Contacts of the helix formed by residues 985 - 1033 (chain A) in PDB entry 6VSB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 985 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
984A LEU* 1.3 67.6 - - - +
986A PRO* 1.3 79.2 - - - +
987A PRO* 3.0 22.3 - - + +
988A GLU* 2.6 25.2 + - - +
989A ALA* 2.8 19.9 + - - +
383C SER* 2.4 25.9 + - - +
385C THR* 5.0 10.4 + - - -
386C LYS* 4.7 9.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 986 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
748A GLU* 4.8 20.4 - - + +
981A LEU* 5.8 3.6 - - + -
984A LEU 3.7 2.2 - - - +
985A ASP* 1.3 99.1 - - - +
987A PRO* 1.4 66.7 - - + +
989A ALA* 4.1 7.0 - - + -
990A GLU* 2.8 28.3 + - - +
386C LYS* 5.3 4.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 987 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
985A ASP* 3.1 23.8 - - + +
986A PRO* 1.4 91.4 - - + +
988A GLU* 1.3 65.8 + - - +
990A GLU* 3.0 30.0 - - + +
991A VAL* 3.7 5.0 + - - +
413B GLY* 4.7 20.6 - - - -
427B ASP* 4.1 26.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 988 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
984A LEU* 3.5 26.8 - - + +
985A ASP* 2.6 26.5 + - - +
987A PRO* 1.3 79.9 - - - +
989A ALA* 1.3 64.4 + - - +
991A VAL* 3.2 18.9 + - - +
992A GLN* 3.3 15.6 + - + +
382C VAL 5.2 0.2 - - - -
383C SER* 2.4 33.4 + - - -
384C PRO* 5.7 0.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 989 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
980A ILE* 4.7 4.9 - - - +
981A LEU* 4.4 19.3 - - + -
984A LEU* 3.6 31.6 - - + +
985A ASP 2.8 20.5 + - - +
986A PRO* 3.8 5.4 - - + +
988A GLU* 1.3 78.1 - - - +
990A GLU* 1.3 56.2 + - - +
992A GLN* 3.1 5.1 + - - +
993A ILE* 2.8 35.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 990 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
748A GLU* 4.6 10.1 + - - +
752A LEU* 3.8 22.9 - - + +
986A PRO* 2.8 19.1 + - - +
987A PRO* 3.0 21.9 - - + +
989A ALA* 1.3 72.9 - - - +
991A VAL* 1.3 81.6 + - - +
993A ILE* 3.6 12.6 - - - +
994A ASP* 2.7 34.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 991 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
987A PRO 3.8 8.1 - - - +
988A GLU* 3.2 10.7 + - - +
989A ALA 3.2 0.6 - - - -
990A GLU* 1.3 100.3 + - - +
992A GLN* 1.3 73.5 + - - +
994A ASP* 3.3 11.5 + - - +
995A ARG* 3.4 20.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 992 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
971A GLY 4.3 3.5 + - - +
972A ALA* 3.5 12.5 - - + +
973A ILE* 3.1 45.4 + - + +
980A ILE* 4.7 11.9 - - + -
984A LEU* 4.0 20.2 - - + -
988A GLU* 3.3 10.7 + - + +
989A ALA* 3.1 8.3 + - - +
991A VAL* 1.3 88.4 - - - +
993A ILE* 1.3 61.4 + - - +
995A ARG* 3.6 14.0 + - - +
996A LEU* 3.4 23.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 993 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
748A GLU* 3.5 23.8 - - - +
