Contacts of the helix formed by residues 300 - 330 (chain G) in PDB entry 6V3O


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 300 (chain G).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    293G  ARG*     4.0     3.1    -      -       -      -
    297G  PRO      3.4    20.6    -      -       -      +
    298G  ARG*     3.3     6.0    +      -       -      +
    299G  VAL*     1.3    73.9    -      -       -      +
    301G  PRO*     1.3    75.0    -      -       -      +
    302G  GLU*     3.2    29.2    -      -       -      +
    303G  VAL*     3.1    31.7    +      -       -      +
    304G  THR*     3.3     8.7    +      -       -      -
    513G  ASP*     4.2     9.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 301 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    293G  ARG*     4.5     4.5    -      -       -      +
    300G  THR*     1.3    86.7    -      -       -      +
    302G  GLU*     1.3    69.8    +      -       -      +
    304G  THR*     3.3     9.3    +      -       -      +
    305G  ARG      3.1    17.7    +      -       -      -
    513G  ASP*     3.8    26.2    -      -       -      +
    516G  GLY*     3.6    12.8    -      -       -      +
    517G  ALA*     3.5    24.9    -      -       -      +
    520G  VAL*     3.6    31.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 302 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    300G  THR*     3.2    28.2    -      -       -      +
    301G  PRO*     1.3    82.3    -      -       -      +
    303G  VAL*     1.3    63.2    +      -       +      +
    305G  ARG*     3.4    10.9    +      -       -      +
    306G  ASP*     2.9    39.3    +      -       -      +
    520G  VAL*     5.4     0.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 303 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    237G  PRO*     4.7    11.7    -      -       +      -
    238G  GLN*     3.7    34.3    -      -       -      +
    290G  GLY*     4.4     6.3    -      -       -      +
    298G  ARG      3.9    11.2    -      -       -      +
    299G  VAL*     3.7    20.4    -      -       +      -
    300G  THR*     3.1    42.6    -      -       -      +
    302G  GLU*     1.3    79.9    -      -       +      +
    304G  THR*     1.3    62.4    +      -       -      +
    306G  ASP*     3.2     1.9    +      -       -      +
    307G  VAL*     3.1    29.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with THR 304 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    290G  GLY      2.9    12.1    +      -       -      +
    293G  ARG*     2.6    32.4    +      -       -      +
    300G  THR      3.3     5.9    +      -       -      -
    301G  PRO*     3.3    10.0    +      -       -      -
    302G  GLU      3.2     0.6    -      -       -      -
    303G  VAL*     1.3    76.7    -      -       -      +
    305G  ARG*     1.3    66.8    +      -       -      +
    306G  ASP      3.2     0.5    +      -       -      -
    307G  VAL*     3.5     3.2    +      -       -      +
    308G  CYS*     3.1    28.9    +      -       -      -
    453G  LEU*     3.7    24.0    -      -       +      -
    455G  ILE*     4.2     8.7    -      -       +      -
    520G  VAL*     4.5    10.8    -      -       +      -
    521G  LEU*     5.0     3.1    -      -       +      -
    529G  PHE*     4.3    12.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 305 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    301G  PRO      3.1    13.1    +      -       -      +
    302G  GLU*     3.6    13.1    +      -       -      +
    303G  VAL      3.4     0.2    -      -       -      -
    304G  THR*     1.3    75.9    -      -       -      +
    306G  ASP*     1.3    75.1    +      -       -      +
    308G  CYS*     3.7     2.3    +      -       -      +
    309G  LEU*     3.3    42.4    +      -       +      +
    392G  LEU*     3.1    32.3    +      -       -      +
    393G  LEU*     3.8    14.5    +      -       -      +
    396G  GLY*     4.4    15.1    +      -       -      +
    520G  VAL*     4.1    12.7    -      -       +      +
    523G  GLU*     5.0    11.9    -      -       -      -
    524G  LEU*     4.1    29.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 306 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    238G  GLN*     2.9    34.7    +      -       +      +
