Contacts of the helix formed by residues 517 - 595 (chain D) in PDB entry 6W4E
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with HIS 517 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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256A PRO 4.5 1.0 + - - -
257A TYR* 2.9 83.3 + + + +
260A ASP* 4.3 11.9 + - + +
261A PHE* 3.6 27.6 - + - -
513D ALA* 2.8 29.2 + - + +
514D LEU* 3.0 10.2 + - + +
515D ARG 3.4 0.2 - - - -
516D THR* 1.3 90.7 - - - +
518D LEU* 1.3 65.6 + - + +
519D ALA 3.6 0.4 - - - -
520D PRO* 3.6 0.4 - - - +
521D TYR* 3.1 19.8 + - - +
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Residues in contact with LEU 518 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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514D LEU* 2.7 52.6 + - + +
517D HIS* 1.3 74.3 - - + +
519D ALA* 1.3 54.9 + - - +
521D TYR* 3.0 11.1 + - + +
522D SER* 2.7 37.7 + - - -
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Residues in contact with ALA 519 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514D LEU 3.3 3.0 + - - +
515D ARG* 3.3 18.2 - - - +
518D LEU* 1.3 77.9 - - - +
520D PRO* 1.4 69.2 - - + +
522D SER* 2.8 21.1 + - - -
523D ASP* 3.0 13.3 + - - +
526D ARG* 4.6 3.1 + - - -
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Residues in contact with PRO 520 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253A LYS* 3.8 15.9 - - - +
515D ARG 3.3 9.4 - - - +
516D THR* 3.5 37.2 - - + +
517D HIS 3.6 1.6 - - - +
519D ALA* 1.4 96.7 - - + +
521D TYR* 1.3 56.2 + - - +
523D ASP* 3.3 9.6 + - + +
524D GLU* 3.0 33.0 + - - +
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Residues in contact with TYR 521 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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246A ASP* 3.5 5.9 + - - -
249A GLU 5.3 0.2 - - - -
250A VAL* 3.3 40.3 - - + +
253A LYS* 4.3 10.3 - - + +
257A TYR* 4.2 10.1 - + + +
412A PCW 4.4 6.0 - - + +
517D HIS 3.1 22.6 + - - +
518D LEU* 3.0 12.6 + - + +
520D PRO* 1.3 73.8 - - - +
522D SER* 1.3 55.4 + - - +
523D ASP 3.0 2.0 - - - -
524D GLU* 3.0 19.4 + - - +
525D LEU* 2.7 63.3 + - + +
528D ARG* 2.8 41.6 + - - -
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Residues in contact with SER 522 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
518D LEU 2.7 18.5 + - - -
519D ALA* 2.8 21.8 + - - -
521D TYR* 1.3 73.3 - - - +
523D ASP* 1.3 55.6 + - - +
525D LEU* 3.3 16.0 + - - +
526D ARG* 2.9 44.0 + - - +
529D LEU* 5.8 0.2 - - - +
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Residues in contact with ASP 523 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519D ALA 3.0 10.9 + - - +
520D PRO* 3.3 14.4 - - + +
521D TYR 3.0 0.2 - - - -
522D SER* 1.3 77.0 - - - +
524D GLU* 1.3 64.5 + - - +
526D ARG* 2.7 54.8 + - - +
527D GLN* 3.6 13.1 + - - +
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Residues in contact with GLU 524 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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249A GLU* 4.1 20.4 - - - +
253A LYS* 2.6 41.9 + - - +
520D PRO* 3.0 17.1 + - - +
521D TYR* 3.3 19.5 - - - +
523D ASP* 1.3 76.1 - - - +
525D LEU* 1.3 63.8 + - - +
527D GLN* 3.1 33.4 + - - +
528D ARG* 3.2 30.7 + - - +
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Residues in contact with LEU 525 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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246A ASP* 3.6 24.5 - - - +
