Contacts of the helix formed by residues 985 - 1033 (chain C) in PDB entry 6VSB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 985 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383B SER* 3.2 18.0 - - - -
384B PRO* 5.9 2.5 - - + -
385B THR* 4.4 12.0 + - - +
386B LYS* 5.5 0.2 - - - +
984C LEU* 1.3 74.3 - - + +
986C PRO* 1.3 66.5 - - - +
987C PRO* 3.0 28.9 - - - +
988C GLU* 3.2 11.2 + - + +
989C ALA* 2.7 33.3 + - - +
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Residues in contact with PRO 986 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385B THR* 6.1 0.2 - - - +
386B LYS* 4.1 17.9 - - - +
748C GLU* 5.5 14.1 - - + +
981C LEU* 5.8 4.3 - - + -
984C LEU 3.3 5.6 - - - +
985C ASP* 1.3 92.0 - - - +
987C PRO* 1.4 69.1 - - + +
989C ALA* 3.5 8.8 - - + +
990C GLU* 3.4 16.1 + - - +
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Residues in contact with PRO 987 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
985C ASP* 3.0 25.6 - - - +
986C PRO* 1.4 93.5 - - + +
988C GLU* 1.3 68.3 - - - +
990C GLU* 2.9 28.4 - - + +
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Residues in contact with GLU 988 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381B GLY* 5.2 3.8 - - - -
984C LEU* 3.1 45.5 - - + +
985C ASP* 3.2 14.1 + - + +
987C PRO* 1.3 78.7 - - - +
989C ALA* 1.3 67.1 + - - +
990C GLU 3.1 0.5 + - - -
991C VAL* 3.0 35.5 + - + +
992C GLN* 3.9 14.8 + - - +
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Residues in contact with ALA 989 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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980C ILE* 5.1 5.2 - - + +
981C LEU* 4.8 7.2 - - + -
984C LEU* 4.1 16.6 - - + +
985C ASP 2.7 23.9 + - - +
986C PRO* 3.5 13.0 - - + +
987C PRO 3.0 0.2 + - - -
988C GLU* 1.3 80.7 + - - +
990C GLU* 1.3 62.2 + - - +
992C GLN* 3.2 7.8 + - - +
993C ILE* 2.9 41.7 + - + +
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Residues in contact with GLU 990 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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971B GLY 5.8 0.2 - - - +
995B ARG* 5.9 0.7 + - - -
752C LEU* 3.7 27.5 - - + +
986C PRO 3.4 7.1 + - - +
987C PRO* 2.9 25.8 + - + +
989C ALA* 1.3 77.6 - - - +
991C VAL* 1.3 70.4 + - - +
993C ILE* 4.3 4.5 - - - +
994C ASP* 2.7 37.9 + - - +
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Residues in contact with VAL 991 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
988C GLU* 3.0 32.3 + - + +
990C GLU* 1.3 93.0 - - - +
992C GLN* 1.3 82.2 + - + +
994C ASP* 3.4 4.1 + - + +
995C ARG* 3.1 39.4 + - + +
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Residues in contact with GLN 992 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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971C GLY 4.6 4.6 + - - -
972C ALA* 3.2 20.1 - - + +
973C ILE* 2.5 42.5 + - - +
980C ILE* 3.5 31.9 - - + -
984C LEU* 4.7 1.3 - - + -
988C GLU* 3.9 21.3 + - - +
989C ALA 3.2 4.8 + - - +
991C VAL* 1.3 87.8 - - + +
993C ILE* 1.3 61.8 + - - +
995C ARG* 3.5 14.5 + - - +
996C LEU* 3.3 17.3 + - - +
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Residues in contact with ILE 993 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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748C GLU* 4.8 10.8 - - + -