749A CYS* 4.1 15.5 - - + -
752A LEU* 4.2 10.1 - - + -
977A LEU* 4.0 11.0 - - + -
980A ILE* 3.5 26.0 - - + -
981A LEU* 3.7 21.8 - - + -
989A ALA* 2.8 26.7 + - + +
990A GLU* 3.6 7.4 - - - +
992A GLN* 1.3 74.8 - - - +
994A ASP* 1.3 59.6 + - - +
996A LEU* 2.9 6.4 + - + +
997A ILE* 2.8 49.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 994 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
752A LEU* 4.6 10.2 - - + +
755A GLN* 5.0 2.8 + - - -
756A TYR* 3.1 24.0 + - - -
990A GLU* 2.7 25.8 + - - +
991A VAL* 3.3 8.2 + - - +
993A ILE* 1.3 73.7 - - - +
995A ARG* 1.3 64.0 + - + +
997A ILE* 3.9 9.2 - - - +
998A THR* 3.0 26.0 + - - -
971C GLY* 4.9 3.6 - - - -
995C ARG* 3.1 31.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 995 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
970A PHE* 3.4 22.4 + - - +
971A GLY* 3.1 42.2 + - - -
972A ALA* 5.2 2.7 - - + -
991A VAL* 3.4 17.8 + - + +
992A GLN* 3.8 20.2 - - - +
993A ILE 3.2 0.8 - - - -
994A ASP* 1.3 78.3 - - + +
996A LEU* 1.3 63.2 + - - +
998A THR* 3.4 5.8 + - - -
999A GLY* 3.1 19.1 + - - -
755B GLN* 5.1 1.2 - - - +
756B TYR* 5.0 1.6 + - - -
990B GLU* 4.4 9.1 + - - -
994B ASP* 3.3 36.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 996 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
968A SER 4.2 5.6 - - - +
969A ASN 4.2 3.1 - - - +
970A PHE* 4.1 21.8 - - + -
972A ALA* 3.8 16.8 - - + -
974A SER 3.5 22.0 - - - +
975A SER 4.2 16.4 - - - +
977A LEU* 5.2 7.6 - - + -
980A ILE* 3.5 28.7 - - + -
992A GLN 3.4 3.6 + - - +
993A ILE* 2.9 10.4 + - + +
995A ARG* 1.3 79.8 - - - +
997A ILE* 1.3 63.9 + - + +
999A GLY* 3.3 1.7 + - - -
1000A ARG* 2.9 53.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 997 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
742A ILE* 3.9 31.8 - - + +
743A CYS* 4.6 1.6 - - - -
749A CYS* 3.9 17.7 - - - +
752A LEU* 3.9 22.9 - - + -
753A LEU* 4.2 17.0 - - + +
756A TYR* 4.2 24.0 - - + +
977A LEU* 6.3 0.2 - - + -
993A ILE* 2.8 43.2 + - + +
994A ASP* 3.9 7.0 - - - +
995A ARG 3.3 0.4 - - - -
996A LEU* 1.3 72.8 - - + +
998A THR* 1.3 55.3 + - - +
1000A ARG* 3.1 1.9 + - - +
1001A LEU* 2.7 37.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 998 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
756A TYR* 3.3 21.7 + - + -
994A ASP* 3.0 22.1 + - - -
995A ARG* 3.7 6.7 - - - -
996A LEU 3.3 0.2 - - - -
997A ILE* 1.3 76.9 - - - +
999A GLY* 1.3 63.9 + - - +
1001A LEU* 3.7 6.5 - - - +
1002A GLN* 3.0 26.0 + - + +
1002C GLN* 5.6 10.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 999 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
970A PHE* 3.4 36.1 - - - -
995A ARG 3.1 9.2 + - - -
996A LEU 3.7 1.6 - - - -
998A THR* 1.3 79.3 - - - +
1000A ARG* 1.3 63.2 + - - +
1002A GLN* 3.1 10.7 + - - +
1003A SER* 3.0 21.0 + - - -
756B TYR* 6.3 0.7 - - - -