521D TYR* 2.7 44.0 + - + +
522D SER* 3.5 16.2 - - - +
524D GLU* 1.3 75.3 - - - +
526D ARG* 1.3 54.5 + - - +
528D ARG* 3.5 17.4 - - + +
529D LEU* 2.6 54.6 + - + +
532D ARG* 5.2 4.0 - - - +
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Residues in contact with ARG 526 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519D ALA 4.6 3.8 + - - -
522D SER* 2.9 29.0 + - - +
523D ASP* 2.7 55.3 + - - +
524D GLU 3.1 0.2 - - - -
525D LEU* 1.3 76.4 - - - +
527D GLN* 1.3 58.3 + - + +
529D LEU* 3.7 11.4 - - + +
530D ALA* 2.9 29.3 + - - +
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Residues in contact with GLN 527 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245A LYS* 5.7 8.5 - - + +
249A GLU* 5.7 1.4 + - - -
523D ASP* 3.7 14.6 - - - +
524D GLU* 3.1 26.8 + - - +
526D ARG* 1.3 75.6 - - + +
528D ARG* 1.3 61.6 + - + +
530D ALA* 3.3 7.8 + - - +
531D ALA* 3.1 26.9 + - - +
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Residues in contact with ARG 528 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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242A GLU* 3.4 21.3 - - + +
245A LYS* 3.3 30.4 + - + +
246A ASP* 2.7 49.5 + - - +
249A GLU* 2.6 35.7 + - - +
250A VAL 4.6 0.2 - - - +
521D TYR* 2.8 44.0 + - - -
524D GLU* 3.4 23.0 + - - +
525D LEU* 3.1 16.0 + - + +
527D GLN* 1.3 75.5 - - + +
529D LEU* 1.3 61.4 + - - +
531D ALA* 3.1 7.5 + - - +
532D ARG* 2.8 35.4 + - - +
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Residues in contact with LEU 529 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
522D SER 5.8 0.2 - - - +
525D LEU* 2.6 40.3 + - + +
526D ARG* 3.7 11.7 - - + +
528D ARG* 1.3 72.2 - - + +
530D ALA* 1.3 53.4 + - - +
532D ARG* 3.6 26.9 - - + +
533D LEU* 2.7 51.1 + - + +
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Residues in contact with ALA 530 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526D ARG 2.9 18.3 + - - +
527D GLN* 3.4 9.2 - - - +
529D LEU* 1.3 76.8 - - - +
531D ALA* 1.3 57.9 + - - +
533D LEU* 3.7 7.9 + - - +
534D GLU* 2.9 31.2 + - - +
537D LYS* 5.2 2.4 + - - -
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Residues in contact with ALA 531 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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242A GLU* 4.4 12.8 - - + +
527D GLN 3.1 13.1 + - - +
528D ARG* 3.1 11.0 + - - +
530D ALA* 1.3 75.0 - - - +
532D ARG* 1.3 65.4 + - - +
534D GLU* 3.2 12.1 + - - +
535D ALA* 3.1 21.0 + - - +
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Residues in contact with ARG 532 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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239A LEU* 4.0 22.1 - - + +
242A GLU* 2.6 38.6 + - - +
246A ASP* 3.2 29.2 + - - -
525D LEU* 5.2 3.4 - - - +
528D ARG* 2.8 19.3 + - - +
529D LEU* 3.7 25.5 - - + +
531D ALA* 1.3 77.2 - - - +
533D LEU* 1.3 57.7 + - + +
535D ALA* 3.1 9.4 + - + +
536D LEU* 2.9 43.4 + - + +
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Residues in contact with LEU 533 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
529D LEU* 2.7 36.7 + - + +
530D ALA* 4.0 6.5 - - - +
532D ARG* 1.3 73.5 - - + +
534D GLU* 1.3 52.9 + - - +
536D LEU* 3.2 24.0 + - + +
537D LYS* 2.7 50.5 + - + +
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Residues in contact with GLU 534 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530D ALA* 2.9 20.2 + - - +
531D ALA* 3.2 12.0 - - - +
532D ARG 3.1 0.2 - - - -