749C CYS* 4.3 13.5 - - + +
752C LEU* 4.1 8.3 - - + -
977C LEU* 4.2 21.5 - - + -
980C ILE* 4.4 12.1 - - + -
981C LEU* 3.8 32.5 - - + -
989C ALA* 2.9 31.4 + - + +
990C GLU* 3.9 6.7 - - - +
992C GLN* 1.3 74.2 - - - +
994C ASP* 1.3 66.2 + - - +
996C LEU* 3.0 10.4 + - + +
997C ILE* 2.8 43.1 + - + +
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Residues in contact with ASP 994 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
971B GLY* 4.4 4.0 - - - -
995B ARG* 2.6 39.8 + - - +
752C LEU* 4.0 15.1 - - + +
755C GLN* 5.7 0.3 + - - -
756C TYR* 2.9 25.5 + - - -
990C GLU* 2.7 30.7 + - - +
991C VAL* 3.7 5.6 - - - +
993C ILE* 1.3 73.8 - - - +
995C ARG* 1.3 64.3 + - + +
997C ILE* 3.2 6.5 + - - +
998C THR* 3.0 26.2 + - - +
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Residues in contact with ARG 995 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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756A TYR* 5.0 0.6 + - - -
994A ASP* 3.1 34.1 + - - -
970C PHE* 3.3 31.7 + - - +
971C GLY* 3.5 23.7 + - - -
972C ALA 4.9 4.0 - - - +
991C VAL* 3.1 27.7 + - + +
992C GLN* 3.7 18.6 - - - +
993C ILE 3.2 0.2 - - - -
994C ASP* 1.3 79.0 - - + +
996C LEU* 1.3 61.8 + - - +
998C THR* 3.0 12.2 - - + +
999C GLY* 3.0 21.3 + - - -
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Residues in contact with LEU 996 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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968C SER 4.0 7.6 - - - +
969C ASN 3.3 22.7 - - - +
970C PHE* 3.9 16.2 - - + -
972C ALA* 3.6 15.3 - - + -
974C SER 3.5 22.2 - - - +
975C SER* 4.3 14.1 - - - +
977C LEU* 4.7 14.4 - - + -
980C ILE* 4.3 18.6 - - + -
992C GLN 3.3 6.1 + - - +
993C ILE* 3.0 11.1 + - + +
995C ARG* 1.3 80.2 - - - +
997C ILE* 1.3 57.4 + - + +
999C GLY 3.3 0.3 + - - -
1000C ARG* 2.8 48.9 + - - +
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Residues in contact with ILE 997 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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742C ILE* 3.9 22.9 - - + +
749C CYS* 3.6 39.9 - - - +
752C LEU* 3.9 19.7 - - + -
753C LEU* 4.2 20.6 - - + +
756C TYR* 4.5 19.5 - - + +
993C ILE* 2.8 33.5 + - + +
994C ASP* 3.2 7.8 + - - +
996C LEU* 1.3 77.0 - - + +
998C THR* 1.3 59.6 + - - +
1000C ARG* 3.8 0.5 - - - +
1001C LEU* 2.8 35.6 + - + +
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Residues in contact with THR 998 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002B GLN* 5.3 4.0 + - - -
756C TYR* 4.4 18.0 + - - -
994C ASP* 3.0 19.2 + - - +
995C ARG* 3.0 25.1 - - - +
997C ILE* 1.3 77.9 - - - +
999C GLY* 1.3 65.5 + - - +
1001C LEU* 3.3 6.7 + - - +
1002C GLN* 3.0 23.9 + - - +
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Residues in contact with GLY 999 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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756A TYR* 6.3 0.2 - - - -
759A PHE* 4.7 0.3 - - - -
970C PHE* 3.5 38.9 - - - -
995C ARG 3.0 14.1 + - - -
996C LEU 3.7 2.2 - - - -
998C THR* 1.3 81.6 - - - +
1000C ARG* 1.3 62.4 + - - +
1002C GLN* 3.2 16.3 + - - +
1003C SER 3.4 7.4 + - - -