    302G  GLU*     2.9    27.4    +      -       -      +
    303G  VAL      3.6     5.2    -      -       -      +
    304G  THR      3.1     0.8    -      -       -      -
    305G  ARG*     1.3    92.5    +      -       -      +
    307G  VAL*     1.3    59.0    +      -       -      +
    309G  LEU*     3.2     4.0    +      -       -      +
    310G  LEU*     2.8    34.4    +      -       +      +
    393G  LEU*     3.6    26.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 307 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    237G  PRO*     4.6     1.8    -      -       +      +
    238G  GLN*     4.0    23.8    -      -       +      +
    241G  MET*     3.2    46.4    -      -       +      +
    289G  MET      3.8    19.1    -      -       -      +
    290G  GLY*     3.9    11.0    -      -       -      -
    303G  VAL*     3.1    17.6    +      -       +      +
    304G  THR*     3.7     6.7    -      -       -      +
    306G  ASP*     1.3    75.5    -      -       -      +
    308G  CYS*     1.3    63.1    +      -       -      +
    310G  LEU*     3.9     7.2    -      -       +      -
    311G  ALA*     2.9    23.6    +      -       -      +
    453G  LEU*     4.4    11.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with CYS 308 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    304G  THR      3.1    23.6    +      -       -      +
    305G  ARG      4.0     3.1    -      -       -      +
    307G  VAL*     1.3    77.3    -      -       -      +
    309G  LEU*     1.3    60.7    +      -       -      +
    311G  ALA*     3.5     6.8    +      -       -      +
    312G  ARG*     3.2    31.0    +      -       -      +
    449G  SER*     5.3     1.5    -      -       -      -
    453G  LEU*     4.0    16.6    -      -       -      -
    524G  LEU*     4.0    20.4    -      -       +      -
    528G  SER*     4.5    16.8    -      -       -      +
    529G  PHE*     3.8    30.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 309 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    305G  ARG*     3.3    48.9    +      -       +      +
    306G  ASP      3.2     4.9    +      -       -      +
    308G  CYS*     1.3    76.5    -      -       -      +
    310G  LEU*     1.3    64.7    +      -       -      +
    312G  ARG*     3.2    23.3    +      -       -      +
    313G  MET*     3.2    20.5    +      -       -      +
    389G  ALA*     4.1    17.0    -      -       +      +
    392G  LEU*     4.0    24.9    -      -       +      -
    393G  LEU*     3.8    33.9    -      -       +      +
    524G  LEU*     4.7    16.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 310 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    238G  GLN*     4.2    16.8    -      -       +      -
    241G  MET*     4.3     6.7    -      -       -      -
    242G  ARG*     3.9    32.1    -      -       +      +
    306G  ASP*     2.8    28.1    +      -       +      +
    307G  VAL*     3.8    22.7    -      -       +      +
    309G  LEU*     1.3    72.7    -      -       -      +
    311G  ALA*     1.3    62.7    +      -       -      +
    313G  MET*     3.2    20.7    +      -       +      +
    314G  MET*     3.1    38.8    +      -       +      +
    393G  LEU*     4.7    13.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 311 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    241G  MET*     3.7    10.7    -      -       +      +
    245G  MET*     5.6     0.9    -      -       -      -
    307G  VAL      2.9    18.5    +      -       -      +
    308G  CYS*     3.6     8.5    -      -       -      +
    309G  LEU      3.2     0.2    -      -       -      -
    310G  LEU*     1.3    77.4    -      -       -      +
    312G  ARG*     1.3    63.1    +      -       -      +
    314G  MET*     3.5    12.4    +      -       -      +
    315G  ALA*     3.0    23.9    +      -       -      +
    449G  SER*     3.3    29.3    -      -       -      +
    450G  LEU*     4.4     4.0    -      -       +      +
    451G  VAL*     4.8     6.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 312 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    308G  CYS*     3.2    19.1    +      -       -      +
    309G  LEU*     3.2    20.0    +      -       -      +
    311G  ALA*     1.3    75.7    -      -       -      +
    313G  MET*     1.3    63.4    +      -       -      +