533D LEU* 1.3 77.8 - - - +
535D ALA* 1.3 51.3 + - - +
537D LYS* 3.2 20.4 + - - +
538D GLU* 2.7 40.6 + - + +
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Residues in contact with ALA 535 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234A LYS* 4.7 11.2 - - + +
235A GLU* 4.8 9.9 - - + +
238A GLY* 5.4 7.2 - - - -
531D ALA 3.1 11.8 + - - +
532D ARG* 3.4 12.3 - - + +
534D GLU* 1.3 75.7 - - - +
536D LEU* 1.3 58.6 + - + +
538D GLU* 4.3 5.2 - - - -
539D ASN* 2.8 48.9 + - - +
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Residues in contact with LEU 536 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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235A GLU* 4.4 25.6 - - + +
532D ARG* 2.9 30.4 + - + +
533D LEU* 3.2 30.7 + - + +
535D ALA* 1.3 75.8 - - + +
537D LYS* 1.3 59.7 + - + +
540D GLY* 2.9 26.4 + - - +
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Residues in contact with LYS 537 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530D ALA 5.3 1.8 + - - -
533D LEU* 2.7 36.0 + - + +
534D GLU* 3.6 23.9 + - - +
536D LEU* 1.3 78.8 - - + +
538D GLU* 1.3 56.7 - - - +
540D GLY* 4.7 0.2 - - - -
541D GLY* 2.7 30.2 + - - +
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Residues in contact with GLU 538 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234A LYS* 6.2 1.1 - - + -
534D GLU* 2.7 24.1 + - + +
535D ALA* 3.8 6.3 - - - +
537D LYS* 1.3 71.9 - - - +
539D ASN* 1.3 72.3 + - - +
541D GLY* 3.9 0.5 - - - -
542D ALA* 3.1 23.0 + - - +
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Residues in contact with ASN 539 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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231A ASN* 3.2 31.9 + - + +
234A LYS* 3.2 29.0 - - - +
235A GLU* 2.8 45.7 + - - +
535D ALA* 2.8 22.0 + - - +
538D GLU* 1.3 77.1 - - - +
540D GLY* 1.3 55.8 + - - +
542D ALA* 3.3 2.5 + - - +
543D ARG* 2.7 48.6 + - - +
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Residues in contact with GLY 540 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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536D LEU* 2.9 23.9 + - - +
537D LYS* 4.7 0.4 - - - -
539D ASN* 1.3 79.8 - - - +
541D GLY* 1.3 50.9 + - - +
543D ARG* 3.1 12.3 + - - +
544D LEU* 2.7 43.9 + - - +
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Residues in contact with GLY 541 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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537D LYS 2.7 22.9 + - - -
538D GLU 3.9 0.7 - - - -
540D GLY* 1.3 71.8 - - - +
542D ALA* 1.3 61.3 + - - +
544D LEU* 3.2 16.5 + - - +
545D ALA* 3.1 19.9 + - - +
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Residues in contact with ALA 542 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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231A ASN* 4.2 10.1 - - - +
234A LYS* 5.5 2.2 - - - +
538D GLU 3.1 16.9 + - - +
539D ASN* 3.6 5.4 - - - +
541D GLY* 1.3 74.8 - - - +
543D ARG* 1.3 57.8 + - - +
545D ALA* 3.1 10.0 + - - +
546D GLU* 2.8 43.0 + - - +
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Residues in contact with ARG 543 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228A PHE* 3.6 36.3 + - + -
231A ASN* 3.3 36.2 - - - +
232A LEU* 3.4 17.4 - - - +
235A GLU* 2.7 43.4 + - - -
536D LEU* 6.1 0.2 - - - +
539D ASN* 2.7 34.2 + - - +
540D GLY* 3.4 10.1 - - - +
542D ALA* 1.3 71.1 - - - +
544D LEU* 1.3 55.4 + - + +
546D GLU* 3.3 12.9 - - - +
