C VAL* 1.3 78.0 - - - +
433C MET* 1.3 57.1 + - - +
435C ALA* 3.4 2.2 + - - +
436C ASP* 2.8 30.6 + - - +
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Residues in contact with MET 433 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B THR* 3.4 35.9 - - + +
320B HIS* 3.6 25.6 - - + +
243C PRO* 6.3 1.8 - - - +
332C ILE* 3.8 34.5 - - + -
429C GLN 2.9 13.5 + - - +
430C TYR* 3.2 18.1 + - - +
432C ALA* 1.3 75.4 - - - +
434C VAL* 1.3 57.9 + - - +
436C ASP* 3.2 8.3 + - - +
437C ARG* 2.9 33.3 + - + +
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Residues in contact with VAL 434 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322C PHE* 3.5 37.7 - - + +
326C LEU* 3.9 23.1 - - + -
327C PRO* 4.2 6.5 - - + -
330C LEU* 3.6 11.1 - - + +
332C ILE* 3.9 21.1 - - + -
430C TYR* 2.9 39.7 + - + +
431C VAL 3.7 3.4 - - - +
433C MET* 1.3 73.9 - - - +
435C ALA* 1.3 65.8 + - - +
437C ARG 3.2 1.0 + - - -
438C LEU* 2.9 22.9 + - - +
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Residues in contact with ALA 435 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301C VAL* 4.6 2.5 - - + -
304C LEU* 4.4 17.0 - - + -
322C PHE* 3.8 23.9 - - + -
431C VAL 2.9 17.4 + - - +
432C ALA 3.8 3.1 - - - +
434C VAL* 1.3 76.0 - - - +
436C ASP* 1.3 58.4 + - - +
438C LEU* 3.4 2.8 + - - +
439C PHE* 2.9 56.3 + - + -
----------------------------------------------------------
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Residues in contact with ASP 436 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239C PHE* 2.8 59.8 - - - +
241C LEU 3.1 8.8 - - - +
243C PRO* 4.9 1.9 - - - +
248C LYS* 3.1 23.4 + - - -
301C VAL* 4.0 15.7 - - + +
432C ALA 2.8 17.9 + - - +
433C MET* 3.4 9.1 - - - +
434C VAL 3.2 0.2 - - - -
435C ALA* 1.3 78.4 - - - +
437C ARG* 1.3 57.5 + - - +
439C PHE* 3.3 2.6 + - - +
440C LEU* 2.9 23.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 437 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311B ASN* 4.8 6.1 - - - +
320B HIS* 5.6 5.9 + - - -
239C PHE 5.1 2.2 + - - -
240C TYR* 3.8 16.1 - - - -
330C LEU* 4.1 19.1 + - + +
331C TRP* 4.8 3.4 + - - +
332C ILE* 4.1 18.3 - - + +
433C MET* 2.9 21.0 + - + +
434C VAL 3.2 3.3 + - - +
436C ASP* 1.3 72.8 - - - +
438C LEU* 1.3 65.8 + - - +
440C LEU* 3.2 23.3 + - - +
441C TYR* 3.0 58.3 + - + -
701C POV 3.2 50.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 438 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322C PHE* 4.6 11.0 - - + -
326C LEU* 4.2 35.2 - - + -
330C LEU* 3.8 21.4 - - + +
434C VAL 2.9 17.2 + - - +
435C ALA 3.7 3.6 - - - +
437C ARG* 1.3 78.3 - - - +
439C PHE* 1.3 70.8 + - + +
441C TYR* 3.3 4.1 + - + +
442C VAL* 2.9 48.4 + - + +
----------------------------------------------------------
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Residues in contact with PHE 439 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239C PHE* 3.7 23.3 - + + -
297C LEU* 3.7 51.8 - - + -
300C VAL* 4.9 9.2 - - + -
301C VAL* 4.0 19.5 - - + -
322C PHE* 5.9 3.6 - + - -
435C ALA* 2.9 37.1 + - + +
436C ASP 3.6 4.3 - - - +
438C LEU* 1.3 88.0 - - + +
440C LEU* 1.3 60.1 + - - +
442C VAL* 4.3 7.9 - - + -
443C PHE* 2.8 37.8 + + - +
----------------------------------------------------------
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Residues in contact with LEU 440 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236C ILE* 3.8 29.4 - - + +
239C PHE* 3.8 13.8 - - + +
240C TYR* 4.1 37.2 - - + +
436C ASP 2.9 13.3 + - - +
437C ARG* 3.2 28.0 + - - +
439C PHE* 1.3 75.6 - - - +
441C TYR* 1.3 76.7 + - + +
443C PHE* 3.8 1.5 - - - +
444C PHE* 2.9 25.4 + - + +
701C POV 4.6 17.9 - - + +
----------------------------------------------------------
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Residues in contact with TYR 441 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329C PHE 5.6 0.2 - - - -
330C LEU* 3.7 44.1 + - + -
331C TRP* 5.0 7.4 - + - +
437C ARG* 3.0 51.7 + - + +