    315G  ALA*     3.5     2.3    +      -       -      +
    316G  ALA*     3.1    22.7    +      -       -      +
    385G  THR      6.0     0.8    -      -       -      +
    386G  ARG*     5.4     1.2    -      -       -      -
    389G  ALA*     4.6    11.0    -      -       +      -
    448G  LEU*     3.5    46.1    +      -       -      +
    449G  SER*     4.4    11.1    +      -       -      -
    524G  LEU*     6.0     0.6    -      -       -      +
    525G  PRO*     3.5    20.6    -      -       -      +
    527G  ASP*     2.8    31.1    +      -       -      -
    528G  SER*     3.0    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 313 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    309G  LEU      3.2    15.8    +      -       -      +
    310G  LEU*     3.2    24.0    +      -       +      +
    312G  ARG*     1.3    74.3    -      -       -      +
    314G  MET*     1.3    66.6    +      -       +      +
    316G  ALA*     3.2     4.4    +      -       -      +
    317G  ASN*     3.1    30.7    +      -       -      +
    386G  ARG*     3.8    19.7    -      -       +      +
    389G  ALA*     3.6    19.3    -      -       +      +
    390G  ARG*     3.5    62.4    -      -       +      +
    393G  LEU*     5.2     7.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 314 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    241G  MET*     3.5    38.6    -      -       +      -
    242G  ARG*     5.1     8.7    -      -       +      +
    245G  MET*     3.7    20.6    -      -       +      -
    249G  HIS*     3.6    29.6    -      -       +      +
    310G  LEU*     3.1    26.5    +      -       +      +
    311G  ALA*     3.8     7.2    -      -       -      +
    313G  MET*     1.3    75.0    -      -       +      +
    315G  ALA*     1.3    63.4    +      -       -      +
    317G  ASN*     3.1    19.1    +      -       -      +
    318G  LEU*     3.2    20.2    +      -       -      +
    450G  LEU*     3.8    12.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 315 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253G  TRP*     4.9     0.3    -      -       -      -
    311G  ALA      3.0    18.5    +      -       -      +
    312G  ARG      3.7     1.8    -      -       -      +
    314G  MET*     1.3    77.8    -      -       -      +
    316G  ALA*     1.3    63.5    +      -       -      +
    318G  LEU*     3.2     2.9    +      -       -      +
    319G  TYR*     3.0    38.9    +      -       +      -
    448G  LEU*     3.6    29.8    -      -       +      +
    450G  LEU*     3.9    24.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 316 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    312G  ARG      3.1    14.0    +      -       -      +
    313G  MET      3.2     7.6    +      -       -      +
    315G  ALA*     1.3    75.8    -      -       -      +
    317G  ASN*     1.3    56.6    +      -       -      +
    319G  TYR*     3.2     9.4    +      -       -      +
    320G  ILE*     2.8    36.0    +      -       +      +
    382G  LEU*     4.0    11.2    -      -       +      +
    385G  THR*     3.9    16.2    -      -       -      +
    386G  ARG*     3.7    26.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 317 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    313G  MET*     3.1    25.6    +      -       -      +
    314G  MET*     3.1    10.4    +      -       -      +
    316G  ALA*     1.3    77.0    -      -       -      +
    318G  LEU*     1.3    64.0    +      -       +      +
    320G  ILE*     3.2     8.9    +      -       -      +
    321G  ASP*     3.2    31.2    +      -       -      +
    386G  ARG*     3.3    34.2    +      -       -      +
    390G  ARG*     5.6     2.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 318 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    248G  ILE*     5.6     0.7    -      -       +      -
    249G  HIS*     3.3    45.5    -      -       +      +
    253G  TRP*     3.7    39.2    +      -       +      +
    314G  MET      3.2    17.0    +      -       -      +
    315G  ALA      3.9     2.7    -      -       -      +
    317G  ASN*     1.3    78.1    -      -       +      +
    319G  TYR*     1.3    62.2    +      -       -      +
    321G  ASP*     3.6    13.0    +      -       +      +
    322G  GLN*     3.1    27.4    +      -       -      +