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Residues in contact with ARG1000 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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741C TYR* 4.0 26.8 + - + -
742C ILE* 2.7 52.4 + - + +
743C CYS 5.2 0.6 + - - -
965C GLN* 5.1 4.0 - - + +
966C LEU* 3.6 33.0 + - - +
970C PHE* 4.0 18.5 - - + -
975C SER 3.0 27.4 + - - -
976C VAL* 4.8 0.6 - - - +
977C LEU* 4.3 20.9 - - - +
996C LEU* 2.8 36.6 + - - +
997C ILE* 4.0 2.9 - - - +
999C GLY* 1.3 70.2 - - - +
1001C LEU* 1.3 67.3 + - - +
1003C SER* 2.9 15.9 + - - +
1004C LEU* 3.1 12.5 + - - +
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Residues in contact with LEU1001 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002B GLN* 3.8 24.2 - - - +
738C CYS* 6.1 0.2 - - - -
742C ILE* 4.2 16.7 - - + +
753C LEU* 4.6 16.8 - - + -
756C TYR* 4.0 28.5 - - + -
759C PHE* 4.2 24.0 - - + -
763C LEU* 4.7 12.1 - - + -
997C ILE* 2.8 23.4 + - + +
998C THR* 3.7 5.2 - - - +
1000C ARG* 1.3 73.1 - - - +
1002C GLN* 1.3 63.4 + - - +
1004C LEU* 3.2 5.3 + - - +
1005C GLN* 2.9 34.8 + - + +
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Residues in contact with GLN1002 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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756A TYR* 5.2 7.5 - - - -
759A PHE* 3.7 21.2 - - + -
998A THR* 5.6 9.6 - - - +
1001A LEU* 3.7 29.3 - - - +
1002A GLN* 4.4 19.6 - - - +
1005A GLN* 5.8 6.5 - - + +
1002B GLN* 4.8 11.3 - - - +
970C PHE* 6.1 0.4 - - - -
998C THR* 3.0 13.5 + - - +
999C GLY* 3.5 12.1 + - - +
1000C ARG 3.1 0.4 - - - -
1001C LEU* 1.3 78.9 - - - +
1003C SER* 1.3 59.0 + - - +
1005C GLN* 3.5 9.0 + - + +
1006C THR* 2.9 33.7 + - - +
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Residues in contact with SER1003 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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759A PHE* 4.3 9.8 - - - -
762A GLN* 5.0 3.1 + - - -
741C TYR* 4.7 3.6 - - - -
962C LEU* 3.9 12.0 - - - +
965C GLN* 3.0 44.5 - - - +
999C GLY 3.4 6.7 + - - -
1000C ARG* 2.9 12.3 + - - -
1002C GLN* 1.3 77.1 - - - +
1004C LEU* 1.3 60.1 + - - +
1006C THR* 3.4 5.8 + - - -
1007C TYR* 3.0 26.9 + - - +
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Residues in contact with LEU1004 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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736C VAL* 3.8 31.6 - - + -
738C CYS* 3.5 42.8 - - + +
741C TYR* 4.5 18.2 - - + -
742C ILE* 5.0 3.4 - - + -
763C LEU* 3.8 15.0 - - + -
962C LEU* 4.2 21.9 - - + +
1000C ARG 3.1 10.8 + - - +
1001C LEU* 3.7 8.7 - - - +
1003C SER* 1.3 75.4 - - - +
1005C GLN* 1.3 64.9 + - - +
1007C TYR* 3.2 2.9 + - + +
1008C VAL* 3.0 38.0 + - + +
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Residues in contact with GLN1005 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002B GLN* 3.6 34.7 - - - +
1005B GLN* 5.4 4.9 - - - +
1006B THR* 3.5 22.6 + - + +
759C PHE* 3.6 19.8 - - - -
763C LEU* 4.2 20.2 - - + +
1001C LEU* 2.9 21.4 + - + +
1002C GLN* 3.8 8.1 - - + +
1004C LEU* 1.3 77.6 - - - +
1006C THR* 1.3 57.1 + - - +
1008C VAL* 4.0 1.0 - - - +
1009C THR* 2.6 40.6 + - - +