438C LEU* 3.8 4.5 - - + +
440C LEU* 1.3 86.7 - - + +
442C VAL* 1.3 65.1 + - + +
444C PHE* 3.3 7.3 + + + +
445C VAL* 3.0 30.7 + - + +
701C POV 4.4 10.0 + - - -
----------------------------------------------------------
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Residues in contact with VAL 442 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438C LEU* 2.9 38.9 + - + +
439C PHE* 3.8 9.2 - - + +
441C TYR* 1.3 76.3 - - + +
443C PHE* 1.3 68.6 + - + +
445C VAL* 3.3 6.6 + - - +
446C ILE* 2.9 48.9 + - + +
----------------------------------------------------------
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Residues in contact with PHE 443 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235C ALA 4.1 7.9 - - - -
236C ILE* 4.1 11.7 - - + -
239C PHE* 3.7 19.5 - + + -
290C LEU* 3.4 49.8 - - + +
293C PHE* 3.8 11.2 - + + -
294C SER* 3.6 25.8 - - - -
297C LEU* 3.3 30.5 - - + -
439C PHE* 2.8 26.4 + - + +
440C LEU 3.9 2.0 - - - +
442C VAL* 1.3 85.0 - - + +
444C PHE* 1.3 68.4 + - - +
446C ILE* 4.4 7.0 - - + +
447C CYS* 2.9 28.8 + - - +
705C POV 6.0 2.2 - - + -
----------------------------------------------------------
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Residues in contact with PHE 444 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236C ILE* 3.8 21.8 - - + +
440C LEU* 2.9 20.8 + - + +
441C TYR* 3.6 8.1 - + + +
443C PHE* 1.3 76.4 - - - +
445C VAL* 1.3 76.6 + - + +
447C CYS* 4.0 0.5 - - - +
448C SER* 2.9 49.0 + - - -
701C POV 3.8 23.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL 445 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C TYR* 3.0 21.9 + - + +
442C VAL* 3.6 6.3 - - - +
444C PHE* 1.3 89.0 - - + +
446C ILE* 1.3 64.5 + - + +
448C SER* 3.8 2.3 - - - -
449C ILE* 2.9 46.9 + - + +
705C POV 5.5 4.3 - - - -
----------------------------------------------------------
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Residues in contact with ILE 446 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286C PHE* 3.8 13.3 - - + -
290C LEU* 3.9 22.2 - - + -
442C VAL* 2.9 39.6 + - + +
443C PHE* 4.0 8.7 - - + +
444C PHE 3.4 0.2 - - - -
445C VAL* 1.3 81.5 - - + +
447C CYS* 1.3 64.3 + - - +
449C ILE* 3.9 3.2 - - - +
450C GLY* 2.9 22.7 + - - -
705C POV 4.3 53.7 - - + +
----------------------------------------------------------
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Residues in contact with CYS 447 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232C SER* 3.6 34.3 - - - -
236C ILE* 4.1 15.0 - - + -
286C PHE* 4.2 10.2 - - - -
287C ILE* 4.7 2.7 - - - -
290C LEU* 3.8 16.1 - - + +
443C PHE 2.9 21.7 + - - +
444C PHE 4.0 1.8 - - - +
446C ILE* 1.3 74.4 - - - +
448C SER* 1.3 62.6 + - - +
450C GLY* 3.9 0.2 - - - -
451C THR* 2.7 41.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 448 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236C ILE* 6.1 0.2 - - - +
444C PHE* 2.9 45.3 + - - -
445C VAL* 3.8 3.4 - - - -
447C CYS* 1.3 76.7 - - - +
449C ILE* 1.3 69.3 + - - +
451C THR* 4.6 2.0 - - - -
452C PHE* 2.9 43.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 449 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445C VAL* 2.9 33.6 + - + +
446C ILE* 3.9 3.8 - - - +
448C SER* 1.3 79.4 - - - +
450C GLY* 1.3 60.0 + - - +
452C PHE* 3.8 4.7 - - + +
453C SER* 2.9 43.3 + - - +
705C POV 4.6 19.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY 450 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286C PHE* 4.0 12.3 - - - -
446C ILE 2.9 15.9 + - - -
447C CYS 3.9 0.4 - - - -
449C ILE* 1.3 79.0 - - - +
451C THR* 1.3 55.9 + - - +
453C SER* 3.3 2.0 + - - -
454C ILE* 2.9 37.1 + - - +
705C POV 4.0 26.2 - - - +
----------------------------------------------------------
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Residues in contact with THR 451 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229C ILE* 4.0 16.7 - - + +
232C SER* 5.5 0.2 + - - -