759B PHE* 4.4 1.8 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1000 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
741A TYR* 4.0 24.1 + - + +
742A ILE* 2.7 53.2 + - + +
743A CYS* 4.9 2.2 + - - +
965A GLN* 5.1 3.6 + - + +
966A LEU* 3.3 35.0 + - - +
970A PHE* 4.1 14.2 - - + -
975A SER 3.3 25.3 + - - -
976A VAL* 4.8 0.8 - - - +
977A LEU* 4.5 21.0 - - - +
996A LEU* 2.9 37.2 + - + +
997A ILE 3.8 2.2 - - - +
999A GLY* 1.3 74.9 - - - +
1001A LEU* 1.3 62.4 + - - +
1003A SER* 2.8 26.6 + - - +
1004A LEU* 3.0 10.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1001 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
742A ILE* 4.3 22.8 - - + +
753A LEU* 4.7 5.6 - - + -
756A TYR* 4.2 23.3 - - + -
759A PHE* 4.0 35.0 - - + -
760A CYS* 6.3 0.4 - - - -
763A LEU* 5.0 4.9 - - + +
997A ILE* 2.7 23.6 + - + +
998A THR* 3.7 5.8 - - - +
1000A ARG* 1.3 73.2 - - - +
1002A GLN* 1.3 57.6 + - - +
1004A LEU* 3.1 6.0 + - - +
1005A GLN* 2.8 42.8 + - + +
1002C GLN* 3.7 28.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1002 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
998A THR* 3.0 16.5 + - + +
999A GLY* 3.1 11.0 + - - +
1001A LEU* 1.3 79.1 - - - +
1003A SER* 1.3 56.3 + - - +
1005A GLN* 3.4 7.0 + - + +
1006A THR* 2.9 33.5 + - - +
756B TYR* 5.1 4.2 - - - -
759B PHE* 3.8 26.5 - - + -
998B THR* 5.4 7.3 + - - +
1001B LEU* 4.0 20.1 - - - +
1002B GLN* 4.4 20.7 - - - +
1005B GLN* 4.1 20.6 - - - +
1002C GLN* 4.4 14.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1003 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
741A TYR* 3.5 20.8 + - - -
962A LEU* 3.8 5.9 - - - +
965A GLN* 4.3 25.6 - - - +
970A PHE* 5.1 1.1 - - - -
999A GLY 3.0 12.7 + - - -
1000A ARG* 2.8 18.9 + - - -
1001A LEU 3.2 0.2 - - - -
1002A GLN* 1.3 77.6 - - - +
1004A LEU* 1.3 60.9 + - - +
1006A THR* 3.4 7.8 + - - -
1007A TYR* 3.1 21.3 + - - +
759B PHE* 4.3 15.2 - - - -
762B GLN* 6.2 0.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1004 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
736A VAL* 4.5 20.0 - - + -
738A CYS* 4.4 20.2 - - + -
741A TYR* 3.8 33.2 - - + -
742A ILE* 4.8 6.5 - - + -
763A LEU* 4.3 21.1 - - + -
962A LEU* 3.6 34.5 - - + -
1000A ARG 3.0 8.5 + - - +
1001A LEU* 3.1 8.5 + - - +
1003A SER* 1.3 79.7 + - - +
1005A GLN* 1.3 65.3 + - - +
1007A TYR* 3.1 7.6 + - + +
1008A VAL* 3.0 29.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1005 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
759A PHE* 3.8 17.5 - - + -
762A GLN* 5.5 0.2 + - - -
763A LEU* 3.2 42.1 - - - +
1001A LEU* 2.8 20.9 + - + +
1002A GLN* 3.7 8.7 - - + +
1004A LEU* 1.3 77.0 - - - +
1006A THR* 1.3 61.0 + - - +
1008A VAL* 4.0 1.1 - - - +
1009A THR* 2.9 37.5 + - - +
1005B GLN* 5.4 2.5 - - - +
1002C GLN* 5.8 5.6 - - + +
1006C THR* 3.3 40.9 - - - +
1010C GLN* 5.4 3.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1006 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1002A GLN* 2.9 18.8 + - - +