547D TYR* 2.6 56.6 + - + -
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Residues in contact with LEU 544 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540D GLY 2.7 27.7 + - - +
541D GLY* 3.2 16.4 + - - +
543D ARG* 1.3 73.8 - - + +
545D ALA* 1.3 57.7 + - - +
547D TYR* 3.4 13.4 + - + +
548D HIS* 2.9 42.6 + - + +
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Residues in contact with ALA 545 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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541D GLY 3.1 10.4 + - - +
542D ALA* 3.1 12.5 + - - +
544D LEU* 1.3 74.2 - - - +
546D GLU* 1.3 56.6 + - + +
548D HIS* 3.3 6.2 + - - +
549D ALA* 2.8 36.2 + - - +
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Residues in contact with GLU 546 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227A GLU* 3.3 42.5 - - + +
228A PHE* 4.7 7.4 + - + -
231A ASN* 2.7 33.9 + - - +
542D ALA* 2.8 29.5 + - - +
543D ARG* 3.0 17.6 + - - +
545D ALA* 1.3 74.9 - - + +
547D TYR* 1.3 56.5 + - + +
549D ALA* 4.2 4.9 - - - -
550D LYS* 2.7 44.3 + - + +
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Residues in contact with TYR 547 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228A PHE* 4.3 25.4 - + - -
543D ARG* 2.6 47.5 + - + +
544D LEU* 3.5 16.8 - - + +
546D GLU* 1.3 73.0 - - + +
548D HIS* 1.3 57.9 + - + +
550D LYS* 3.7 4.2 - - - +
551D ALA* 2.7 37.6 + - - +
613D PCW 4.8 28.7 - - + -
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Residues in contact with HIS 548 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544D LEU* 2.9 32.8 + - + +
545D ALA* 3.6 7.2 - - - +
547D TYR* 1.3 82.1 - - + +
549D ALA* 1.3 50.7 + - - +
551D ALA* 3.3 6.2 + - + +
552D THR* 2.7 40.8 + - + +
613D PCW 4.8 17.6 - - + +
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Residues in contact with ALA 549 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545D ALA 2.8 21.9 + - - +
546D GLU* 3.6 5.2 - - - +
548D HIS* 1.3 72.5 - - - +
550D LYS* 1.3 69.1 + - - +
552D THR* 2.8 19.7 + - - -
553D GLU* 2.8 28.4 + - + +
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Residues in contact with LYS 550 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220A GLN* 4.0 20.8 + - + +
223A PRO* 4.1 4.8 - - - +
224A VAL* 4.2 24.5 - - + -
227A GLU* 2.7 43.2 + - - +
228A PHE* 6.4 1.3 - - + -
546D GLU* 2.7 33.6 + - + +
547D TYR* 4.0 4.0 - - - +
549D ALA* 1.3 82.4 - - - +
551D ALA* 1.3 52.6 + - - +
553D GLU* 3.4 28.4 + - - +
554D HIS* 2.7 36.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 551 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547D TYR 2.7 24.4 + - - +
548D HIS* 3.4 8.3 - - - +
550D LYS* 1.3 74.7 - - - +
552D THR* 1.3 56.6 + - + +
554D HIS* 3.9 3.6 - - - +
555D LEU* 2.8 30.9 + - - +
613D PCW 6.5 0.7 - - + -
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Residues in contact with THR 552 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548D HIS 2.7 23.0 + - - +
549D ALA* 2.8 15.4 + - - -
551D ALA* 1.3 73.5 - - + +
553D GLU* 1.3 61.8 + - - +
555D LEU* 3.2 17.0 + - + +
556D SER* 2.8 30.4 + - - -
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Residues in contact with GLU 553 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220A GLN* 3.4 30.5 + - - +
549D ALA* 2.8 23.8 + - + +
550D LYS* 3.4 38.5 + - - +
552D THR* 1.3 77.2 - - - +
554D HIS* 1.3 60.1 + - - +
556D SER* 3.1 10.3 + - - -
557D THR* 2.8 26.2 + - - -