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Residues in contact with THR1006 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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759A PHE* 4.1 8.9 - - + -
762A GLN* 4.0 20.6 - - + +
1005A GLN* 3.3 37.5 + - - +
1002C GLN* 2.9 20.9 + - - +
1003C SER* 3.6 7.2 - - - -
1004C LEU 3.2 0.2 - - - -
1005C GLN* 1.3 74.2 - - - +
1007C TYR* 1.3 65.7 + - - +
1009C THR* 3.2 7.0 + - - -
1010C GLN* 2.9 37.8 + - + +
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Residues in contact with TYR1007 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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734C THR* 3.2 23.4 + - + +
736C VAL* 5.2 4.0 - - + -
767C LEU* 4.3 17.9 - - + -
858C LEU* 5.9 0.2 - - + -
955C ASN* 4.5 0.9 + - - -
958C ALA* 3.5 46.4 - - + -
959C LEU* 3.2 28.0 - - + +
962C LEU* 3.9 26.9 - - + -
1003C SER 3.0 14.2 + - - +
1004C LEU* 3.2 11.0 + - + +
1006C THR* 1.3 78.2 - - - +
1008C VAL* 1.3 68.2 + - + +
1010C GLN* 3.2 6.7 + - + +
1011C GLN* 2.9 54.0 + - + +
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Residues in contact with VAL1008 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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763C LEU* 4.2 25.1 - - + +
766C ALA* 3.8 28.7 - - + -
767C LEU* 3.6 35.9 - - + -
1004C LEU* 3.0 23.3 + - + +
1005C GLN 4.2 2.7 - - - +
1007C TYR* 1.3 81.6 - - + +
1009C THR* 1.3 61.9 + - - +
1011C GLN* 3.3 5.3 + - - +
1012C LEU* 2.9 29.4 + - + +
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Residues in contact with THR1009 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1009A THR* 3.9 32.8 - - + +
1009B THR* 4.1 17.1 - - + +
1013B ILE* 4.5 3.3 - - + +
1005C GLN* 2.6 31.0 + - - +
1006C THR* 3.2 7.8 + - - -
1008C VAL* 1.3 78.6 - - - +
1010C GLN* 1.3 65.9 + - + +
1012C LEU* 3.2 11.2 + - - +
1013C ILE* 3.1 29.6 + - + +
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Residues in contact with GLN1010 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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763A LEU* 5.8 1.8 - - - +
766A ALA* 4.3 14.4 - - - +
1005A GLN* 5.4 3.6 - - - +
1008A VAL* 4.9 5.5 - - - +
1009A THR* 5.7 4.0 + - - +
1012A LEU* 3.3 34.6 - - - +
958C ALA* 6.1 3.1 - - + -
1006C THR* 2.9 33.9 + - + +
1007C TYR* 3.7 6.7 - - + +
1009C THR* 1.3 78.8 - - - +
1011C GLN* 1.3 58.7 + - + +
1013C ILE* 3.3 7.2 + - - +
1014C ARG* 2.9 51.9 + - - +
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Residues in contact with GLN1011 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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731C MET* 4.0 18.0 - - - +
734C THR* 3.6 15.6 - - - +
767C LEU* 4.2 4.3 - - + -
770C ILE* 4.1 16.3 - - + +
955C ASN* 3.7 16.5 + - - +
958C ALA* 4.3 5.6 - - + +
1007C TYR* 2.9 59.6 + - + +
1008C VAL 3.7 5.8 - - - +
1010C GLN* 1.3 77.2 - - + +
1012C LEU* 1.3 52.3 + - - +
1014C ARG* 2.8 34.4 + - - +
1015C ALA* 2.7 38.3 + - - +
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Residues in contact with LEU1012 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1010B GLN* 4.4 17.7 - - + +
1013B ILE* 3.9 36.0 - - + +
766C ALA* 4.4 25.8 - - + +
770C ILE* 3.5 27.4 - - + -
1008C VAL* 2.9 22.7 + - + +
1009C THR* 3.2 7.2 + - - +
1011C GLN* 1.3 77.9 - - - +
1013C ILE* 1.3 61.5 + - - +