    450G  LEU*     4.2    23.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 319 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253G  TRP*     3.6    26.2    -      +       -      -
    315G  ALA*     3.0    37.5    +      -       +      -
    316G  ALA*     3.6     7.9    -      -       -      +
    318G  LEU*     1.3    74.9    -      -       -      +
    320G  ILE*     1.3    60.2    +      -       -      +
    322G  GLN*     3.2     2.3    +      -       -      -
    323G  ILE*     2.8    37.3    +      -       +      +
    382G  LEU*     3.9    20.9    -      -       +      -
    412G  PHE*     3.9    25.8    -      +       +      -
    439G  LEU*     4.3    13.0    -      -       +      -
    442G  GLN*     3.5    20.7    +      -       +      -
    443G  VAL*     3.5    28.2    -      -       +      +
    446G  PHE*     4.0     3.5    -      -       +      +
    447G  GLY      2.7    30.1    +      -       -      -
    448G  LEU*     4.7     5.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 320 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    316G  ALA*     2.8    22.0    +      -       +      +
    317G  ASN*     3.2    12.5    +      -       -      +
    319G  TYR*     1.3    76.3    -      -       -      +
    321G  ASP*     1.3    69.3    +      -       -      +
    323G  ILE*     3.3     4.2    +      -       -      +
    324G  GLU*     2.9    45.7    +      -       -      +
    379G  ARG*     3.9    21.9    -      -       +      +
    382G  LEU*     3.3    39.0    -      -       +      -
    383G  TYR*     4.1    33.7    -      -       +      +
    386G  ARG*     5.1     4.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 321 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    317G  ASN*     3.2    20.3    +      -       -      +
    318G  LEU*     3.9    14.2    -      -       -      +
    320G  ILE*     1.3    82.9    -      -       -      +
    322G  GLN*     1.3    64.1    +      -       +      +
    324G  GLU*     3.2    12.0    +      -       -      +
    325G  GLU*     3.0    39.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 322 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253G  TRP*     3.6    19.3    -      -       +      +
    254G  LYS*     3.4    40.0    -      -       -      +
    318G  LEU      3.1    19.7    +      -       -      +
    319G  TYR*     3.2     4.7    +      -       -      +
    321G  ASP*     1.3    78.3    -      -       +      +
    323G  ILE*     1.3    62.4    +      -       -      +
    325G  GLU*     3.5    16.7    +      -       -      +
    326G  LEU*     3.0    22.7    +      -       -      +
    435G  SER*     5.3     7.3    -      -       -      +
    438G  ASP*     5.6     3.3    -      -       -      +
    439G  LEU*     4.0    22.5    +      -       +      +
    442G  GLN*     3.7    20.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 323 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    319G  TYR*     2.8    27.6    +      -       +      +
    320G  ILE*     3.8     5.2    -      -       -      +
    322G  GLN*     1.3    72.1    -      -       -      +
    324G  GLU*     1.3    58.9    +      -       -      +
    326G  LEU*     3.1     6.3    +      -       +      +
    327G  MET*     2.9    36.2    +      -       -      +
    375G  LEU*     3.4    36.1    -      -       +      +
    378G  VAL*     4.0    17.5    -      -       +      -
    379G  ARG*     4.4    10.5    -      -       +      +
    382G  LEU*     4.1    13.7    -      -       +      -
    412G  PHE*     5.0     3.1    -      -       +      -
    416G  LEU*     4.0    21.1    -      -       +      -
    439G  LEU*     4.0    19.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 324 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    320G  ILE*     2.9    32.3    +      -       -      +
    321G  ASP*     3.2    11.8    +      -       -      +
    323G  ILE*     1.3    77.3    -      -       -      +
    325G  GLU*     1.3    63.0    +      -       +      +
    326G  LEU      3.3     0.3    +      -       -      -
    327G  MET*     3.3    12.2    +      -       +      +
    328G  PHE*     3.3    33.2    +      -       +      -
    379G  ARG*     2.8    47.3    +      -       -      +
    383G  TYR*     4.3     6.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 325 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    254G  LYS*     4.2    12.2    +      -       -      -