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Residues in contact with HIS 554 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213A THR* 5.6 4.4 - - - +
216A LYS* 6.4 0.4 - - + -
217A LEU* 3.7 29.2 - - + +
220A GLN* 5.2 8.4 - - + +
405A PCW 4.1 26.1 - - + +
418A PCW 6.1 1.1 - - + -
550D LYS 2.7 23.0 + - - +
551D ALA* 4.0 4.0 - - - +
553D GLU* 1.3 69.3 - - - +
555D LEU* 1.3 54.6 + - - +
557D THR* 3.0 17.0 + - + -
558D LEU* 2.6 64.3 + - + +
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Residues in contact with LEU 555 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551D ALA 2.8 19.7 + - - +
552D THR* 3.3 18.8 - - + +
554D HIS* 1.3 76.7 - - - +
556D SER* 1.3 52.2 + - - +
558D LEU* 3.2 16.8 + - + +
559D SER* 2.7 41.7 + - - +
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Residues in contact with SER 556 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552D THR 2.8 16.1 + - - -
553D GLU* 3.4 9.5 - - - -
555D LEU* 1.3 77.8 - - - +
557D THR* 1.3 58.1 + - - +
559D SER* 3.2 7.4 + - - -
560D GLU* 2.9 29.7 + - - +
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Residues in contact with THR 557 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213A THR* 6.3 1.3 - - + -
216A LYS* 3.6 46.2 + - + +
220A GLN* 5.5 2.8 + - - -
553D GLU 2.8 16.5 + - - -
554D HIS* 3.0 20.9 + - + -
556D SER* 1.3 76.6 - - - +
558D LEU* 1.3 62.2 + - - +
560D GLU* 3.3 8.4 - - - +
561D LYS* 3.0 39.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 558 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213A THR* 6.2 3.4 - - + -
405A PCW 4.0 25.1 - - + -
418A PCW 6.4 1.3 - - + -
554D HIS* 2.6 60.2 + - + +
555D LEU* 3.5 17.3 - - + +
557D THR* 1.3 74.5 - - - +
559D SER* 1.3 51.2 + - - +
561D LYS* 2.9 7.3 + - + +
562D ALA* 2.6 36.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 559 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555D LEU* 2.7 27.8 + - - +
556D SER* 3.2 14.9 + - - -
558D LEU* 1.3 74.5 - - - +
560D GLU* 1.3 55.4 + - - +
562D ALA* 4.1 8.7 - - - -
563D LYS* 2.9 48.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 560 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216A LYS* 2.7 38.2 + - - -
556D SER 2.9 21.6 + - - +
557D THR* 3.3 8.8 - - - +
559D SER* 1.3 75.3 - - - +
561D LYS* 1.3 85.2 + - - +
563D LYS* 5.3 1.3 - - - -
564D PRO* 3.1 21.2 - - - +
----------------------------------------------------------
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Residues in contact with LYS 561 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209A SER* 3.9 18.2 - - - +
212A SER* 4.6 14.8 - - - +
213A THR* 3.4 31.6 - - + +
216A LYS* 4.8 3.3 - - - +
557D THR* 3.0 35.8 + - - +
558D LEU* 2.9 10.2 + - + +
560D GLU* 1.3 111.0 + - - +
562D ALA* 1.3 59.6 + - - +
563D LYS 3.3 1.6 - - - -
564D PRO* 3.2 4.7 - - + +
565D ALA* 2.8 41.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 562 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558D LEU* 2.6 20.4 + - + +
559D SER* 4.0 8.3 - - - +
561D LYS* 1.3 72.5 - - - +
563D LYS* 1.3 62.7 + - + +
565D ALA* 4.4 4.3 - - - -
566D LEU* 2.9 41.4 + - + +
----------------------------------------------------------
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Residues in contact with LYS 563 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559D SER* 2.9 29.7 + - - +
560D GLU* 5.1 1.6 - - - -
562D ALA* 1.3 80.5 - - + +
564D PRO* 1.4 67.0 - - + +
566D LEU* 4.1 1.6 - - - +
567D GLU* 3.1 29.3 + - - +