1015C ALA* 3.8 3.4 - - - +
1016C ALA* 3.1 22.7 + - - +
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Residues in contact with ILE1013 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1009A THR* 4.3 6.5 - - + +
1012A LEU* 3.8 54.7 - - + +
1013A ILE* 4.0 19.5 - - + -
1016A ALA* 5.0 11.3 - - + +
1013B ILE* 4.1 17.7 - - + -
1009C THR* 3.1 28.6 + - + +
1010C GLN* 3.7 9.0 - - - +
1012C LEU* 1.3 75.9 - - - +
1014C ARG* 1.3 63.7 + - - +
1016C ALA* 3.2 15.7 + - - +
1017C GLU* 3.3 12.2 + - + +
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Residues in contact with ARG1014 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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765A ARG* 5.6 6.1 - - - +
731C MET* 3.8 23.1 - - + -
951C VAL* 5.4 4.5 - - - +
954C GLN* 3.1 54.4 + - - +
955C ASN* 5.1 3.6 - - - +
958C ALA* 4.6 9.1 - - - +
1010C GLN* 2.9 36.2 + - - +
1011C GLN* 2.8 32.6 + - - +
1013C ILE* 1.3 76.8 - - - +
1015C ALA* 1.3 63.7 + - - +
1017C GLU* 3.1 18.4 + - + +
1018C ILE* 3.2 19.2 + - + +
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Residues in contact with ALA1015 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731C MET* 4.4 12.9 - - - +
770C ILE* 4.0 26.0 - - + -
773C GLU* 4.1 15.6 - - - +
774C GLN* 4.2 9.7 + - - +
1011C GLN 2.7 23.3 + - - +
1012C LEU* 3.8 4.3 - - + +
1014C ARG* 1.3 72.9 - - - +
1016C ALA* 1.3 64.3 + - - +
1018C ILE* 3.2 5.9 + - - +
1019C ARG* 3.0 23.6 + - - +
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Residues in contact with ALA1016 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1016A ALA* 6.3 2.9 - - + -
1013B ILE* 5.2 10.5 - - + +
1016B ALA* 6.3 3.4 - - + -
1012C LEU 3.1 13.6 + - - +
1013C ILE* 3.5 10.8 - - - +
1014C ARG 3.2 0.2 - - - -
1015C ALA* 1.3 77.4 - - - +
1017C GLU* 1.3 61.4 + - - +
1019C ARG* 3.3 36.7 + - - +
1020C ALA* 3.1 20.8 + - - +
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Residues in contact with GLU1017 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1016A ALA* 6.2 4.0 - - + -
1019A ARG* 4.6 22.5 + - + +
728C PRO* 5.5 3.3 - - - +
951C VAL* 5.8 1.4 - - - +
1013C ILE* 3.3 7.8 + - + +
1014C ARG* 3.1 14.0 + - + +
1016C ALA* 1.3 80.2 - - - +
1018C ILE* 1.3 71.5 + - - +
1020C ALA* 3.1 11.0 + - + +
1021C SER* 2.9 31.2 + - - -
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Residues in contact with ILE1018 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728C PRO* 4.5 7.6 - - + +
729C VAL* 3.9 8.3 - - - +
730C SER* 3.6 33.7 - - - +
731C MET* 3.4 34.8 - - + -
774C GLN* 4.2 7.9 - - - +
777C ASN* 4.3 4.0 - - - +
951C VAL* 4.0 31.0 - - + -
1014C ARG* 3.2 12.2 + - + +
1015C ALA* 3.2 6.7 + - - +
1017C GLU* 1.3 82.9 + - - +
1019C ARG* 1.3 55.9 + - - +
1021C SER* 2.9 5.9 + - - -
1022C ALA* 2.5 34.8 + - - +
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Residues in contact with ARG1019 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1013B ILE* 6.3 0.2 - - - +
1016B ALA* 6.3 0.2 - - - +
1017B GLU* 3.1 52.4 + - - +
1020B ALA* 5.8 4.6 - - - +
773C GLU* 2.7 43.4 + - + +
777C ASN* 4.1 23.0 - - - +
1015C ALA* 3.0 11.9 + - - +
1016C ALA* 3.3 38.5 + - - +
1017C GLU 3.3 0.2 - - - -
1018C ILE* 1.3 76.1 - - - +
1020C ALA* 1.3 57.2 + - - +