1003A SER* 3.5 8.8 - - - -
1005A GLN* 1.3 76.1 - - - +
1007A TYR* 1.3 63.0 + - - +
1009A THR* 3.3 5.7 + - - -
1010A GLN* 3.1 33.6 + - + +
759B PHE* 5.6 2.7 - - - -
762B GLN* 3.6 35.4 - - - +
763B LEU* 5.9 3.6 - - + -
1005B GLN* 3.0 38.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1007 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
734A THR* 2.8 33.6 + - - +
736A VAL* 5.3 2.0 - - + -
767A LEU* 4.0 15.3 - - + -
955A ASN* 4.6 2.1 + - - -
958A ALA* 3.7 46.4 - - + -
959A LEU* 3.2 20.5 - - + +
961A THR* 5.6 1.6 - - + -
962A LEU* 3.9 29.4 - - + -
1003A SER 3.1 13.3 + - - +
1004A LEU* 3.1 10.5 + - + +
1006A THR* 1.3 78.1 - - - +
1008A VAL* 1.3 68.7 + - + +
1010A GLN* 3.3 4.8 + - - +
1011A GLN* 2.9 50.3 + - + +
762B GLN* 5.1 4.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1008 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
736A VAL* 5.5 0.2 - - + -
763A LEU* 4.0 32.5 - - + +
766A ALA* 3.8 28.7 - - + -
767A LEU* 3.8 34.1 - - + -
1004A LEU* 3.0 22.0 + - + +
1005A GLN* 4.2 1.8 - - - +
1007A TYR* 1.3 82.5 - - + +
1009A THR* 1.3 62.3 + - - +
1011A GLN* 3.3 5.0 + - - +
1012A LEU* 3.0 29.2 + - + +
1010C GLN* 4.9 3.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1009 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1005A GLN* 2.9 29.2 + - - +
1006A THR* 3.7 5.8 - - - -
1008A VAL* 1.3 77.6 - - - +
1010A GLN* 1.3 65.2 + - + +
1012A LEU* 3.2 9.4 + - - +
1013A ILE* 3.1 31.0 + - + +
1009B THR* 3.9 21.8 - - + +
1009C THR* 3.9 29.4 - - + +
1010C GLN* 5.7 3.0 + - - +
1013C ILE* 4.3 4.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1010 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
958A ALA* 5.7 3.7 - - + +
1006A THR* 3.1 21.9 + - + +
1007A TYR* 3.9 4.6 - - - +
1009A THR* 1.3 78.0 - - + +
1011A GLN* 1.3 58.0 + - - +
1013A ILE* 3.2 9.0 + - - +
1014A ARG* 2.8 49.4 + - - +
762B GLN* 3.8 33.5 + - - +
763B LEU* 5.8 4.0 - - - +
766B ALA* 4.2 21.4 - - - +
1008B VAL* 5.5 2.2 - - - +
1012B LEU* 4.4 17.6 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1011 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731A MET* 4.7 12.6 - - - +
732A THR 5.2 1.6 + - - -
734A THR* 3.5 22.2 - - - +
767A LEU* 4.2 14.4 - - + -
770A ILE* 3.8 12.2 - - + +
955A ASN* 4.7 14.3 + - - +
958A ALA* 4.3 9.1 - - + +
1007A TYR* 2.9 51.7 + - + +
1008A VAL 3.6 4.9 - - - +
1009A THR 3.2 0.2 - - - -
1010A GLN* 1.3 77.3 - - - +
1012A LEU* 1.3 56.8 + - - +
1014A ARG* 2.7 30.5 + - - +
1015A ALA* 2.7 31.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1012 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
766A ALA* 4.4 16.8 - - + +
767A LEU* 6.3 0.7 - - + -
770A ILE* 3.6 26.4 - - + +
773A GLU* 5.6 0.9 - - - +
1008A VAL* 3.0 17.1 + - + +
1009A THR* 3.6 9.0 - - - +
1011A GLN* 1.3 77.1 - - + +
1013A ILE* 1.3 56.4 + - - +