----------------------------------------------------------
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Residues in contact with PRO 564 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560D GLU* 3.1 27.1 - - - +
561D LYS* 3.2 8.1 - - - +
563D LYS* 1.4 93.4 - - + +
565D ALA* 1.3 55.7 + - - +
567D GLU* 3.2 8.0 + - + +
568D ASP* 2.8 47.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 565 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209A SER* 5.2 11.7 - - - +
561D LYS* 2.8 34.5 + - + +
562D ALA* 4.1 3.4 - - - +
564D PRO* 1.3 74.1 - - - +
566D LEU* 1.3 53.3 + - + +
568D ASP* 3.6 4.9 - - - +
569D LEU* 2.7 50.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 566 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562D ALA* 2.9 32.6 + - + +
563D LYS* 4.1 2.2 - - - +
565D ALA* 1.3 77.1 - - + +
567D GLU* 1.3 58.8 + - + +
569D LEU* 3.7 19.2 - - + +
570D ARG* 2.8 61.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 567 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563D LYS 3.1 22.7 + - - +
564D PRO* 3.2 10.0 + - + +
566D LEU* 1.3 80.8 - - - +
568D ASP* 1.3 54.2 + - - +
570D ARG* 3.7 19.2 + - - +
571D GLN* 2.8 53.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 568 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A ASP* 4.2 22.3 - - - +
564D PRO* 2.8 33.4 + - - +
565D ALA* 3.7 5.8 - - - +
567D GLU* 1.3 73.5 - - - +
569D LEU* 1.3 58.3 - - + +
571D GLN* 3.2 17.2 + - - +
572D GLY* 2.9 26.3 + - - -
----------------------------------------------------------
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Residues in contact with LEU 569 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A LYS* 3.8 25.8 - - - +
206A ASN* 3.8 19.3 - - - +
565D ALA* 2.7 33.8 + - + +
566D LEU* 3.7 24.5 - - + +
568D ASP* 1.3 73.5 - - + +
570D ARG* 1.3 52.1 + - + +
572D GLY* 3.1 1.5 + - - -
573D LEU* 2.6 55.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 570 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
566D LEU* 2.8 42.0 + - + +
567D GLU* 3.7 20.9 + - - +
569D LEU* 1.3 76.3 - - + +
571D GLN* 1.3 58.7 + - + +
573D LEU* 4.3 8.5 - - + +
574D LEU* 2.9 46.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 571 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567D GLU* 2.8 40.1 + - - +
568D ASP* 3.5 19.7 - - - +
570D ARG* 1.3 72.5 - - + +
572D GLY* 1.3 57.6 + - - +
574D LEU* 5.1 2.7 - - - -
575D PRO* 3.1 21.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 572 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568D ASP 2.9 13.0 + - - -
569D LEU* 3.6 2.2 - - - -
571D GLN* 1.3 80.2 - - - +
573D LEU* 1.3 60.0 + - - +
574D LEU 3.4 0.4 - - - -
575D PRO* 3.4 5.8 - - - +
576D VAL* 3.1 31.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 573 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A LYS* 4.8 21.1 - - - +
420A PCW 6.4 3.1 - - + -
569D LEU* 2.6 44.8 + - + +
570D ARG* 4.2 6.7 - - + +
572D GLY* 1.3 72.1 - - - +
574D LEU* 1.3 57.0 + - + +
576D VAL* 3.5 14.6 - - + -
577D LEU* 2.7 52.6 + - + +
580D PHE* 6.2 0.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 574 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
570D ARG* 2.9 27.1 + - + +
571D GLN* 5.1 2.0 - - - -
573D LEU* 1.3 79.3 - - + +
575D PRO* 1.4 70.8 - - + +
577D LEU* 3.3 13.2 + - + +
578D GLU* 3.1 29.7 + - - +
----------------------------------------------------------
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Residues in contact with PRO 575 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571D GLN 3.1 27.4 - - - +