1022C ALA* 3.1 1.1 + - - -
1023C ASN* 2.7 52.4 + - - +
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Residues in contact with ALA1020 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1020A ALA* 6.5 0.7 - - + -
1023A ASN* 6.0 4.3 - - - +
1016C ALA 3.1 12.8 + - - +
1017C GLU* 3.3 13.5 - - + +
1019C ARG* 1.3 75.8 - - - +
1021C SER* 1.3 63.6 + - - +
1023C ASN* 3.3 11.2 + - - +
1024C LEU* 3.1 21.8 + - - +
----------------------------------------------------------
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Residues in contact with SER1021 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727C LEU* 4.2 10.7 - - - +
728C PRO* 2.9 39.2 + - - +
1017C GLU* 2.9 20.9 + - - -
1018C ILE* 2.9 12.4 + - - -
1020C ALA* 1.3 73.9 - - - +
1022C ALA* 1.3 59.2 + - - +
1024C LEU* 3.1 10.4 + - - +
1025C ALA* 2.8 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA1022 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728C PRO 3.9 0.6 + - - -
729C VAL* 3.9 24.2 - - + -
777C ASN* 3.5 39.7 - - + +
780C GLU* 5.8 1.6 - - - +
781C VAL* 3.3 13.7 - - + +
1018C ILE 2.5 18.5 + - - +
1019C ARG 3.6 3.4 - - - +
1021C SER* 1.3 73.1 - - - +
1023C ASN* 1.3 58.9 + - - +
1025C ALA 3.2 0.3 + - - -
1026C ALA* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with ASN1023 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1020B ALA* 6.1 3.2 - - - +
777C ASN* 4.9 1.0 - - - +
780C GLU* 3.8 21.4 - - - +
1019C ARG* 2.7 45.6 + - - +
1020C ALA* 3.6 8.9 - - - +
1022C ALA* 1.3 75.5 - - - +
1024C LEU* 1.3 56.4 + - - +
1026C ALA* 3.3 7.5 + - - +
1027C THR* 2.9 33.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU1024 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1023A ASN* 6.4 0.2 - - - +
727C LEU* 4.2 20.0 - - + -
1020C ALA 3.1 13.1 + - - +
1021C SER* 3.4 11.0 - - - +
1023C ASN* 1.3 74.1 - - - +
1025C ALA* 1.3 60.0 + - - +
1027C THR* 3.0 9.0 + - + -
1028C LYS* 2.8 42.6 + - + +
1042C PHE* 3.8 32.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA1025 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727C LEU* 3.8 20.1 - - + +
729C VAL* 3.6 27.1 - - + -
781C VAL* 4.3 4.7 - - + -
1021C SER 2.8 18.8 + - - +
1022C ALA 3.2 1.5 + - - +
1024C LEU* 1.3 72.7 - - - +
1026C ALA* 1.3 62.9 + - - +
1028C LYS* 3.3 2.4 + - - +
1029C MET* 3.0 23.6 + - - +
1060C VAL* 3.8 19.3 - - + -
1062C PHE* 3.9 4.9 - - - -
----------------------------------------------------------
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Residues in contact with ALA1026 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780C GLU* 4.5 15.7 - - + +
781C VAL* 3.9 27.5 - - + +
784C GLN* 3.7 11.6 + - - +
1022C ALA 2.9 17.0 + - - +
1023C ASN* 3.6 7.2 - - - +
1024C LEU 3.2 0.2 - - - -
1025C ALA* 1.3 76.6 - - - +
1027C THR* 1.3 63.5 + - - +
1029C MET* 3.3 5.9 + - - +
1030C SER* 3.1 25.3 + - - -
----------------------------------------------------------
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Residues in contact with THR1027 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1039B ARG* 3.7 13.9 - - - +
1042B PHE* 5.2 8.4 - - + -
1023C ASN* 2.9 15.2 + - - +
1024C LEU* 3.4 13.1 - - + -
1026C ALA* 1.3 77.1 - - - +
1028C LYS* 1.3 63.4 + - - +
1030C SER* 3.2 3.4 + - - -