1015A ALA* 3.2 5.6 + - + +
1016A ALA* 2.9 28.8 + - - +
1010C GLN* 3.3 41.3 - - - +
1013C ILE* 3.8 30.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1013 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1009A THR* 3.1 31.1 + - + +
1010A GLN* 3.2 7.8 + - - +
1012A LEU* 1.3 76.6 - - - +
1014A ARG* 1.3 63.3 + - - +
1016A ALA* 3.2 16.3 + - - +
1017A GLU* 3.2 12.3 + - - +
1009B THR* 4.4 4.5 - - + +
1012B LEU* 3.8 52.5 - - + +
1013B ILE* 4.0 20.6 - - + -
1016B ALA* 5.2 8.7 - - + +
1019B ARG* 4.9 4.1 + - - +
1013C ILE* 4.0 15.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1014 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731A MET* 3.5 26.2 - - - -
951A VAL* 5.2 5.4 - - + -
954A GLN* 3.3 55.4 + - - +
955A ASN* 5.1 4.0 - - - +
958A ALA* 4.5 9.3 - - - +
1010A GLN* 2.8 33.0 + - - +
1011A GLN* 2.7 36.6 + - - +
1013A ILE* 1.3 77.8 - - - +
1015A ALA* 1.3 62.5 + - - +
1017A GLU* 3.1 12.0 + - + +
1018A ILE* 3.0 24.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1015 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731A MET* 3.7 21.7 - - + +
770A ILE* 4.0 26.2 - - + -
773A GLU* 4.2 12.5 - - - +
774A GLN* 4.4 4.7 + - - +
1011A GLN 2.7 22.7 + - - +
1012A LEU* 3.5 6.5 - - + +
1014A ARG* 1.3 72.9 - - - +
1016A ALA* 1.3 58.6 + - - +
1018A ILE* 3.1 3.9 + - - +
1019A ARG* 2.8 29.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1016 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773A GLU* 6.0 0.2 - - - -
1012A LEU 2.9 13.7 + - - +
1013A ILE* 3.2 12.8 + - + +
1015A ALA* 1.3 76.0 - - - +
1017A GLU* 1.3 63.6 + - - +
1019A ARG* 3.3 8.7 + - - +
1020A ALA* 3.1 21.1 + - - +
1016B ALA* 6.1 4.0 - - + -
1019B ARG* 5.3 1.3 - - - +
1013C ILE* 5.0 12.1 - - + +
1016C ALA* 6.3 2.9 - - + -
1017C GLU* 6.2 4.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1017 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728A PRO* 5.5 2.4 - - - +
1013A ILE 3.2 6.7 + - - +
1014A ARG* 3.1 15.4 + - + +
1016A ALA* 1.3 76.7 - - - +
1018A ILE* 1.3 87.1 + - - +
1020A ALA* 3.3 8.4 + - - +
1021A SER* 3.0 24.8 + - - -
773B GLU* 5.5 0.2 - - - +
1019B ARG* 3.3 46.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1018 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728A PRO* 4.2 23.3 - - + +
729A VAL* 4.2 4.3 - - - -
730A SER* 3.9 24.5 - - - +
731A MET* 3.9 21.5 - - + -
774A GLN* 4.2 9.0 - - - +
777A ASN* 4.0 14.1 - - - +
951A VAL* 4.0 22.9 - - + -
1014A ARG* 3.0 15.6 + - + +
1015A ALA* 3.6 8.5 - - - +
1017A GLU* 1.3 87.9 - - - +
1019A ARG* 1.3 54.2 + - - +
1021A SER* 2.9 4.5 + - - -
1022A ALA* 2.6 34.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1019 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773A GLU* 3.5 30.5 + - - +
776A LYS* 3.5 29.3 - - - +
777A ASN* 3.1 33.2 + - - +
780A GLU* 3.8 12.9 + - - -
1015A ALA 2.8 13.5 + - - +
1016A ALA* 3.3 13.0 + - - +