572D GLY* 3.4 8.5 - - - +
574D LEU* 1.4 93.9 - - + +
576D VAL* 1.3 59.2 + - - +
578D GLU* 3.3 10.1 + - + +
579D SER* 2.8 33.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 576 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A LYS* 6.4 2.7 - - + -
572D GLY 3.1 19.7 + - - +
573D LEU* 3.3 30.3 - - + +
575D PRO* 1.3 77.5 - - - +
577D LEU* 1.3 57.0 + - + +
579D SER* 3.3 9.3 + - - -
580D PHE* 2.7 70.6 + - + -
----------------------------------------------------------
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Residues in contact with LEU 577 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573D LEU* 2.7 39.9 + - + +
574D LEU* 3.5 14.8 - - + +
575D PRO 3.2 0.2 - - - -
576D VAL* 1.3 73.2 - - + +
578D GLU* 1.3 64.2 + - - +
580D PHE* 3.1 20.1 + - + +
581D LYS* 2.8 47.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 578 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
574D LEU* 3.1 23.0 + - - +
575D PRO* 3.3 10.7 + - + +
577D LEU* 1.3 77.6 - - - +
579D SER* 1.3 61.8 + - - +
581D LYS* 2.6 42.7 + - - +
582D VAL* 3.1 26.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 579 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575D PRO 2.8 18.5 + - - -
576D VAL* 3.5 10.2 - - - -
578D GLU* 1.3 73.4 - - - +
580D PHE* 1.3 68.3 + - - +
582D VAL* 3.1 12.7 + - - +
583D SER* 3.0 21.7 + - - -
----------------------------------------------------------
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Residues in contact with PHE 580 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573D LEU* 6.2 0.9 - - + -
576D VAL* 2.7 56.0 + - + +
577D LEU* 3.4 22.0 - - + +
579D SER* 1.3 73.9 - - - +
581D LYS* 1.3 54.3 + - - +
583D SER* 2.7 23.5 + - - -
584D PHE* 2.8 48.0 + + + -
----------------------------------------------------------
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Residues in contact with LYS 581 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577D LEU* 2.8 26.3 + - + +
578D GLU* 2.6 45.9 + - - +
579D SER 3.2 0.2 - - - -
580D PHE* 1.3 75.0 - - - +
582D VAL* 1.3 53.9 + - + +
584D PHE* 3.5 10.1 - - + +
585D LEU* 2.7 48.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL 582 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578D GLU 3.1 17.3 - - - +
579D SER* 3.3 12.6 - - - +
581D LYS* 1.3 78.1 - - + +
583D SER* 1.3 51.8 + - - +
585D LEU* 3.8 9.1 - - + +
586D SER* 2.8 38.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 583 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LYS* 3.6 22.6 - - - +
579D SER 3.0 13.1 + - - -
580D PHE* 2.7 30.7 + - - -
582D VAL* 1.3 77.1 - - - +
584D PHE* 1.3 59.7 + - - +
586D SER* 3.2 14.9 + - - -
587D ALA* 3.2 18.5 - - - +
----------------------------------------------------------
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Residues in contact with PHE 584 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580D PHE* 2.8 44.0 + + + +
581D LYS* 3.5 10.1 - - + +
582D VAL 3.1 0.2 - - - -
583D SER* 1.3 79.8 - - - +
585D LEU* 1.3 56.7 + - + +
587D ALA* 3.1 6.3 + - + +
588D LEU* 2.8 53.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 585 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581D LYS* 2.7 31.4 + - + +
582D VAL* 3.8 9.2 - - + +
584D PHE* 1.3 73.8 - - + +
586D SER* 1.3 56.8 + - - +
588D LEU* 4.1 10.2 - - + +
589D GLU* 2.9 35.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 586 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LYS* 2.9 29.6 + - - +