1031C GLU* 2.6 54.2 + - - +
1042C PHE* 4.2 13.5 - - + -
----------------------------------------------------------
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Residues in contact with LYS1028 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
725C GLU* 2.9 39.8 + - - +
727C LEU* 3.8 18.2 - - + -
1024C LEU* 2.8 37.1 + - + +
1025C ALA 3.8 4.3 - - - +
1027C THR* 1.3 73.5 - - - +
1029C MET* 1.3 57.3 + - - +
1032C CYS* 2.7 36.9 + - + +
1042C PHE* 2.3 66.4 + - + -
1043C CYS* 4.1 7.4 - - - -
1062C PHE* 4.6 11.7 - - + -
1064C HIS* 5.1 2.7 - - + +
----------------------------------------------------------
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Residues in contact with MET1029 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781C VAL* 3.0 41.1 - - + +
782C PHE* 4.4 9.9 - - + -
784C GLN* 3.2 18.2 - - - +
877C LEU* 3.5 30.7 - - + -
1025C ALA 3.0 12.2 + - - +
1026C ALA* 3.5 7.4 - - - +
1028C LYS* 1.3 76.7 - - - +
1030C SER* 1.3 57.3 + - - +
1033C VAL* 2.9 37.1 + - + +
1034C LEU* 3.0 17.7 + - + +
1053C PRO* 4.2 13.0 - - + -
1060C VAL* 4.5 2.9 - - + -
1062C PHE* 4.0 23.3 - - + -
----------------------------------------------------------
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Residues in contact with SER1030 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1040B VAL* 3.7 8.6 - - - +
1041B ASP* 3.6 33.9 + - - +
784C GLN* 2.9 32.9 + - - -
1026C ALA 3.1 5.9 + - - -
1027C THR* 3.2 3.3 + - - -
1029C MET* 1.3 79.2 - - - +
1031C GLU* 1.3 74.5 + - - +
1034C LEU* 3.3 27.7 + - - +
1035C GLY 3.4 5.0 + - - -
----------------------------------------------------------
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Residues in contact with GLU1031 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1039B ARG* 2.4 68.1 + - + +
1040B VAL* 3.6 17.9 - - - +
1041B ASP 5.0 1.2 - - - +
1042B PHE* 4.2 5.1 - - - -
1027C THR* 2.6 41.8 + - - +
1030C SER* 1.3 87.1 - - - +
1032C CYS* 1.3 67.0 + - - +
1035C GLY* 3.2 10.2 - - - +
1036C GLN 3.6 0.9 - - - -
1037C SER* 3.1 31.3 + - - +
1039C ARG* 5.0 1.9 + - - -
1042C PHE* 4.9 6.4 - - + -
----------------------------------------------------------
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Residues in contact with CYS1032 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905C ARG* 4.7 0.7 + - - -
1028C LYS 2.7 22.3 + - - +
1031C GLU* 1.3 76.9 - - - +
1033C VAL* 1.3 57.3 + - + +
1035C GLY 3.0 15.2 - - - +
1037C SER* 3.6 16.6 - - - -
1042C PHE* 3.9 7.0 - - - -
1043C CYS* 2.0 48.0 - - + -
1048C HIS* 3.1 26.9 - - + +
1050C MET* 4.2 1.2 - - - -
1051C SER* 3.6 18.1 + - - +
1064C HIS* 4.3 3.1 - - + -
----------------------------------------------------------
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Residues in contact with VAL1033 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877C LEU* 4.3 9.9 - - + +
881C THR* 3.7 12.9 + - + -
888C PHE* 3.3 18.8 - - + -
905C ARG* 4.4 4.5 + - - -
1028C LYS 4.6 0.9 - - - +
1029C MET* 2.9 19.1 + - + +
1032C CYS* 1.3 81.0 - - - +
1034C LEU* 1.3 66.1 + - + +
1035C GLY 3.1 8.9 + - - +
1051C SER* 3.8 22.8 - - - +
1053C PRO* 3.7 26.2 - - + -
1062C PHE* 3.6 35.4 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il