283C TYR* 3.9 22.4 + - + -
286C PHE* 4.1 4.9 - - - -
287C ILE* 4.8 0.3 - - - +
447C CYS* 2.7 35.5 + - - -
448C SER* 3.9 4.7 - - - -
450C GLY* 1.3 75.2 - - - +
452C PHE* 1.3 65.3 + - + +
454C ILE* 3.4 2.6 + - - +
455C PHE* 2.9 65.8 + - + -
----------------------------------------------------------
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Residues in contact with PHE 452 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448C SER* 2.9 37.7 + - - +
449C ILE* 4.1 4.7 - - + +
451C THR* 1.3 82.9 - - + +
453C SER* 1.3 61.0 + - - +
455C PHE* 4.2 12.5 - + + +
456C LEU* 2.9 52.1 + - + +
----------------------------------------------------------
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Residues in contact with SER 453 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449C ILE* 2.9 31.8 + - - +
450C GLY* 3.8 5.6 - - - -
452C PHE* 1.3 77.6 - - - +
454C ILE* 1.3 62.8 + - - +
456C LEU* 4.4 6.0 - - - +
457C ASP* 3.3 22.5 + - - +
705C POV 5.4 8.1 - - - -
----------------------------------------------------------
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Residues in contact with ILE 454 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279C ILE* 3.4 38.3 - - + +
282C ARG* 4.8 2.0 - - + +
283C TYR* 4.1 37.2 - - + +
286C PHE* 4.4 7.0 - - + -
450C GLY 2.9 23.0 + - - +
451C THR* 3.8 4.5 - - - +
453C SER* 1.3 78.5 - - - +
455C PHE* 1.3 75.6 + - + +
457C ASP* 3.5 6.6 + - - +
458C ALA* 3.2 21.2 + - + +
705C POV 3.5 33.0 - - + +
----------------------------------------------------------
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Residues in contact with PHE 455 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C PHE* 5.8 5.8 - + - -
225C ILE* 3.7 39.5 - - + -
229C ILE* 4.3 8.5 - - + -
283C TYR* 4.3 17.9 - + + -
451C THR* 2.9 46.3 + - + +
452C PHE* 4.2 14.4 - + + +
454C ILE* 1.3 85.4 - - + +
456C LEU* 1.3 62.9 + - + +
458C ALA* 3.2 8.4 + - + +
459C SER* 3.0 31.4 + - - -
----------------------------------------------------------
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Residues in contact with LEU 456 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452C PHE* 2.9 42.6 + - + +
453C SER* 4.4 6.1 - - - +
455C PHE* 1.3 74.5 - - + +
457C ASP* 1.3 65.9 + - - +
458C ALA 3.2 0.7 + - - -
459C SER* 3.3 5.5 + - - +
460C HIS* 3.0 53.4 + - + +
----------------------------------------------------------
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Residues in contact with ASP 457 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C TYR* 3.4 39.7 + - + -
279C ILE* 4.4 11.0 - - + +
282C ARG* 4.8 2.9 + - - -
453C SER 3.3 19.4 + - - +
454C ILE* 3.6 7.9 - - - +
455C PHE 3.3 0.2 - - - -
456C LEU* 1.3 78.1 - - - +
458C ALA* 1.3 59.5 + - - +
460C HIS* 3.9 11.9 + - - +
461C ASN 4.0 5.2 + - - -
----------------------------------------------------------
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Residues in contact with ALA 458 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C TYR* 4.5 8.5 - - - -
137C PHE* 3.8 47.1 - - + +
279C ILE* 4.6 8.7 - - + -
454C ILE* 3.2 12.9 + - + +
455C PHE* 3.2 12.0 + - + +
456C LEU 3.1 0.6 - - - -
457C ASP* 1.3 77.6 - - - +
459C SER* 1.3 63.0 + - - +
460C HIS 3.2 1.2 + - - -
461C ASN* 3.5 17.0 + - - +
----------------------------------------------------------
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Residues in contact with SER 459 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455C PHE 3.0 17.0 + - - -
456C LEU* 3.3 9.1 + - - -
458C ALA* 1.3 75.9 - - - +
460C HIS* 1.3 69.4 + - - +
461C ASN 3.3 6.9 + - - +
462C VAL* 4.9 5.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS 460 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456C LEU* 3.0 43.4 + - + +
457C ASP* 3.9 8.3 + - - +
458C ALA 3.2 1.2 - - - -
459C SER* 1.3 88.1 + - - +
461C ASN* 1.3 58.5 + - - +
462C VAL* 3.6 10.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il