1018A ILE* 1.3 76.8 - - - +
1020A ALA* 1.3 57.2 + - - +
1022A ALA* 3.3 1.0 + - - +
1023A ASN* 2.8 54.3 + - - +
1017C GLU* 4.6 22.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1020 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1016A ALA 3.1 12.4 + - - +
1017A GLU* 3.6 10.1 - - - +
1018A ILE 3.2 0.2 - - - -
1019A ARG* 1.3 75.1 - - - +
1021A SER* 1.3 63.1 + - - +
1023A ASN* 3.3 11.0 + - - +
1024A LEU* 3.0 22.7 + - - +
1019B ARG* 5.9 3.1 - - - +
1023B ASN* 5.9 4.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1021 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727A LEU* 4.2 10.1 - - - +
728A PRO* 2.9 39.7 + - - +
1017A GLU* 3.0 20.8 + - - -
1018A ILE* 2.9 12.4 + - - -
1020A ALA* 1.3 75.5 - - - +
1022A ALA* 1.3 56.9 + - - +
1024A LEU* 3.1 10.0 + - - +
1025A ALA* 2.8 29.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1022 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728A PRO 4.0 1.2 + - - -
729A VAL* 3.9 22.4 - - + -
777A ASN* 3.4 44.4 - - + +
780A GLU* 6.1 1.6 - - - +
781A VAL* 3.4 9.8 - - + +
1018A ILE 2.6 17.1 + - - +
1019A ARG 3.7 2.7 - - - +
1021A SER* 1.3 72.7 - - - +
1023A ASN* 1.3 58.5 + - - +
1026A ALA* 2.9 27.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1023 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777A ASN* 5.0 0.2 - - - +
780A GLU* 3.9 18.0 - - - +
1019A ARG* 2.8 48.5 + - - +
1020A ALA* 3.6 9.0 - - - +
1021A SER 3.2 0.2 - - - -
1022A ALA* 1.3 77.4 - - - +
1024A LEU* 1.3 55.2 + - - +
1026A ALA* 3.4 5.8 + - - +
1027A THR* 2.7 39.0 + - - +
1020C ALA* 6.0 4.6 - - - +
1024C LEU* 6.4 0.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1024 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727A LEU* 4.3 18.2 - - + -
1020A ALA 3.0 13.2 + - - +
1021A SER* 3.5 9.0 - - - +
1023A ASN* 1.3 74.5 - - - +
1025A ALA* 1.3 61.0 + - - +
1027A THR* 3.0 7.7 + - + -
1028A LYS* 2.8 61.8 + - + +
1042A PHE* 4.0 19.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1025 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727A LEU* 3.8 26.0 - - + +
729A VAL* 3.6 27.6 - - + -
781A VAL* 4.2 3.9 - - + +
1021A SER 2.8 15.4 + - - +
1022A ALA 3.3 1.1 + - - +
1024A LEU* 1.3 75.4 - - - +
1026A ALA* 1.3 62.3 + - - +
1028A LYS* 3.4 2.8 + - - +
1029A MET* 3.1 23.7 + - - +
1060A VAL* 3.8 13.7 - - + -
1062A PHE* 3.9 5.5 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1026 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780A GLU* 4.0 22.9 - - + +
781A VAL* 3.6 29.5 - - + +
784A GLN* 3.6 8.3 + - - +
1022A ALA 2.9 17.2 + - - +
1023A ASN* 3.7 6.1 - - - +
1025A ALA* 1.3 75.5 - - - +
1027A THR* 1.3 62.9 + - - +
1029A MET* 3.4 3.1 + - - +
1030A SER* 3.2 24.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1027 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1023A ASN* 2.7 23.8 + - - +
1024A LEU* 3.4 10.3 - - + -
1026A ALA* 1.3 76.0 - - - +