    321G  ASP*     3.0    28.3    +      -       -      +
    322G  GLN*     3.9    24.8    +      -       -      +
    324G  GLU*     1.3    76.6    -      -       +      +
    326G  LEU*     1.3    60.2    +      -       -      +
    328G  PHE*     3.7    13.3    -      -       +      +
    329G  GLU*     3.4    18.9    +      -       -      +
    188H  GLN*     5.8     1.1    -      -       -      +
    192H  ARG*     4.7     5.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 326 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    322G  GLN      3.0    18.0    +      -       -      +
    323G  ILE*     3.1     7.6    +      -       +      +
    325G  GLU*     1.3    76.5    -      -       -      +
    327G  MET*     1.3    60.6    +      -       -      +
    329G  GLU*     2.9    22.3    +      -       +      +
    330G  LEU*     3.0    41.3    +      -       +      +
    375G  LEU*     3.9    18.2    -      -       +      -
    435G  SER*     3.9    16.6    -      -       -      +
    436G  LEU*     3.7    48.7    -      -       +      +
    439G  LEU*     3.7    21.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 327 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    323G  ILE*     2.9    33.5    +      -       -      +
    324G  GLU*     3.3    19.5    +      -       +      +
    326G  LEU*     1.3    74.7    -      -       -      +
    328G  PHE*     1.3    64.6    +      -       -      +
    329G  GLU      3.2     0.7    +      -       -      -
    330G  LEU      3.6    10.1    +      -       -      +
    372G  ARG*     2.9    48.9    +      -       +      +
    375G  LEU*     3.4    31.9    -      -       +      +
    376G  GLY*     3.8    22.7    -      -       -      +
    379G  ARG*     4.7    16.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 328 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    324G  GLU*     3.3    26.7    +      -       +      -
    325G  GLU*     3.7    13.0    -      -       +      +
    327G  MET*     1.3    77.7    -      -       -      +
    329G  GLU*     1.3    63.3    +      -       -      +
    331G  SER*     3.4    14.2    +      -       -      -
    372G  ARG*     3.4     7.0    +      -       -      +
    184H  ARG*     4.1    27.4    -      -       +      -
    185H  SER*     3.6    33.6    +      -       -      +
    188H  GLN*     3.8    31.4    -      -       -      +
    189H  LYS*     4.0     2.1    +      -       -      -
    192H  ARG*     4.9     3.4    -      -       -      +
   1002H  SO4      4.7    11.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 329 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    325G  GLU      3.4     9.7    +      -       -      +
    326G  LEU*     2.9    17.4    +      -       +      +
    328G  PHE*     1.3    79.8    -      -       -      +
    330G  LEU*     1.3    79.9    +      -       +      +
    331G  SER      3.0     7.8    +      -       -      -
    332G  MET*     3.9     2.6    -      -       -      +
    431G  ILE*     4.2    10.9    -      -       -      +
    435G  SER*     4.7    15.5    +      -       -      +
    189H  LYS*     3.3    37.8    +      -       -      +
    192H  ARG*     3.4    35.2    +      -       -      +
    220H  GLU*     3.5    16.9    -      -       -      +
    223H  ALA*     3.8     9.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 330 (chain G). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    326G  LEU*     3.0    45.7    +      -       +      +
    327G  MET*     4.0     8.5    -      -       -      +
    328G  PHE      3.6     0.4    -      -       -      -
    329G  GLU*     1.3    81.7    -      -       +      +
    331G  SER*     1.3    58.3    +      -       -      +
    332G  MET*     3.3    19.4    +      -       +      +
    369G  GLU*     4.5     1.6    -      -       -      +
    371G  TYR*     4.0    30.6    -      -       +      +
    372G  ARG*     4.4     8.7    +      -       -      +
    375G  LEU*     4.3     9.9    -      -       +      -
    419G  CYS*     5.7     1.6    -      -       +      -
    423G  LEU*     4.2    19.1    -      -       +      -
    431G  ILE*     3.5    34.5    -      -       +      +
    436G  LEU*     4.7    10.1    -      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il