582D VAL* 2.8 21.1 + - - +
583D SER* 3.2 16.1 + - - -
585D LEU* 1.3 76.5 - - - +
587D ALA* 1.3 59.5 + - - +
589D GLU* 4.7 3.6 - - - -
590D GLU* 3.1 22.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 587 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A LYS* 3.7 22.1 + - + +
583D SER 3.2 17.7 + - - +
584D PHE* 3.1 10.0 + - + +
586D SER* 1.3 80.1 + - - +
588D LEU* 1.3 57.8 + - + +
590D GLU* 3.3 1.9 + - - +
591D TYR* 2.8 61.5 + - + -
----------------------------------------------------------
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Residues in contact with LEU 588 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584D PHE* 2.8 38.7 + - + +
585D LEU* 4.1 11.0 - - + +
587D ALA* 1.3 73.3 - - + +
589D GLU* 1.3 60.3 + - - +
591D TYR* 3.8 7.7 - - + +
592D THR* 2.7 34.9 + - - +
630D 17F 4.2 30.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU 589 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585D LEU* 2.9 20.5 + - - +
586D SER* 4.3 4.2 - - - +
588D LEU* 1.3 77.1 - - - +
590D GLU* 1.3 66.4 + - + +
592D THR* 3.6 5.0 + - - -
593D LYS* 2.7 58.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 590 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392A GLU* 3.3 15.9 - - - +
395A LYS* 2.8 23.2 + - - +
396A LYS* 2.6 20.5 + - - +
586D SER* 3.1 19.5 + - - +
587D ALA 3.9 0.2 - - - +
589D GLU* 1.3 77.5 - - + +
591D TYR* 1.3 60.9 + - - +
593D LYS* 3.1 11.6 + - + +
594D LYS* 2.9 56.6 + - - +
----------------------------------------------------------
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Residues in contact with TYR 591 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389A ALA* 5.6 2.0 - - + -
392A GLU* 3.5 39.2 + - + +
393A TYR* 3.4 37.7 - + - -
396A LYS* 5.3 2.8 - - + +
397A LEU* 6.0 0.9 - - - +
587D ALA* 2.8 45.9 + - + +
588D LEU* 3.8 8.5 - - + +
590D GLU* 1.3 73.0 - - - +
592D THR* 1.3 56.4 + - - +
594D LYS* 3.2 5.6 + - + +
595D LEU* 2.9 46.2 + - + +
630D 17F 3.9 25.4 - - + -
----------------------------------------------------------
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Residues in contact with THR 592 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588D LEU 2.7 23.4 + - - -
589D GLU* 3.9 5.3 - - - -
591D TYR* 1.3 76.2 - - - +
593D LYS* 1.3 58.8 + - - +
595D LEU* 3.6 4.8 - - - -
596D ASN* 3.1 42.4 + - - +
630D 17F 3.2 33.1 - - + +
----------------------------------------------------------
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Residues in contact with LYS 593 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589D GLU* 2.7 52.1 + - - +
590D GLU* 3.1 15.4 + - + +
592D THR* 1.3 80.0 - - - +
594D LYS* 1.3 67.9 + - + +
595D LEU 3.3 0.2 - - - -
596D ASN* 3.3 20.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 594 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385A SER* 5.4 4.5 + - - -
388A SER* 3.8 38.1 - - - +
389A ALA* 5.4 0.7 - - - +
392A GLU* 2.6 34.9 + - + +
395A LYS* 4.1 3.2 - - - +
590D GLU* 2.9 43.4 + - - +
591D TYR* 3.2 8.9 + - + +
593D LYS* 1.3 80.9 - - + +
595D LEU* 1.3 63.6 + - + +
596D ASN 3.2 2.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU 595 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591D TYR* 2.9 36.8 + - + +
592D THR* 3.6 7.2 - - - +
594D LYS* 1.3 81.0 - - + +
596D ASN* 1.3 62.4 + - - +
630D 17F 4.2 28.0 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il