1028A LYS* 1.3 60.7 + - - +
1030A SER* 3.2 13.7 + - - -
1031A GLU* 2.6 30.6 - - - +
1039A ARG* 5.2 0.2 - - - +
1042A PHE* 4.5 8.1 - - + -
1039C ARG* 3.1 31.2 - - - +
1042C PHE* 5.3 8.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1028 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
725A GLU* 2.2 41.7 + - - +
727A LEU* 3.9 15.9 - - + -
1024A LEU* 2.8 45.3 + - + +
1025A ALA 3.9 4.3 - - - +
1027A THR* 1.3 74.0 - - - +
1029A MET* 1.3 58.2 + - - +
1031A GLU* 4.2 0.2 - - - -
1032A CYS* 2.9 36.5 + - - +
1042A PHE* 2.7 59.0 + - + +
1043A CYS* 4.4 6.7 - - - -
1062A PHE* 4.5 11.0 - - + -
1064A HIS* 5.6 0.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with MET1029 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781A VAL* 3.1 39.3 - - + +
782A PHE* 4.3 6.1 - - + +
784A GLN* 3.3 13.2 - - - +
877A LEU* 3.6 28.9 - - + -
1025A ALA 3.1 14.3 + - - +
1026A ALA 3.7 2.0 - - - +
1027A THR 3.3 0.2 - - - -
1028A LYS* 1.3 77.4 - - - +
1030A SER* 1.3 58.5 + - - +
1033A VAL* 2.9 54.6 + - + +
1034A LEU* 3.2 4.9 + - + +
1053A PRO* 3.9 15.5 - - + -
1060A VAL* 4.2 5.6 - - + -
1062A PHE* 3.7 26.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER1030 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784A GLN* 3.0 26.0 + - - -
1026A ALA 3.2 5.0 + - - -
1027A THR* 3.2 10.3 + - - -
1029A MET* 1.3 79.9 - - - +
1031A GLU* 1.3 62.6 + - - +
1034A LEU* 3.4 28.2 + - - +
1035A GLY 3.7 0.2 + - - -
1040C VAL* 3.6 29.6 - - - +
1041C ASP* 3.7 20.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1031 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1027A THR* 2.6 38.9 + - - +
1030A SER* 1.3 80.0 - - - +
1032A CYS* 1.3 67.4 + - - +
1033A VAL 3.7 0.2 - - - -
1035A GLY 3.2 13.5 - - - -
1036A GLN 3.3 1.4 + - - -
1037A SER* 3.2 27.3 + - - -
1039A ARG* 6.1 1.8 - - - -
1042A PHE* 4.1 8.6 - - + -
1039C ARG* 3.1 61.3 + - + +
1040C VAL* 3.6 24.1 - - - +
1042C PHE* 4.2 12.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with CYS1032 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028A LYS 2.9 14.1 + - - +
1031A GLU* 1.3 78.2 - - - +
1033A VAL* 1.3 58.3 + - + +
1035A GLY 3.2 12.1 - - - +
1037A SER* 3.5 22.4 - - - -
1042A PHE* 4.2 4.9 - - - -
1043A CYS* 2.0 49.1 - - + -
1048A HIS* 3.3 22.4 - - - +
1050A MET* 4.7 0.5 - - - -
1051A SER* 2.5 26.3 + - - +
1064A HIS* 4.4 3.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1033 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877A LEU* 4.3 22.4 - - + -
881A THR* 3.4 29.5 + - + -
885A GLY 5.5 0.3 - - - +
888A PHE* 4.8 0.9 - - + -
905A ARG* 5.0 2.1 + - - -
1028A LYS 4.7 0.7 - - - +
1029A MET* 2.9 22.3 + - + +
1032A CYS* 1.3 78.5 - - + +
1034A LEU* 1.3 57.8 + - + +
1035A GLY 3.1 8.7 + - - +
1051A SER* 3.2 24.2 - - - +
1053A PRO* 3.6 28.0 - - + -
1062A PHE* 3.8 30.5 - - + -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il